Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 5.8e-195 684.1 361 100.0
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 3.1e-164 582.0 358 86.6
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 4.2e-161 571.6 365 84.1
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 5.7e-158 561.2 357 83.2
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 1.2e-147 526.9 372 77.4
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 2.2e-146 522.7 362 78.2
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 6.5e-146 521.2 362 76.5
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 9.7e-142 507.3 371 73.6
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 7.0e-140 501.1 365 76.2
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 1.6e-139 500.0 366 72.7
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 3.5e-139 498.8 366 72.4
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 4.2e-137 491.9 366 72.1
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 2.3e-122 443.0 363 64.2
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 4.7e-120 435.3 360 63.9
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 6.8e-119 431.4 366 63.1
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 9.8e-118 427.6 364 62.6
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 4.9e-117 425.2 365 61.1
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 7.0e-116 421.4 363 61.7
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 9.2e-116 421.0 363 62.0
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.0e-115 419.9 359 61.8
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 3.5e-115 419.1 359 61.6
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 4.6e-115 418.7 359 61.3
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 4.6e-115 418.7 359 61.3
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 4.6e-115 418.7 357 61.3
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 3.0e-114 416.0 359 61.0
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 4.3e-113 412.1 359 61.0
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 9.5e-113 411.0 364 59.9
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 9.5e-113 411.0 357 60.5
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 1.2e-112 410.6 361 59.6
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 2.1e-112 409.8 362 58.6
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 2.8e-112 409.5 359 60.2
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 2.8e-112 409.5 364 60.4
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 3.6e-112 409.1 360 60.6
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 6.2e-112 408.3 364 59.1
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 8.0e-112 407.9 365 60.3
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 1.4e-111 407.1 368 58.7
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 1.8e-111 406.8 369 59.3
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 1.8e-111 406.8 362 58.6
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 1.8e-111 406.8 363 59.8
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 5.2e-111 405.2 406 55.7
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 6.8e-111 404.8 362 60.8
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 1.5e-110 403.7 362 59.1
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 3.4e-110 402.5 339 61.7
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 4.4e-110 402.1 365 60.0
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 2.2e-109 399.8 364 58.5
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 6.4e-109 398.3 365 58.9
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 3.2e-108 396.0 359 59.9
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 1.2e-107 394.0 365 57.8
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 1.6e-107 393.7 363 59.8
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 2.0e-107 393.3 351 60.1
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 3.5e-107 392.5 364 57.7
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 7.8e-107 391.3 359 59.6
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 3.9e-106 389.0 360 57.8
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 6.6e-106 388.3 360 58.9
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 1.1e-105 387.5 369 55.8
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 4.3e-105 385.6 356 57.9
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 2.1e-104 383.3 369 56.1
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 6.2e-104 381.7 353 59.5
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 8.1e-104 381.3 409 54.0
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 3.1e-103 379.4 353 57.5
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 4.0e-103 379.0 343 58.6
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 5.2e-103 378.6 357 56.0
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 1.7e-101 373.6 347 58.8
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 2.2e-101 373.2 368 56.5
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 6.4e-101 371.7 331 61.0
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 1.6e-99 367.1 354 54.8
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 2.7e-99 366.3 413 51.1
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 7.8e-99 364.8 355 55.8
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 1.3e-98 364.0 354 54.5
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 1.7e-98 363.6 364 51.6
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 6.6e-98 361.7 355 53.5
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.5e-97 360.5 355 53.5
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.5e-97 360.5 354 53.7
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 3.3e-97 359.4 339 56.6
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 1.6e-96 357.1 355 53.5
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.4e-95 354.0 365 52.9
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 3.1e-95 352.8 359 53.5
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 3.1e-95 352.8 305 63.3
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 4.0e-95 352.4 355 53.2
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 6.8e-95 351.7 357 52.7
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 8.9e-95 351.3 355 52.4
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 8.4e-93 344.7 388 49.2
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 1.4e-92 344.0 356 53.1
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 3.2e-92 342.8 321 59.5
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 4.1e-92 342.4 359 52.4
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 4.1e-92 342.4 361 52.1
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 9.2e-92 341.3 347 51.9
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 2.7e-91 339.7 297 58.9
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 4.6e-91 339.0 356 49.7
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 6.6e-90 335.1 357 51.0
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 1.1e-89 334.3 357 51.0
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 4.3e-89 332.4 301 61.8
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 4.3e-89 332.4 245 75.9
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 5.6e-89 332.0 363 50.1
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 9.6e-89 331.3 298 58.4
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 2.1e-88 330.1 365 51.0
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 6.2e-88 328.6 351 51.0
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 1.8e-87 327.0 352 51.1
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 6.9e-87 325.1 307 57.3
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 8.9e-87 324.7 365 49.3
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 2.2e-85 320.1 358 48.6
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 2.9e-85 319.7 311 54.7
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 4.9e-85 318.9 358 48.9
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 2.4e-84 316.6 360 47.2
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 7.1e-84 315.1 346 49.1
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 1.2e-83 314.3 343 49.6
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 4.3e-81 305.8 282 58.9
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 6.9e-79 298.5 356 44.9
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 3.4e-78 296.2 281 57.3
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 4.5e-78 295.8 341 49.0
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 3.6e-72 276.2 355 44.2
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 8.1e-72 275.0 351 46.2
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 1.1e-71 274.6 366 45.4
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 6.4e-69 265.4 348 43.4
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 1.4e-68 264.2 362 40.3
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 1.3e-66 257.7 332 44.3
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.5e-65 254.2 338 44.1
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 9.6e-65 251.5 271 51.7
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 2.2e-61 240.4 241 55.2
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 3.5e-59 233.0 344 42.2
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 6.0e-59 232.3 238 53.8
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 1.9e-57 227.3 354 40.7
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 2.5e-57 226.9 227 53.7
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 1.3e-56 224.6 234 54.3
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 6.5e-45 185.7 318 37.4
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 1.6e-43 181.0 273 43.6
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 3.0e-42 176.8 366 33.3
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 3.0e-42 176.8 298 38.6
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 7.4e-41 172.2 224 47.3
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 2.5e-36 157.1 423 29.6
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 8.8e-34 148.7 127 54.3
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 9.7e-33 145.2 124 60.5
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 6.3e-32 142.5 181 45.3
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 2.3e-26 124.0 372 27.4
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 7.5e-25 119.0 175 43.4
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 3.7e-24 116.7 247 32.4
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 1.4e-15 88.2 152 38.8
PGR142G1573 Punica granatum HOM05D005473 ORTHO05D006543 5.9e-14 82.8 258 29.5
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 1.7e-13 81.3 156 34.0
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 1.2e-11 75.1 329 24.6
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 4.0e-10 70.1 56 62.5
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 4.9e-08 63.2 55 58.2
Medtr4g117060 Medicago truncatula HOM05D005473 ORTHO05D002335 4.9e-08 63.2 51 66.7
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 1.1e-07 62.0 55 56.4


User provided reference genes

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