Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G496 Trifolium pratense HOM05D003325 ORTHO05D003852 3.8e-63 244.6 118 100.0
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 1.7e-55 219.2 118 90.7
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 1.1e-54 216.5 118 88.1
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 9.5e-54 213.4 118 86.4
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 7.5e-43 177.2 118 73.7
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 1.6e-40 169.5 115 73.0
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 6.0e-40 167.5 120 71.7
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 2.3e-39 165.6 120 70.8
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 3.9e-39 164.9 120 70.8
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 3.3e-38 161.8 109 73.4
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 6.8e-36 154.1 115 66.1
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 2.0e-35 152.5 116 63.8
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 2.6e-35 152.1 118 66.9
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 2.6e-35 152.1 118 66.9
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 7.1e-33 144.1 116 64.7
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 6.0e-32 141.0 117 62.4
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 1.7e-31 139.4 118 62.7
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 8.6e-31 137.1 118 57.6
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 1.1e-30 136.7 118 58.5
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 3.3e-30 135.2 118 58.5
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.2e-29 133.3 116 58.6
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.2e-29 133.3 116 58.6
MD06G1139600 Malus domestica HOM05D003325 ORTHO05D003852 2.8e-29 132.1 118 56.8
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 6.2e-29 131.0 116 57.8
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 6.2e-29 131.0 116 57.8
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 8.1e-29 130.6 117 58.1
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 1.4e-28 129.8 119 57.1
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 3.1e-28 128.6 118 56.8
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 2.0e-27 125.9 120 54.2
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 3.8e-26 121.7 117 55.6
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 4.9e-26 121.3 115 59.1
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 6.4e-26 120.9 122 51.6
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 8.4e-26 120.6 117 55.6
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.1e-25 120.2 117 56.4
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 1.1e-25 120.2 117 56.4
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.4e-25 119.8 120 57.5
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 3.2e-25 118.6 135 49.6
Eucgr.B00095 Eucalyptus grandis HOM05D003325 ORTHO05D003852 5.4e-25 117.9 118 58.5
Nn4g22275 Nelumbo nucifera HOM05D003325 ORTHO05D003852 5.4e-25 117.9 127 52.0
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 9.3e-25 117.1 124 55.6
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 1.6e-24 116.3 119 58.8
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 7.8e-24 114.0 119 56.3
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 1.0e-23 113.6 120 50.0
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.3e-23 113.2 119 54.6
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.3e-23 112.5 120 55.8
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 2.5e-22 109.0 114 54.4
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.5e-22 109.0 121 52.9
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 2.5e-22 109.0 119 52.1
Dinv23165 Davidia involucrata HOM05D003325 ORTHO05D003852 3.3e-22 108.6 118 50.0
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 4.3e-22 108.2 121 49.6
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 5.6e-22 107.8 120 50.8
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 7.3e-22 107.5 118 52.5
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 7.3e-22 107.5 118 49.2
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 9.6e-22 107.1 119 52.1
Eucgr.L01506 Eucalyptus grandis HOM05D003325 ORTHO05D003852 1.3e-21 106.7 107 57.9
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 1.6e-21 106.3 121 52.1
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 2.8e-21 105.5 121 51.2
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 6.2e-21 104.4 75 68.0
THA.LOC104798940 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 6.2e-21 104.4 123 47.2
Peaxi162Scf00130g00520 Petunia axillaris HOM05D003325 ORTHO05D003852 1.1e-20 103.6 119 51.3
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 1.4e-20 103.2 119 50.4
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 3.1e-20 102.1 119 45.4
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 3.1e-20 102.1 121 47.9
Nitab4.5_0012330g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 4.5e-19 98.2 122 50.8
Nitab4.5_0007721g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 5.8e-19 97.8 122 50.8
Sc10g0010530 Simmondsia chinensis HOM05D003325 ORTHO05D003852 5.8e-19 97.8 121 46.3
Cpa.g.sc4.169 Carica papaya HOM05D003325 ORTHO05D003852 7.6e-19 97.4 117 43.6
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 1.3e-18 96.7 117 45.3
Ciclev10033680m.g Citrus clementina HOM05D003325 ORTHO05D003852 2.2e-18 95.9 117 42.7
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 2.2e-18 95.9 112 50.9
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 3.8e-18 95.1 122 46.7
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 4.9e-18 94.7 117 48.7
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 4.9e-18 94.7 117 45.3
Nitab4.5_0000636g0090 Nicotiana tabacum HOM05D003325 ORTHO05D003852 8.4e-18 94.0 112 49.1
VMungo1309G3084 Vigna mungo HOM05D003325 ORTHO05D003852 1.1e-17 93.6 61 72.1
AL8G40600 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 1.4e-17 93.2 119 48.7
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 4.2e-17 91.7 118 46.6
Solyc04g016130.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 4.2e-17 91.7 122 48.4
AUR62029583 Chenopodium quinoa HOM05D003325 ORTHO05D003852 5.4e-17 91.3 119 44.5
Sopen04g008200 Solanum pennellii HOM05D003325 ORTHO05D003852 5.4e-17 91.3 122 47.5
AT5G63520 Arabidopsis thaliana HOM05D003325 ORTHO05D003852 9.3e-17 90.5 120 48.3
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 9.3e-17 90.5 116 48.3
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 1.2e-16 90.1 117 48.7
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.2e-16 90.1 117 42.7
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 1.2e-16 90.1 123 43.9
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 1.2e-16 90.1 115 43.5
MD07G1107900 Malus domestica HOM05D003543 ORTHO05D004112 2.1e-16 89.4 87 55.2
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 2.1e-16 89.4 117 42.7
CAN.G676.19 Capsicum annuum HOM05D003325 ORTHO05D003852 2.7e-16 89.0 120 47.5
AUR62038854 Chenopodium quinoa HOM05D003325 ORTHO05D003852 2.7e-16 89.0 118 44.1
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 2.7e-16 89.0 121 43.8
CARHR277380 Cardamine hirsuta HOM05D003325 ORTHO05D003852 4.6e-16 88.2 120 46.7
HanXRQChr13g0407821 Helianthus annuus HOM05D003325 ORTHO05D003852 4.6e-16 88.2 117 46.2
MBI11_g22691_MAGBIO Magnolia biondii HOM05D003325 ORTHO05D003852 4.6e-16 88.2 147 38.8
HanXRQChr02g0034301 Helianthus annuus HOM05D003325 ORTHO05D003852 6.0e-16 87.8 114 49.1
Sp2g26610 Schrenkiella parvula HOM05D003325 ORTHO05D003852 6.0e-16 87.8 116 44.8
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 1.0e-15 87.0 116 44.0
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 1.3e-15 86.7 116 44.0
C02p62780 Brassica napus HOM05D003325 ORTHO05D003852 1.3e-15 86.7 117 43.6
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 1.8e-15 86.3 117 43.6
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 3.0e-15 85.5 116 44.0
VMungo1309G1507 Vigna mungo HOM05D003325 ORTHO05D003852 3.0e-15 85.5 62 69.4
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 3.9e-15 85.1 119 42.9
Carub.0008s2425 Capsella rubella HOM05D003325 ORTHO05D003852 5.1e-15 84.7 117 47.9
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 5.1e-15 84.7 117 39.3
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 5.1e-15 84.7 115 40.9
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 5.1e-15 84.7 114 44.7
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 5.1e-15 84.7 116 44.0
Thhalv10004048m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 8.7e-15 84.0 119 41.2
Gohir.A03G053300 Gossypium hirsutum HOM05D003325 ORTHO05D003852 8.7e-15 84.0 115 40.0
Oeu061143.2 Olea europaea HOM05D003325 ORTHO05D003852 8.7e-15 84.0 117 45.3
Gohir.D03G113600 Gossypium hirsutum HOM05D003325 ORTHO05D003852 2.5e-14 82.4 115 39.1
Gorai.003G119900 Gossypium raimondii HOM05D003325 ORTHO05D003852 2.5e-14 82.4 115 39.1
COL.COLO4_07119 Corchorus olitorius HOM05D003325 ORTHO05D003852 3.3e-14 82.0 117 41.0
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 4.3e-14 81.6 118 42.4
Aqoxy5G03311 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 5.6e-14 81.3 74 59.5
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 7.4e-14 80.9 115 45.2
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.6e-13 79.7 117 41.0
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 4.8e-13 78.2 114 43.0
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 8.1e-13 77.4 118 41.5
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 8.1e-13 77.4 118 41.5
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 1.4e-12 76.6 114 41.2
BcaB07g29692 Brassica carinata HOM05D003325 ORTHO05D003852 2.4e-12 75.9 120 40.8
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 4.0e-12 75.1 114 42.1
DCAR_021629 Daucus carota HOM05D003325 ORTHO05D003852 5.3e-12 74.7 114 42.1
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 5.3e-12 74.7 114 41.2
Migut.N02143 Erythranthe guttata HOM05D003325 ORTHO05D003852 1.2e-11 73.6 114 43.0
Migut.N02169 Erythranthe guttata HOM05D003325 ORTHO05D003852 2.0e-11 72.8 114 42.1
HanXRQChr13g0408771 Helianthus annuus HOM05D003325 ORTHO05D003852 2.6e-11 72.4 109 41.3
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 3.4e-11 72.0 117 38.5
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 5.8e-11 71.2 120 40.0
Lj5A94T50 Lonicera japonica HOM05D003325 ORTHO05D003852 7.6e-11 70.9 56 60.7
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 9.9e-11 70.5 114 41.2
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 1.3e-10 70.1 119 42.9
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 2.9e-10 68.9 119 42.9
ATR0561G042 Amborella trichopoda HOM05D003325 ORTHO05D003852 6.4e-10 67.8 125 37.6
ATR0561G074 Amborella trichopoda HOM05D003325 ORTHO05D003852 1.1e-09 67.0 143 37.1
FvH4_5g08570 Fragaria vesca HOM05D003325 ORTHO05D003852 1.9e-09 66.2 117 34.2
HanXRQChr13g0408791 Helianthus annuus HOM05D003325 ORTHO05D003852 1.9e-09 66.2 114 39.5
HanXRQChr13g0408811 Helianthus annuus HOM05D003325 ORTHO05D003852 1.9e-09 66.2 99 42.4
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.6e-08 63.2 112 37.5
MD06G1139200 Malus domestica HOM05D003325 ORTHO05D003852 7.9e-08 60.8 107 36.4
HanXRQChr04g0099641 Helianthus annuus HOM05D003325 ORTHO05D003852 1.0e-07 60.5 114 36.8
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 1.3e-07 60.1 136 33.8
Thhalv10004000m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 2.3e-07 59.3 119 31.1
SEGI_40826 Sequoiadendron giganteum HOM05D003325 ORTHO05D003852 8.7e-07 57.4 61 49.2
FAN18G2108 Fragaria x ananassa HOM05D003325 ORTHO05D003852 5.6e-06 54.7 147 27.2


User provided reference genes

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