Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4989 Trifolium pratense HOM05D003466 ORTHO05D004102 5.5e-94 347.8 202 100.0
FAN27G0165 Fragaria x ananassa HOM05D003466 ORTHO05D004102 7.6e-19 98.2 185 49.7
Lj4g0028177 Lotus japonicus HOM05D003466 ORTHO05D004102 1.0e-18 97.8 96 63.5
FAN15G3298 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.4e-17 94.0 187 46.5
Psat7g075240 Pisum sativum HOM05D003466 ORTHO05D004102 7.9e-16 88.2 169 49.7
ClCG04G004740 Citrullus lanatus HOM05D003466 ORTHO05D004102 2.3e-15 86.7 189 47.1
Ca_17998_v3 Cicer arietinum L. HOM05D003466 ORTHO05D004102 5.1e-15 85.5 161 55.3
Peaxi162Scf00071g00424 Petunia axillaris HOM05D003466 ORTHO05D004102 1.9e-14 83.6 79 67.1
RcHm_v2.0_Chr7g0222731 Rosa chinensis HOM05D003466 ORTHO05D004102 5.7e-14 82.0 76 64.5
FvH4_5g26300 Fragaria vesca HOM05D003466 ORTHO05D004102 7.4e-14 81.6 76 64.5
FAN18G1357 Fragaria x ananassa HOM05D003466 ORTHO05D004102 7.4e-14 81.6 76 64.5
VMungo0251G3008 Vigna mungo HOM05D003466 ORTHO05D004102 7.4e-14 81.6 167 45.5
MELO3C008863.2 Cucumis melo HOM05D003466 ORTHO05D004102 1.6e-13 80.5 189 45.5
FAN01G2678 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.6e-13 80.5 76 63.2
Lalb_Chr12g0205661 Lupinus albus HOM05D003466 ORTHO05D004102 1.6e-13 80.5 188 43.6
FAN13G2307 Fragaria x ananassa HOM05D003466 ORTHO05D004102 2.1e-13 80.1 186 46.2
RcHm_v2.0_Chr2g0119581 Rosa chinensis HOM05D003466 ORTHO05D004102 2.1e-13 80.1 75 64.0
MD01G1001200 Malus domestica HOM05D003466 ORTHO05D004102 2.8e-13 79.7 105 51.4
C07p24050 Brassica napus HOM05D003466 ORTHO05D004102 8.2e-13 78.2 191 43.5
Sed0012489 Sechium edule HOM05D003466 ORTHO05D004102 8.2e-13 78.2 189 44.4
BcaB03g14395 Brassica carinata HOM05D003466 ORTHO05D004102 1.1e-12 77.8 191 42.9
BolC7t42929H Brassica oleracea HOM05D003466 ORTHO05D004102 1.1e-12 77.8 191 42.9
CDE06G0321 Ceratophyllum demersum HOM05D003466 ORTHO05D004102 1.1e-12 77.8 74 66.2
Hma1.2p1_0106F.1_g051170 Hydrangea macrophylla HOM05D003466 ORTHO05D004102 1.4e-12 77.4 78 59.0
CsaV3_4G031590 Cucumis sativus L. HOM05D003466 ORTHO05D004102 6.9e-12 75.1 71 63.4
THA.LOC104802883 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 9.0e-12 74.7 81 58.0
THA.LOC104820792 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 9.0e-12 74.7 81 56.8
Sed0007742 Sechium edule HOM05D003466 ORTHO05D004102 1.5e-11 73.9 188 44.7
Aqoxy1G00514 Aquilegia oxysepala HOM05D003466 ORTHO05D004102 2.6e-11 73.2 79 60.8
CARHR195220 Cardamine hirsuta HOM05D003466 ORTHO05D004102 4.5e-11 72.4 81 56.8
Haze_22082 Corylus avellana HOM05D003466 ORTHO05D004102 5.8e-11 72.0 167 43.7
TPR.G11896 Trifolium pratense HOM05D003466 ORTHO05D004102 1.0e-10 71.2 152 42.1
Haze_21188 Corylus avellana HOM05D003466 ORTHO05D004102 2.9e-10 69.7 167 42.5
LjContig00357g0023779 Lotus japonicus HOM05D003466 ORTHO05D004102 5.0e-10 68.9 179 42.5
Atru.chr7.542 Acer truncatum HOM05D003466 ORTHO05D004102 6.5e-10 68.6 109 45.9
Carub.0008s1310 Capsella rubella HOM05D003466 ORTHO05D004102 6.5e-10 68.6 72 51.4
CiPaw.15G127600 Carya illinoinensis HOM05D003466 ORTHO05D004102 6.5e-10 68.6 167 42.5
CBR_g12232 Chara braunii HOM05D003466 ORTHO05D004102 1.4e-09 67.4 100 46.0
PGR142G0405 Punica granatum HOM05D003466 ORTHO05D004102 1.4e-09 67.4 166 42.2
Sp3g32640 Schrenkiella parvula HOM05D003466 ORTHO05D004102 2.5e-09 66.6 198 37.9
SMO364G0903 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 3.2e-09 66.2 76 52.6
Rhsim07G0176000 Rhododendron simsii HOM05D003466 ORTHO05D004102 4.2e-09 65.9 170 37.1
AUR62042249 Chenopodium quinoa HOM05D003466 ORTHO05D004102 5.5e-09 65.5 70 58.6
Glyma.05G151500 Glycine max HOM05D003466 ORTHO05D004102 5.5e-09 65.5 167 41.3
Oeu012666.1 Olea europaea HOM05D003466 ORTHO05D004102 7.1e-09 65.1 73 54.8
DCAR_004345 Daucus carota HOM05D003466 ORTHO05D004102 1.6e-08 63.9 64 57.8
BraA01t03144Z Brassica rapa HOM05D003466 ORTHO05D004102 2.7e-08 63.2 158 37.3
Lj1g0005079 Lotus japonicus HOM05D003466 ORTHO05D004102 2.7e-08 63.2 146 39.0
vmacro20986 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 2.7e-08 63.2 79 48.1
Lj1C1073T4 Lonicera japonica HOM05D003466 ORTHO05D004102 4.6e-08 62.4 68 52.9
Lalb_Chr07g0186841 Lupinus albus HOM05D003466 ORTHO05D004102 4.6e-08 62.4 167 40.7
BcaB08g34851 Brassica carinata HOM05D003466 ORTHO05D004102 6.1e-08 62.0 193 38.9
COL.COLO4_17204 Corchorus olitorius HOM05D003466 ORTHO05D004102 7.9e-08 61.6 73 56.2
Glyma.08G108300 Glycine max HOM05D003466 ORTHO05D004102 1.3e-07 60.8 168 39.9
unitig_8.g3898 Utricularia gibba HOM05D003466 ORTHO05D004102 1.3e-07 60.8 47 70.2
Phvul.003G051500 Phaseolus vulgaris HOM05D003466 ORTHO05D004102 2.3e-07 60.1 87 50.6
Thhalv10009152m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 3.0e-07 59.7 65 50.8
Thhalv10023970m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 3.0e-07 59.7 65 50.8
vmacro20985 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 5.1e-07 58.9 158 44.3
Lsat_1_v5_gn_1_55421 Lactuca sativa HOM05D003466 ORTHO05D004102 1.1e-06 57.8 76 46.1
vmacro09137 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 1.1e-06 57.8 79 45.6
Carub.0006s1611 Capsella rubella HOM05D003466 ORTHO05D004102 2.5e-06 56.6 79 48.1
Eucgr.E01598 Eucalyptus grandis HOM05D003466 ORTHO05D004102 4.3e-06 55.8 62 58.1
Peaxi162Scf00673g00432 Petunia axillaris HOM05D003466 ORTHO05D004102 4.3e-06 55.8 184 38.6
AT5G17900 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 7.4e-06 55.1 81 45.7
MSTRG.8394 Avicennia marina HOM05D003466 ORTHO05D004102 7.4e-06 55.1 72 54.2
Os06g0335101 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 7.4e-06 55.1 73 43.8
QL06p022006 Quercus lobata HOM05D003466 ORTHO05D004102 7.4e-06 55.1 88 47.7
Nitab4.5_0000841g0090 Nicotiana tabacum HOM05D003466 ORTHO05D004102 9.7e-06 54.7 49 57.1
SalBow7G4471 Salvia bowleyana HOM05D003466 ORTHO05D004102 9.7e-06 54.7 58 53.4
TWI34G0391 Tripterygium wilfordii HOM05D003466 ORTHO05D004102 9.7e-06 54.7 46 60.9


User provided reference genes

Program Settings