Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 2.2e-123 445.7 230 100.0
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 2.2e-75 286.2 238 67.6
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 1.8e-72 276.6 244 65.6
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 5.2e-72 275.0 231 66.2
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 6.2e-49 198.4 232 55.2
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 6.8e-48 194.9 231 55.0
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 2.0e-47 193.4 231 54.1
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 1.6e-44 183.7 237 51.9
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 7.8e-44 181.4 238 50.4
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 8.6e-43 177.9 241 50.6
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 5.6e-42 175.3 232 50.9
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 1.6e-41 173.7 253 49.0
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 9.9e-39 164.5 262 48.5
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 2.2e-38 163.3 254 50.0
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 1.1e-37 161.0 238 47.1
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 1.1e-37 161.0 238 47.1
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 9.2e-37 157.9 235 46.4
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 9.2e-37 157.9 253 47.0
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 2.7e-36 156.4 267 44.6
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 4.6e-36 155.6 264 45.5
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 4.6e-36 155.6 254 47.6
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.3e-35 154.1 255 45.9
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 1.3e-35 154.1 249 47.8
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 1.7e-35 153.7 262 43.5
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.7e-35 153.7 255 45.9
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 2.3e-35 153.3 235 46.0
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 2.3e-35 153.3 235 46.0
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 3.0e-35 152.9 280 43.6
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 3.9e-35 152.5 267 46.1
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 3.9e-35 152.5 260 43.5
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 5.1e-35 152.1 260 43.8
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 6.6e-35 151.8 264 45.5
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.1e-34 151.0 254 46.9
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.1e-34 151.0 264 43.6
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.5e-34 150.6 260 43.1
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 1.9e-34 150.2 264 44.3
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 3.3e-34 149.4 254 46.5
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.3e-34 149.1 255 43.9
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 5.6e-34 148.7 260 43.8
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 7.3e-34 148.3 262 43.5
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.5e-34 147.9 255 44.3
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.5e-34 147.9 253 44.7
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.5e-34 147.9 253 44.7
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.2e-33 147.5 269 44.2
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.2e-33 147.5 255 44.3
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 1.6e-33 147.1 191 52.9
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.6e-33 147.1 191 52.9
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.1e-33 146.7 263 41.1
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 2.8e-33 146.4 194 52.6
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 3.6e-33 146.0 280 41.4
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 3.6e-33 146.0 257 44.0
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 6.2e-33 145.2 261 42.5
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 8.1e-33 144.8 254 46.5
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.1e-32 144.4 264 43.2
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 1.1e-32 144.4 197 49.7
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.1e-32 144.4 265 44.5
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 1.4e-32 144.1 256 41.0
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.4e-32 144.1 253 47.0
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 1.8e-32 143.7 267 43.4
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 1.8e-32 143.7 258 41.1
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 3.1e-32 142.9 248 46.4
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 3.1e-32 142.9 262 42.7
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 3.1e-32 142.9 267 42.7
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 4.0e-32 142.5 253 41.5
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 4.0e-32 142.5 188 52.1
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 5.2e-32 142.1 267 43.1
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 5.2e-32 142.1 275 42.2
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 5.2e-32 142.1 183 53.0
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 5.2e-32 142.1 254 42.5
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 5.2e-32 142.1 255 43.5
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 6.8e-32 141.7 271 41.3
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 6.8e-32 141.7 264 43.9
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 6.8e-32 141.7 192 50.5
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 8.9e-32 141.4 264 41.3
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 8.9e-32 141.4 178 51.1
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.9e-32 141.4 188 51.6
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.9e-32 141.4 188 51.6
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 1.5e-31 140.6 270 42.2
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.5e-31 140.6 198 50.5
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 2.0e-31 140.2 251 45.4
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.6e-31 139.8 261 44.4
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.6e-31 139.8 267 41.9
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 4.4e-31 139.0 246 43.9
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 7.6e-31 138.3 268 41.0
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 9.9e-31 137.9 273 41.0
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 1.7e-30 137.1 260 38.8
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 2.2e-30 136.7 263 41.8
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 3.8e-30 136.0 258 41.9
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 3.8e-30 136.0 261 41.8
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 3.8e-30 136.0 255 42.0
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 4.9e-30 135.6 161 55.3
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 4.9e-30 135.6 268 44.0
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.9e-30 135.6 184 50.5
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 1.9e-29 133.7 267 42.3
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 2.4e-29 133.3 246 43.5
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 2.4e-29 133.3 264 43.2
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 4.2e-29 132.5 159 52.8
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 4.2e-29 132.5 164 52.4
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 9.2e-29 131.3 264 42.8
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 9.2e-29 131.3 211 46.4
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 1.2e-28 131.0 269 42.4
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 1.2e-28 131.0 301 38.5
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 2.1e-28 130.2 189 48.1
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 2.1e-28 130.2 172 54.1
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 7.8e-28 128.3 246 40.7
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 7.8e-28 128.3 266 40.6
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 7.8e-28 128.3 268 39.9
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 1.0e-27 127.9 265 43.0
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 1.0e-27 127.9 194 46.9
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 1.3e-27 127.5 180 51.1
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 1.3e-27 127.5 264 40.2
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.7e-27 127.1 248 39.5
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 2.3e-27 126.7 268 42.9
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 2.3e-27 126.7 252 40.1
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 2.3e-27 126.7 173 51.4
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 2.3e-27 126.7 169 50.9
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 3.0e-27 126.3 194 45.9
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 3.9e-27 125.9 190 46.8
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 5.1e-27 125.6 191 49.2
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 6.6e-27 125.2 268 39.6
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 6.6e-27 125.2 265 40.0
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 8.7e-27 124.8 258 41.1
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 8.7e-27 124.8 191 49.2
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 1.1e-26 124.4 210 45.2
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 3.3e-26 122.9 242 38.8
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 5.6e-26 122.1 209 45.0
Medtr7g007430 Medicago truncatula HOM05D000048 ORTHO05D003885 7.3e-26 121.7 106 67.0
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 1.3e-25 120.9 258 40.7
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.3e-25 120.9 169 47.3
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 1.6e-25 120.6 248 39.9
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 1.1e-24 117.9 165 50.3
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 1.4e-24 117.5 308 35.7
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 2.4e-24 116.7 246 39.8
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 3.1e-24 116.3 245 39.6
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 4.0e-24 115.9 245 38.4
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 5.3e-24 115.5 249 39.4
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 5.3e-24 115.5 241 37.3
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 9.0e-24 114.8 174 47.7
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 1.5e-23 114.0 197 46.2
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 1.5e-23 114.0 179 47.5
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 4.4e-23 112.5 202 43.1
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 3.8e-22 109.4 173 45.1
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 6.4e-22 108.6 163 46.0
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 1.9e-21 107.1 206 40.3
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 1.9e-21 107.1 163 46.6
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 3.2e-21 106.3 234 35.5
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 3.2e-21 106.3 238 37.8
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 4.2e-21 105.9 236 35.2
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 2.7e-20 103.2 240 36.2
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 3.5e-20 102.8 248 38.3
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.5e-20 102.8 204 40.7
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 4.6e-20 102.4 235 35.7
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 1.7e-19 100.5 173 41.6
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 2.3e-19 100.1 173 45.7
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 5.1e-19 99.0 147 47.6
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 1.5e-18 97.4 237 37.6
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 7.3e-18 95.1 260 36.2
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 4.8e-17 92.4 243 36.6
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.4e-16 90.1 248 35.1
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 5.3e-16 89.0 240 33.8
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 4.9e-14 82.4 247 33.6
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 7.1e-13 78.6 76 60.5
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 7.1e-13 78.6 127 48.0
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 3.5e-12 76.3 73 58.9
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 2.3e-11 73.6 217 31.8
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 2.3e-11 73.6 341 27.3
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.1e-10 71.2 109 45.9
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 1.9e-10 70.5 73 56.2
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 2.5e-10 70.1 203 36.0
Phvul.011G101601 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 2.5e-10 70.1 116 44.8
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 7.4e-10 68.6 51 68.6
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 7.4e-10 68.6 62 59.7
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 9.6e-10 68.2 178 38.2
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 1.6e-09 67.4 114 43.9
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 1.8e-08 63.9 170 35.9
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 3.1e-08 63.2 64 57.8
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 1.5e-07 60.8 163 34.4
FAN05G3047 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.6e-07 60.1 63 58.7
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 5.8e-07 58.9 137 36.5
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 5.8e-07 58.9 169 32.0
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.7e-06 57.4 64 56.2
Os02g0591500 Oryza sativa ssp. japonica HOM05D020767 ORTHO05D003885 1.7e-06 57.4 240 29.6
ECA234G0160 Erigeron canadensis HOM05D003503 ORTHO05D003885 2.2e-06 57.0 61 62.3


User provided reference genes

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