Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 1.1e-182 643.3 338 100.0
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 3.6e-154 548.5 299 94.0
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 1.7e-143 513.1 306 86.9
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 6.1e-138 494.6 305 84.9
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 6.1e-138 494.6 305 84.9
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 6.3e-127 458.0 305 79.7
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 9.2e-126 454.1 308 78.2
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 3.8e-124 448.7 310 77.1
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 2.2e-119 433.0 319 73.7
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 8.3e-119 431.0 319 73.7
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 1.4e-118 430.3 309 74.1
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 3.5e-117 425.6 309 74.4
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 1.1e-115 420.6 303 73.3
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 1.1e-110 404.1 289 71.6
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 6.0e-109 398.3 292 70.5
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 1.7e-108 396.7 289 70.6
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 3.9e-108 395.6 288 71.5
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 5.0e-108 395.2 268 75.4
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 5.0e-108 395.2 285 72.6
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 1.1e-107 394.0 287 70.0
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 1.5e-107 393.7 260 76.5
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 1.5e-107 393.7 276 73.2
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 1.5e-107 393.7 300 69.7
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 2.5e-107 392.9 276 73.6
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 7.3e-107 391.3 266 74.4
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 1.6e-106 390.2 266 74.8
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 2.8e-106 389.4 262 75.6
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 3.6e-106 389.0 293 69.3
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 4.7e-106 388.7 262 76.0
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 8.1e-106 387.9 288 69.4
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 8.1e-106 387.9 288 68.8
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.1e-105 387.5 266 75.6
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 1.1e-105 387.5 271 73.4
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.1e-105 387.5 262 75.6
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 1.8e-105 386.7 288 68.4
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 2.3e-105 386.3 256 77.0
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 2.3e-105 386.3 271 73.4
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 3.1e-105 386.0 266 75.2
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 4.0e-105 385.6 314 66.6
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 4.0e-105 385.6 297 67.0
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 4.0e-105 385.6 284 70.4
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 5.2e-105 385.2 288 69.1
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 6.8e-105 384.8 266 75.2
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 6.8e-105 384.8 265 73.6
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 8.9e-105 384.4 272 72.4
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 1.2e-104 384.0 252 78.2
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 1.5e-104 383.6 291 68.0
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 3.4e-104 382.5 256 75.8
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 4.4e-104 382.1 263 74.1
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 7.5e-104 381.3 301 65.8
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 9.8e-104 380.9 256 74.2
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 9.8e-104 380.9 258 73.6
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 9.8e-104 380.9 261 73.2
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 1.7e-103 380.2 301 65.8
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 2.2e-103 379.8 286 68.9
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 2.2e-103 379.8 266 73.3
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 2.2e-103 379.8 270 71.9
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 2.9e-103 379.4 288 67.7
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 2.9e-103 379.4 262 72.5
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 3.7e-103 379.0 262 72.1
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 8.3e-103 377.9 272 71.0
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 8.3e-103 377.9 302 65.2
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 3.2e-102 375.9 259 72.6
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 5.4e-102 375.2 299 66.2
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 9.2e-102 374.4 296 66.2
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 1.2e-101 374.0 292 66.1
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.2e-101 374.0 292 66.1
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.2e-101 374.0 292 66.1
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 1.2e-101 374.0 214 84.6
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 1.2e-101 374.0 214 84.6
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 1.6e-101 373.6 259 73.0
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 2.1e-101 373.2 288 68.8
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 4.6e-101 372.1 250 75.6
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 7.8e-101 371.3 267 71.2
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 7.8e-101 371.3 267 70.4
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 7.8e-101 371.3 292 66.4
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.0e-100 370.9 250 75.6
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 1.3e-100 370.5 295 67.5
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 1.3e-100 370.5 259 72.6
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 1.3e-100 370.5 265 71.3
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.3e-100 370.5 255 74.1
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.7e-100 370.2 250 75.6
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 2.3e-100 369.8 268 70.1
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 3.9e-100 369.0 262 72.1
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 3.9e-100 369.0 255 73.7
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 8.6e-100 367.9 309 63.4
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 8.6e-100 367.9 265 71.3
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.1e-99 367.5 215 83.7
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 1.9e-99 366.7 274 68.2
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.9e-99 366.7 282 67.7
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 2.5e-99 366.3 232 78.0
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 2.5e-99 366.3 232 78.0
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 2.5e-99 366.3 270 69.3
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 3.3e-99 365.9 234 76.9
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 3.3e-99 365.9 247 76.1
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 4.3e-99 365.5 257 74.7
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 1.2e-98 364.0 269 68.8
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 1.2e-98 364.0 261 69.3
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 1.6e-98 363.6 242 75.6
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 2.1e-98 363.2 268 69.4
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 2.1e-98 363.2 286 68.5
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 2.8e-98 362.8 260 70.8
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 2.8e-98 362.8 282 65.2
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 3.6e-98 362.5 228 78.5
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 3.6e-98 362.5 267 67.8
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 4.7e-98 362.1 286 66.1
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 6.2e-98 361.7 267 69.3
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 8.1e-98 361.3 259 70.7
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 8.1e-98 361.3 212 83.5
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 8.1e-98 361.3 301 65.1
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 1.4e-97 360.5 305 64.6
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 1.4e-97 360.5 268 69.0
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 3.1e-97 359.4 251 71.3
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 4.4e-96 355.5 279 68.5
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 4.4e-96 355.5 256 70.3
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 9.9e-96 354.4 297 64.3
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 3.2e-94 349.4 290 63.1
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 9.2e-94 347.8 346 57.2
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.2e-93 347.4 232 75.4
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 7.8e-93 344.7 337 58.8
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 7.8e-93 344.7 255 70.6
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 1.3e-92 344.0 201 84.6
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 2.3e-92 343.2 280 63.9
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 3.9e-92 342.4 258 71.3
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 3.6e-90 335.9 240 69.6
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 3.4e-88 329.3 292 62.0
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 4.4e-88 328.9 258 66.7
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 5.8e-88 328.6 279 62.7
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 9.9e-88 327.8 186 84.4
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 1.7e-87 327.0 238 69.7
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 6.4e-87 325.1 226 73.5
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 1.4e-86 323.9 205 75.6
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 4.2e-86 322.4 206 75.2
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 1.2e-85 320.9 297 60.3
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 2.3e-84 316.6 260 66.2
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 6.6e-84 315.1 232 69.4
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 6.4e-79 298.5 314 57.3
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 4.2e-78 295.8 210 67.1
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 4.5e-72 275.8 203 67.0
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 1.7e-71 273.9 209 63.2
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 4.6e-69 265.8 245 59.6
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 1.0e-63 248.1 195 65.1
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 1.5e-59 234.2 155 76.1
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 7.4e-59 231.9 155 75.5
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 5.3e-57 225.7 173 64.7
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 1.5e-56 224.2 156 69.2
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.8e-36 157.5 99 80.8
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 3.0e-36 156.8 99 79.8
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 7.0e-33 145.6 111 66.7
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 7.7e-32 142.1 131 58.0
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 4.1e-25 119.8 63 92.1
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 1.0e-23 115.2 102 61.8
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 3.5e-08 63.5 34 85.3
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 1.5e-06 58.2 34 79.4


User provided reference genes

Program Settings