Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 7.2e-127 457.2 225 100.0
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 8.8e-117 423.7 225 92.4
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 8.3e-115 417.2 232 88.4
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 1.1e-114 416.8 225 89.8
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 1.1e-103 380.2 225 81.8
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 1.6e-102 376.3 225 81.3
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 1.4e-101 373.2 225 80.9
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 9.2e-98 360.5 225 78.7
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 1.7e-96 356.3 225 77.3
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 1.7e-96 356.3 226 77.9
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 8.6e-96 354.0 225 75.1
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.2e-94 350.1 225 74.2
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 2.8e-94 349.0 225 74.2
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 4.7e-94 348.2 225 74.2
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 4.7e-94 348.2 225 74.2
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 4.7e-94 348.2 225 73.8
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 1.8e-93 346.3 225 73.8
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 3.1e-93 345.5 225 74.2
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 5.2e-93 344.7 225 73.3
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 5.2e-93 344.7 225 72.0
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 6.8e-93 344.4 225 73.3
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 2.6e-92 342.4 227 72.7
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 2.6e-92 342.4 227 72.7
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 4.4e-92 341.7 225 72.4
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.3e-91 340.1 227 72.2
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 1.3e-91 340.1 225 74.2
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 1.7e-91 339.7 225 71.6
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 4.9e-91 338.2 225 71.6
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 1.4e-90 336.7 225 72.9
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 1.9e-90 336.3 225 72.4
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 2.4e-90 335.9 225 71.6
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 2.4e-90 335.9 225 71.1
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 2.4e-90 335.9 224 71.9
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 2.4e-90 335.9 225 72.9
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 4.1e-90 335.1 225 72.4
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 9.2e-90 334.0 225 71.6
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 9.2e-90 334.0 223 70.9
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 9.2e-90 334.0 225 71.1
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 1.2e-89 333.6 225 70.7
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 1.6e-89 333.2 225 71.6
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 7.8e-89 330.9 224 71.9
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 7.8e-89 330.9 225 70.7
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 1.0e-88 330.5 225 69.3
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 1.3e-88 330.1 223 72.6
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 1.7e-88 329.7 225 70.2
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 1.7e-88 329.7 225 68.9
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 2.3e-88 329.3 227 72.2
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 3.0e-88 328.9 225 68.4
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 3.9e-88 328.6 225 71.1
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 3.9e-88 328.6 225 71.6
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.1e-87 327.0 225 70.2
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 1.1e-87 327.0 225 71.6
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 1.1e-87 327.0 225 69.8
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.5e-87 326.6 226 71.2
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.5e-87 326.6 226 71.2
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 3.3e-87 325.5 225 68.0
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 4.3e-87 325.1 225 72.4
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 5.6e-87 324.7 225 69.8
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 9.5e-87 323.9 225 69.8
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.2e-86 323.6 225 69.8
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 2.1e-86 322.8 225 69.3
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 2.8e-86 322.4 226 69.5
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 3.6e-86 322.0 226 68.6
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 4.7e-86 321.6 225 69.8
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 1.1e-85 320.5 279 59.9
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 1.4e-85 320.1 225 69.3
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 4.0e-85 318.5 225 68.9
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 4.0e-85 318.5 225 68.9
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 5.2e-85 318.2 225 68.4
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 8.9e-85 317.4 225 67.6
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 2.0e-84 316.2 225 68.4
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 2.6e-84 315.8 225 66.2
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 7.5e-84 314.3 225 67.1
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 1.3e-83 313.5 225 69.3
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 1.3e-83 313.5 225 65.8
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 2.2e-83 312.8 226 66.4
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 2.9e-83 312.4 225 69.3
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 2.9e-83 312.4 225 68.9
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 1.4e-82 310.1 196 75.0
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 1.4e-82 310.1 228 67.1
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 1.9e-82 309.7 225 64.4
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 1.9e-82 309.7 225 67.1
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 4.1e-82 308.5 225 68.4
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 4.1e-82 308.5 225 68.4
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 5.4e-82 308.1 225 67.6
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 1.2e-81 307.0 225 67.1
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 1.2e-81 307.0 208 71.6
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 1.6e-81 306.6 225 67.1
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 1.6e-81 306.6 225 67.1
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 3.5e-81 305.4 225 66.7
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 4.6e-81 305.1 225 64.0
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 6.0e-81 304.7 266 59.0
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 1.3e-80 303.5 227 67.8
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 1.7e-80 303.1 196 73.0
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 1.7e-80 303.1 260 60.4
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 4.7e-78 295.0 228 64.5
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 5.2e-77 291.6 227 62.6
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 8.9e-77 290.8 227 63.0
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 6.4e-75 284.6 225 63.6
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 1.4e-74 283.5 225 64.4
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 4.1e-74 282.0 225 63.1
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 7.1e-74 281.2 245 59.6
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 1.3e-72 276.9 225 59.1
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 1.7e-72 276.6 225 64.0
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 2.3e-72 276.2 225 58.7
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 2.8e-70 269.2 177 74.0
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 2.8e-70 269.2 225 61.8
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 6.2e-70 268.1 217 60.4
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 2.4e-69 266.2 217 60.4
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 3.4e-68 262.3 227 58.1
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 8.4e-67 257.7 210 59.0
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 1.1e-66 257.3 225 60.9
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 9.6e-63 244.2 225 59.1
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 2.1e-62 243.0 226 54.4
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 2.4e-61 239.6 174 67.2
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 6.4e-59 231.5 229 56.3
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 6.4e-59 231.5 225 51.6
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 1.1e-58 230.7 252 50.8
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 1.1e-58 230.7 252 50.8
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 1.8e-53 213.4 249 49.4
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 1.8e-53 213.4 225 51.6
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 5.3e-53 211.8 225 48.9
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 6.4e-51 204.9 225 46.7
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 5.5e-50 201.8 164 62.8
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 8.1e-46 188.0 122 71.3
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 1.9e-42 176.8 206 44.7
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 3.2e-42 176.0 231 41.6
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 1.3e-40 170.6 228 43.0
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 1.3e-32 144.1 130 58.5
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 1.8e-32 143.7 139 55.4
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.8e-30 136.3 100 64.0
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.8e-30 135.6 100 64.0
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 2.4e-29 133.3 150 49.3
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.4e-21 107.5 71 66.2
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 5.5e-18 95.5 66 60.6
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 2.0e-15 87.0 78 51.3
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 3.3e-15 86.3 105 45.7
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 7.4e-15 85.1 51 72.5
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 7.4e-15 85.1 51 72.5
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.7e-14 84.0 51 72.5
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.7e-14 84.0 51 72.5
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 6.3e-14 82.0 123 43.1
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 5.3e-13 79.0 97 47.4
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 2.0e-12 77.0 79 50.6
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 8.5e-11 71.6 64 60.9
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 4.2e-10 69.3 207 27.1
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 9.4e-10 68.2 51 66.7
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.4e-08 64.3 51 64.7
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 3.3e-07 59.7 51 54.9
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 1.7e-06 57.4 56 55.4


User provided reference genes

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