Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 1.1e-63 246.5 124 100.0
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 3.1e-55 218.4 114 94.7
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 3.4e-54 214.9 114 92.1
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 7.6e-54 213.8 114 93.0
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 6.5e-53 210.7 114 90.4
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 6.5e-53 210.7 114 90.4
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 1.1e-52 209.9 114 89.5
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 2.5e-52 208.8 114 90.4
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 5.5e-52 207.6 114 89.5
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 1.2e-51 206.5 114 89.5
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.2e-51 206.5 114 88.6
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.2e-51 206.5 114 88.6
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 2.7e-51 205.3 114 87.7
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 2.7e-51 205.3 114 87.7
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 2.7e-51 205.3 122 82.0
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 3.5e-51 204.9 114 88.6
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 1.0e-50 203.4 114 88.6
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 3.0e-50 201.8 114 85.1
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 3.9e-50 201.4 124 80.6
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 6.7e-50 200.7 114 86.0
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 6.7e-50 200.7 114 87.7
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.1e-49 199.9 124 81.5
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 1.1e-49 199.9 114 86.0
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.5e-49 199.5 114 85.1
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 1.5e-49 199.5 114 85.1
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.9e-49 199.1 114 85.1
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 3.3e-49 198.4 114 84.2
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 4.3e-49 198.0 114 86.0
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 5.7e-49 197.6 114 86.8
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 5.7e-49 197.6 114 83.3
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 5.7e-49 197.6 114 85.1
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 5.7e-49 197.6 114 84.2
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 5.7e-49 197.6 113 86.7
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 9.7e-49 196.8 114 81.6
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 1.3e-48 196.4 114 84.2
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 1.6e-48 196.1 114 84.2
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 1.6e-48 196.1 114 85.1
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 1.6e-48 196.1 114 83.3
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 1.6e-48 196.1 114 83.3
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 2.2e-48 195.7 114 82.5
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 2.2e-48 195.7 114 86.0
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 2.2e-48 195.7 124 76.6
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 2.8e-48 195.3 114 85.1
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 2.8e-48 195.3 114 80.7
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 3.7e-48 194.9 114 83.3
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 3.7e-48 194.9 114 83.3
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 3.7e-48 194.9 114 82.5
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 4.8e-48 194.5 114 80.7
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 4.8e-48 194.5 114 82.5
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 4.8e-48 194.5 114 82.5
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 4.8e-48 194.5 114 83.3
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 6.3e-48 194.1 114 78.9
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 6.3e-48 194.1 114 82.5
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 6.3e-48 194.1 114 84.2
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 1.1e-47 193.4 114 79.8
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.1e-47 193.4 114 81.6
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 1.1e-47 193.4 114 81.6
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 1.4e-47 193.0 114 83.3
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 1.4e-47 193.0 114 82.5
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.4e-47 193.0 114 82.5
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.4e-47 193.0 114 82.5
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.4e-47 193.0 114 82.5
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 1.4e-47 193.0 114 83.3
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 2.4e-47 192.2 114 83.3
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.4e-47 192.2 114 81.6
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 2.4e-47 192.2 114 81.6
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 3.1e-47 191.8 114 80.7
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.1e-47 191.4 114 81.6
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 4.1e-47 191.4 114 78.9
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 4.1e-47 191.4 114 81.6
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 4.1e-47 191.4 114 83.3
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 9.0e-47 190.3 114 79.8
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 1.2e-46 189.9 114 77.2
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 1.5e-46 189.5 114 77.2
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 1.5e-46 189.5 114 77.2
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 1.5e-46 189.5 114 77.2
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 1.5e-46 189.5 114 77.2
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 2.6e-46 188.7 114 79.8
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 3.4e-46 188.3 114 76.3
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 3.4e-46 188.3 114 75.4
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 4.5e-46 188.0 114 76.3
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 4.5e-46 188.0 114 83.3
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 4.5e-46 188.0 114 79.8
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 5.9e-46 187.6 114 75.4
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 5.9e-46 187.6 114 75.4
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 5.9e-46 187.6 114 75.4
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 5.9e-46 187.6 114 82.5
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 5.9e-46 187.6 129 73.6
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 5.9e-46 187.6 114 79.8
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 1.0e-45 186.8 114 78.9
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.0e-45 186.8 114 81.6
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 1.3e-45 186.4 114 81.6
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 1.3e-45 186.4 114 76.3
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 1.7e-45 186.0 117 79.5
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 2.2e-45 185.7 113 81.4
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 2.9e-45 185.3 114 78.9
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.8e-45 184.9 114 78.9
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 5.0e-45 184.5 115 75.7
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 5.0e-45 184.5 115 75.7
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 8.5e-45 183.7 146 67.8
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 1.4e-44 183.0 114 80.7
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.9e-44 182.6 120 74.2
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.9e-44 182.6 114 78.9
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 1.9e-44 182.6 114 77.2
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 3.2e-44 181.8 116 75.9
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 9.4e-44 180.3 136 69.1
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 1.8e-42 176.0 114 75.4
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 3.9e-42 174.9 93 90.3
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.5e-41 172.9 114 72.8
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 5.7e-41 171.0 93 88.2
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 5.7e-41 171.0 93 88.2
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 5.7e-41 171.0 124 67.7
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 1.7e-40 169.5 112 72.3
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 2.2e-40 169.1 114 68.4
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 2.8e-40 168.7 95 84.2
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 4.8e-40 167.9 126 71.4
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 6.3e-40 167.5 114 67.5
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 3.1e-39 165.2 98 81.6
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 3.1e-39 165.2 98 81.6
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 4.1e-39 164.9 114 74.6
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 6.9e-39 164.1 98 79.6
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 6.9e-39 164.1 93 84.9
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 3.4e-38 161.8 93 82.8
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 4.5e-38 161.4 124 64.5
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 5.0e-37 157.9 125 63.2
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 6.5e-37 157.5 124 70.2
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 2.1e-35 152.5 124 62.9
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 3.9e-34 148.3 114 62.3
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.2e-32 142.5 83 79.5
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.3e-32 141.0 109 60.6
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.1e-31 138.3 120 56.7
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 7.0e-31 137.5 93 69.9
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 9.1e-31 137.1 84 78.6
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 1.2e-30 136.7 124 61.3
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.3e-29 133.3 73 84.9
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.6e-22 109.8 61 80.3
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 9.4e-20 100.5 117 46.2
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 2.1e-19 99.4 66 66.7
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 4.8e-16 88.2 54 75.9
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 7.0e-15 84.3 128 41.4
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 4.2e-12 75.1 114 41.2
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 3.6e-11 72.0 34 100.0
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 3.6e-11 72.0 34 100.0
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 6.8e-10 67.8 34 94.1
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 5.7e-09 64.7 97 35.1
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.3e-08 60.8 34 82.4
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 2.4e-07 59.3 40 70.0
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 2.4e-07 59.3 40 70.0
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 7.0e-07 57.8 96 31.2
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 2.0e-06 56.2 37 73.0
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 2.7e-06 55.8 34 76.5
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 3.5e-06 55.5 96 29.2


User provided reference genes

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