Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 3.5e-261 904.8 595 100.0
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 4.6e-197 691.8 537 82.3
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 3.9e-196 688.7 540 79.3
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 3.6e-186 655.6 532 75.6
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 5.3e-169 598.6 533 70.7
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 1.3e-164 583.9 533 68.1
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 3.2e-158 562.8 532 68.6
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 5.1e-156 555.4 526 64.8
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 2.0e-152 543.5 526 65.6
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 1.3e-151 540.8 533 65.9
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 3.2e-150 536.2 530 66.2
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 3.0e-148 529.6 530 65.5
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 1.8e-121 440.7 529 53.9
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 5.9e-120 435.6 525 50.9
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 1.0e-119 434.9 513 62.6
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 2.3e-119 433.7 528 56.8
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 2.9e-119 433.3 517 49.5
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 2.9e-119 433.3 542 54.4
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 1.5e-118 431.0 516 54.1
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 1.5e-118 431.0 542 54.2
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 4.3e-118 429.5 543 49.9
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 4.7e-117 426.0 526 52.5
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.8e-116 424.1 542 54.4
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 4.0e-116 422.9 529 49.3
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 5.2e-116 422.5 515 51.7
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 6.8e-116 422.2 523 51.8
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 6.8e-116 422.2 523 51.8
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 1.5e-115 421.0 536 53.2
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 4.4e-115 419.5 525 51.4
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 4.4e-115 419.5 534 54.1
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 7.5e-115 418.7 517 52.0
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 9.8e-115 418.3 519 50.3
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.3e-114 417.9 539 55.8
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.3e-114 417.9 542 53.1
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 2.9e-114 416.8 531 51.4
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 2.9e-114 416.8 544 55.1
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 6.4e-114 415.6 524 53.4
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 1.8e-113 414.1 535 49.7
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 2.4e-113 413.7 540 54.3
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 3.2e-113 413.3 523 49.5
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 9.2e-113 411.8 536 55.8
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.2e-112 411.4 523 49.3
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 1.2e-112 411.4 540 53.9
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 1.2e-112 411.4 535 55.9
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 3.5e-112 409.8 524 48.7
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 5.9e-112 409.1 540 49.1
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 5.9e-112 409.1 523 53.0
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 1.3e-111 407.9 510 47.8
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 3.0e-111 406.8 552 53.3
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 1.2e-109 401.4 523 48.0
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 1.2e-107 394.8 539 47.3
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 7.8e-104 382.1 537 51.8
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 1.3e-103 381.3 555 52.1
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 3.9e-103 379.8 527 51.0
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 6.6e-103 379.0 531 54.4
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 2.5e-102 377.1 548 49.3
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 5.6e-102 375.9 465 55.7
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 1.2e-101 374.8 547 56.3
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.2e-101 374.8 547 56.3
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.8e-101 373.6 541 55.6
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.8e-101 373.6 549 52.6
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 4.7e-101 372.9 555 53.9
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 8.1e-101 372.1 523 48.8
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.4e-100 371.3 527 51.4
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 4.0e-100 369.8 569 48.0
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 8.9e-100 368.6 478 51.5
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 1.5e-99 367.9 532 50.8
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 2.0e-99 367.5 533 51.6
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 7.5e-99 365.5 534 49.1
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 2.9e-98 363.6 528 48.3
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 5.4e-97 359.4 574 46.5
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 5.4e-97 359.4 480 53.8
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 6.0e-96 355.9 544 49.6
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 1.0e-95 355.1 526 53.6
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 6.6e-95 352.4 554 51.4
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 1.5e-94 351.3 515 52.8
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 5.6e-94 349.4 535 48.4
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 1.6e-93 347.8 530 58.3
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 3.1e-92 343.6 466 56.4
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.5e-91 341.3 533 47.1
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 3.4e-91 340.1 531 53.9
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 7.6e-91 339.0 528 56.1
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 9.9e-91 338.6 530 57.7
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 2.2e-90 337.4 526 46.0
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.1e-89 335.1 513 54.0
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 1.4e-89 334.7 534 56.4
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 2.4e-89 334.0 532 52.6
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 2.1e-88 330.9 532 53.9
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 3.9e-87 326.6 528 53.4
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 6.2e-85 319.3 526 44.5
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 4.0e-84 316.6 291 59.5
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 1.2e-83 315.1 545 45.9
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 1.2e-83 315.1 518 50.6
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 3.8e-82 310.1 434 52.8
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 3.8e-82 310.1 462 43.1
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 1.1e-81 308.5 534 45.3
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 3.4e-75 287.0 554 40.8
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 1.2e-72 278.5 538 40.3
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 6.6e-71 272.7 527 41.9
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 3.3e-70 270.4 547 41.1
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 1.6e-69 268.1 431 45.5
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 2.4e-68 264.2 550 40.9
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 2.2e-66 257.7 204 63.2
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 9.3e-65 252.3 440 40.5
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 2.7e-64 250.8 440 38.4
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 1.1e-62 245.4 542 35.2
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 8.1e-61 239.2 392 50.0
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 7.1e-57 226.1 489 40.9
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 1.1e-54 218.8 306 40.2
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 3.6e-48 197.2 192 52.1
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 4.3e-46 190.3 192 53.6
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 1.3e-45 188.7 155 61.9
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 3.7e-45 187.2 724 29.0
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 1.5e-43 181.8 196 49.5
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 2.0e-43 181.4 229 43.2
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 6.5e-42 176.4 531 36.7
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.4e-36 158.7 510 31.2
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 1.4e-36 158.7 243 36.2
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 9.1e-36 156.0 263 51.7
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 2.6e-35 154.5 275 49.8
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 1.7e-34 151.8 276 44.6
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 2.2e-34 151.4 234 36.3
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 7.7e-27 126.3 109 61.5
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 4.7e-24 117.1 265 43.4
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 6.1e-24 116.7 162 43.8
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 6.7e-23 113.2 111 51.4
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 5.7e-22 110.2 104 54.8
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 6.3e-21 106.7 122 54.9
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 1.1e-20 105.9 88 56.8
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 1.1e-20 105.9 214 36.0
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 1.6e-19 102.1 107 57.0
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 1.1e-17 95.9 158 46.8
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 2.2e-13 81.6 144 41.7
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 9.1e-12 76.3 315 27.9
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.1e-09 69.3 150 33.3
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 5.5e-09 67.0 60 60.0
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 3.6e-08 64.3 58 56.9
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 6.8e-07 60.1 48 54.2
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 4.4e-06 57.4 136 33.8
FAN03G2005 Fragaria x ananassa HOM05D004723 ORTHO05D002269 5.7e-06 57.0 70 44.3
FAN22G1655 Fragaria x ananassa HOM05D002244 ORTHO05D035452 5.7e-06 57.0 60 46.7


User provided reference genes

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