Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4780 Trifolium pratense HOM05D000200 ORTHO05D411321 1.4e-63 246.1 128 100.0
TPR.G34591 Trifolium pratense HOM05D000200 ORTHO05D001546 2.7e-14 82.4 53 81.1
Medtr8g464480 Medicago truncatula HOM05D000200 ORTHO05D001546 6.8e-13 77.8 53 77.4
Lj8A160G68 Lonicera japonica HOM05D000200 ORTHO05D001546 3.1e-10 68.9 53 67.9
Ca_23011_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 7.0e-10 67.8 53 67.9
Dinv08342 Davidia involucrata HOM05D000200 ORTHO05D001546 7.0e-10 67.8 54 63.0
Actinidia18743 Actinidia chinensis HOM05D000200 ORTHO05D001546 9.1e-10 67.4 53 66.0
Lalb_Chr03g0030391 Lupinus albus HOM05D000200 ORTHO05D001546 9.1e-10 67.4 55 65.5
Atru.chr2.2907 Acer truncatum HOM05D000200 ORTHO05D001546 1.6e-09 66.6 53 66.0
RhsimUnG0258700 Rhododendron simsii HOM05D000200 ORTHO05D001546 1.6e-09 66.6 53 62.3
CSS0024601 Camellia sinensis var. sinensis HOM05D000200 ORTHO05D001546 3.5e-09 65.5 53 62.3
DCAR_012726 Daucus carota HOM05D000200 ORTHO05D001546 3.5e-09 65.5 53 62.3
MBI02_g35901_MAGBIO Magnolia biondii HOM05D000200 ORTHO05D001546 3.5e-09 65.5 51 66.7
SGA_v2.0_scaffold73G24318 Striga asiatica HOM05D000200 ORTHO05D001546 3.5e-09 65.5 53 62.3
Actinidia35280 Actinidia chinensis HOM05D000200 ORTHO05D001546 4.5e-09 65.1 92 44.6
Dinv22364 Davidia involucrata HOM05D000200 ORTHO05D001546 4.5e-09 65.1 53 62.3
Lalb_Chr01g0006401 Lupinus albus HOM05D000200 ORTHO05D001546 4.5e-09 65.1 53 66.0
MBI02_g05992_MAGBIO Magnolia biondii HOM05D000200 ORTHO05D001546 4.5e-09 65.1 67 55.2
Haze_09530 Corylus avellana HOM05D000200 ORTHO05D001546 5.9e-09 64.7 70 52.9
QL08p017742 Quercus lobata HOM05D000200 ORTHO05D001546 5.9e-09 64.7 53 64.2
Glyma.12G147000 Glycine max HOM05D000200 ORTHO05D001546 7.7e-09 64.3 49 67.3
Nn1g06752 Nelumbo nucifera HOM05D000200 ORTHO05D001546 7.7e-09 64.3 53 66.0
arahy.Tifrunner.gnm1.ann1.9V79C6 Arachis hypogaea HOM05D000200 ORTHO05D001546 1.0e-08 63.9 50 68.0
Eucgr.F03356 Eucalyptus grandis HOM05D000200 ORTHO05D001546 1.0e-08 63.9 53 62.3
Lalb_Chr25g0286761 Lupinus albus HOM05D000200 ORTHO05D001546 1.0e-08 63.9 53 66.0
PSO210G1635 Papaver somniferum HOM05D000200 ORTHO05D001546 1.0e-08 63.9 53 66.0
Ciclev10007271m.g Citrus clementina HOM05D000200 ORTHO05D001546 1.3e-08 63.5 53 62.3
TAR626G1962 Trochodendron aralioides HOM05D000200 ORTHO05D001546 1.3e-08 63.5 53 64.2
PSO832G1519 Papaver somniferum HOM05D000200 ORTHO05D001546 1.7e-08 63.2 53 66.0
TAR624G0601 Trochodendron aralioides HOM05D000200 ORTHO05D001546 1.7e-08 63.2 53 64.2
Aqoxy4G01409 Aquilegia oxysepala HOM05D000200 ORTHO05D001546 2.2e-08 62.8 58 58.6
CiPaw.12G122800 Carya illinoinensis HOM05D000200 ORTHO05D001546 2.2e-08 62.8 53 62.3
Psat4g169560 Pisum sativum HOM05D000200 ORTHO05D001546 2.2e-08 62.8 53 66.0
Zm00001eb045250 Zea mays HOM05D000200 ORTHO05D001546 2.2e-08 62.8 53 62.3
CiPaw.11G176700 Carya illinoinensis HOM05D000200 ORTHO05D001546 2.9e-08 62.4 53 60.4
Glyma.06G254500 Glycine max HOM05D000200 ORTHO05D001546 3.8e-08 62.0 49 65.3
Phvul.011G155300 Phaseolus vulgaris HOM05D000200 ORTHO05D001546 5.0e-08 61.6 49 67.3
Nn1g03913 Nelumbo nucifera HOM05D000200 ORTHO05D001546 6.5e-08 61.2 51 64.7
vmacro09561 Vaccinium macrocarpon HOM05D000200 ORTHO05D001546 6.5e-08 61.2 53 58.5
VMungo1127G1735 Vigna mungo HOM05D000200 ORTHO05D001546 6.5e-08 61.2 49 65.3
Aa31LG3G10240 Aethionema arabicum HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 60.4
AL8G29610 Arabidopsis lyrata HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 60.4
AT5G54280 Arabidopsis thaliana HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 60.4
arahy.Tifrunner.gnm1.ann1.JXHR5Z Arachis hypogaea HOM05D000200 ORTHO05D001546 1.5e-07 60.1 50 66.0
BcaB05g22124 Brassica carinata HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 60.4
BcaB08g35786 Brassica carinata HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 60.4
BcaC03g14343 Brassica carinata HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 60.4
BcaC04g20354 Brassica carinata HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 60.4
A02p10430 Brassica napus HOM05D000200 ORTHO05D001546 1.5e-07 60.1 75 49.3
A10p11570 Brassica napus HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 60.4
C02p17190 Brassica napus HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 60.4
C09p44590 Brassica napus HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 60.4
BolC2t07820H Brassica oleracea HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 60.4
BolC9t57332H Brassica oleracea HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 60.4
BraA10t43252Z Brassica rapa HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 60.4
Carub.0008s1463 Capsella rubella HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 60.4
CARHR267570 Cardamine hirsuta HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 60.4
Cc05_g12710 Coffea canephora HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 58.5
Duzib213G0644 Durio zibethinus HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 60.4
Thhalv10012475m.g Eutrema salsugineum HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 60.4
Lalb_Chr20g0110011 Lupinus albus HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 64.2
Medtr1g114540 Medicago truncatula HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 60.4
Potri.001G407000 Populus trichocarpa HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 62.3
Sp6g16320 Schrenkiella parvula HOM05D000200 ORTHO05D001546 1.5e-07 60.1 53 60.4
arahy.Tifrunner.gnm1.ann1.WRW58P Arachis hypogaea HOM05D000200 ORTHO05D001546 1.9e-07 59.7 80 48.8
COL.COLO4_09481 Corchorus olitorius HOM05D000200 ORTHO05D001546 1.9e-07 59.7 53 60.4
Glyma.12G219400 Glycine max HOM05D000200 ORTHO05D001546 1.9e-07 59.7 53 64.2
Lalb_Chr19g0134501 Lupinus albus HOM05D000200 ORTHO05D001546 1.9e-07 59.7 53 62.3
Oeu019364.1 Olea europaea HOM05D000200 ORTHO05D001546 1.9e-07 59.7 51 58.8
Os10g0488800 Oryza sativa ssp. japonica HOM05D000200 ORTHO05D001546 1.9e-07 59.7 53 60.4
Thecc.07G071000 Theobroma cacao HOM05D000200 ORTHO05D001546 1.9e-07 59.7 53 60.4
Ah.04g165400 Amaranthus hybridus HOM05D000200 ORTHO05D001546 2.5e-07 59.3 52 59.6
CSS0049999 Camellia sinensis var. sinensis HOM05D000200 ORTHO05D001546 2.5e-07 59.3 53 56.6
Glyma.13G281900 Glycine max HOM05D000200 ORTHO05D001546 2.5e-07 59.3 51 64.7
CANSAT11G1345 Cannabis sativa HOM05D000200 ORTHO05D001546 3.2e-07 58.9 49 63.3
Sabra07G0063400 Salix brachista HOM05D000200 ORTHO05D001546 3.2e-07 58.9 73 50.7
Duzib170G0125 Durio zibethinus HOM05D000200 ORTHO05D001546 4.2e-07 58.5 53 60.4
PGR031G1990 Punica granatum HOM05D000200 ORTHO05D001546 4.2e-07 58.5 53 60.4
Sabra16G0268400 Salix brachista HOM05D000200 ORTHO05D001546 4.2e-07 58.5 53 62.3
Sabra16G0270700 Salix brachista HOM05D000200 ORTHO05D001546 4.2e-07 58.5 53 62.3
THA.LOC104811845 Tarenaya hassleriana HOM05D000200 ORTHO05D001546 4.2e-07 58.5 53 60.4
GSVIVG01014437001 Vitis vinifera HOM05D000200 ORTHO05D001546 4.2e-07 58.5 53 58.5
arahy.Tifrunner.gnm1.ann1.9FY18V Arachis hypogaea HOM05D000200 ORTHO05D001546 5.5e-07 58.2 53 62.3
arahy.Tifrunner.gnm1.ann1.FHLQ2C Arachis hypogaea HOM05D000200 ORTHO05D001546 5.5e-07 58.2 53 62.3
CSS0011464 Camellia sinensis var. sinensis HOM05D000200 ORTHO05D001546 5.5e-07 58.2 53 58.5
CSS0039822 Camellia sinensis var. sinensis HOM05D000200 ORTHO05D001546 5.5e-07 58.2 53 58.5
DCAR_008700 Daucus carota HOM05D000200 ORTHO05D001546 5.5e-07 58.2 53 58.5
Hma1.2p1_0044F.1_g026280 Hydrangea macrophylla HOM05D000200 ORTHO05D001546 5.5e-07 58.2 53 56.6
Potri.005G089200 Populus trichocarpa HOM05D000200 ORTHO05D001546 5.5e-07 58.2 53 58.5
Potri.007G074800 Populus trichocarpa HOM05D000200 ORTHO05D001546 5.5e-07 58.2 53 58.5
VMungo1080G0534 Vigna mungo HOM05D000200 ORTHO05D001546 5.5e-07 58.2 53 60.4
Nn3g18592 Nelumbo nucifera HOM05D000200 ORTHO05D001546 7.2e-07 57.8 53 58.5
Aa31LG10G3920 Aethionema arabicum HOM05D000200 ORTHO05D001546 9.4e-07 57.4 53 56.6
CiPaw.06G062300 Carya illinoinensis HOM05D000200 ORTHO05D001546 9.4e-07 57.4 53 58.5
AUR62015599 Chenopodium quinoa HOM05D000200 ORTHO05D001546 9.4e-07 57.4 51 56.9
Glyma.10G286300 Glycine max HOM05D000200 ORTHO05D001546 9.4e-07 57.4 53 58.5
Glyma.20G102900 Glycine max HOM05D000200 ORTHO05D001546 9.4e-07 57.4 53 58.5
MBI03_g41224_MAGBIO Magnolia biondii HOM05D000200 ORTHO05D001546 9.4e-07 57.4 53 58.5
Phvul.007G014600 Phaseolus vulgaris HOM05D000200 ORTHO05D001546 9.4e-07 57.4 53 58.5
Psat6g233720 Pisum sativum HOM05D000200 ORTHO05D001546 9.4e-07 57.4 53 58.5
Potri.011G126800 Populus trichocarpa HOM05D000200 ORTHO05D001546 9.4e-07 57.4 53 58.5
TAR629G2757 Trochodendron aralioides HOM05D000200 ORTHO05D001546 9.4e-07 57.4 53 58.5
VMungo0720G1272 Vigna mungo HOM05D000200 ORTHO05D001546 9.4e-07 57.4 53 58.5
GSVIVG01034427001 Vitis vinifera HOM05D000200 ORTHO05D001546 9.4e-07 57.4 53 58.5
Cfa008775 Carpinus fangiana HOM05D000200 ORTHO05D001546 1.2e-06 57.0 53 58.5
Prupe.4G190400 Prunus persica HOM05D000200 ORTHO05D001546 1.2e-06 57.0 51 58.8
Sabra05G0073400 Salix brachista HOM05D000200 ORTHO05D001546 1.2e-06 57.0 57 54.4
TWI39G0397 Tripterygium wilfordii HOM05D000200 ORTHO05D001546 1.2e-06 57.0 68 51.5
HPP92_022656 Vanilla planifolia HOM05D000200 ORTHO05D001546 1.2e-06 57.0 53 56.6
AL7G25430 Arabidopsis lyrata HOM05D000200 ORTHO05D001546 1.6e-06 56.6 68 48.5
AUR62029311 Chenopodium quinoa HOM05D000200 ORTHO05D001546 1.6e-06 56.6 51 56.9
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 1.6e-06 56.6 53 56.6
Lalb_Chr10g0094881 Lupinus albus HOM05D000200 ORTHO05D001546 1.6e-06 56.6 51 58.8
MBI06_g27492_MAGBIO Magnolia biondii HOM05D000200 ORTHO05D001546 1.6e-06 56.6 53 56.6
Sabra11G0110700 Salix brachista HOM05D000200 ORTHO05D001546 1.6e-06 56.6 53 58.5
Sc16g0006760 Simmondsia chinensis HOM05D000200 ORTHO05D001546 1.6e-06 56.6 68 52.9
THA.LOC104799906 Tarenaya hassleriana HOM05D000200 ORTHO05D001546 1.6e-06 56.6 53 60.4
TWI38G1989 Tripterygium wilfordii HOM05D000200 ORTHO05D001546 1.6e-06 56.6 68 51.5
Zm00001eb221190 Zea mays HOM05D000200 ORTHO05D001546 1.6e-06 56.6 53 56.6
ATR0618G226 Amborella trichopoda HOM05D000200 ORTHO05D001546 2.1e-06 56.2 53 58.5
Migut.L00868 Erythranthe guttata HOM05D000200 ORTHO05D001546 2.1e-06 56.2 53 56.6
Phvul.005G085900 Phaseolus vulgaris HOM05D000200 ORTHO05D001546 2.1e-06 56.2 53 60.4
Hund23374 Selenicereus undatus HOM05D000200 ORTHO05D001546 2.1e-06 56.2 51 56.9
CANSAT78G0397 Cannabis sativa HOM05D000200 ORTHO05D001546 2.7e-06 55.8 53 56.6
CiPaw.05G171900 Carya illinoinensis HOM05D000200 ORTHO05D001546 2.7e-06 55.8 53 54.7
MD11G1237000 Malus domestica HOM05D000200 ORTHO05D001546 2.7e-06 55.8 53 52.8
Sc03g0009600 Simmondsia chinensis HOM05D000200 ORTHO05D001546 2.7e-06 55.8 53 56.6
EL10Ac4g08056 Beta vulgaris HOM05D000200 ORTHO05D001546 3.6e-06 55.5 49 57.1
Lj3A846G61 Lonicera japonica HOM05D000200 ORTHO05D001546 3.6e-06 55.5 53 54.7
Lalb_Chr02g0143641 Lupinus albus HOM05D000200 ORTHO05D001546 3.6e-06 55.5 53 56.6
MD16G1004100 Malus domestica HOM05D000200 ORTHO05D001546 3.6e-06 55.5 51 56.9
CARHR040370 Cardamine hirsuta HOM05D000200 ORTHO05D001546 4.7e-06 55.1 53 54.7
Cc11_g00550 Coffea canephora HOM05D000200 ORTHO05D001546 4.7e-06 55.1 53 56.6
TPR.G4106 Trifolium pratense HOM05D000200 ORTHO05D001546 4.7e-06 55.1 53 56.6
Actinidia23692 Actinidia chinensis HOM05D000200 ORTHO05D001546 6.1e-06 54.7 53 56.6
AT4G27370 Arabidopsis thaliana HOM05D000200 ORTHO05D001546 6.1e-06 54.7 68 47.1
arahy.Tifrunner.gnm1.ann1.L4L3GZ Arachis hypogaea HOM05D000200 ORTHO05D001546 6.1e-06 54.7 53 56.6
arahy.Tifrunner.gnm1.ann1.PP514R Arachis hypogaea HOM05D000200 ORTHO05D001546 6.1e-06 54.7 53 56.6
Ca_01802_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 6.1e-06 54.7 53 56.6
Ca_30471_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 6.1e-06 54.7 53 56.6
Thhalv10011193m.g Eutrema salsugineum HOM05D000200 ORTHO05D001546 6.1e-06 54.7 53 54.7
Glyma.09G284800 Glycine max HOM05D000200 ORTHO05D001546 6.1e-06 54.7 49 57.1
Lsat_1_v5_gn_4_27700 Lactuca sativa HOM05D000200 ORTHO05D001546 6.1e-06 54.7 53 54.7
Prupe.1G349100 Prunus persica HOM05D000200 ORTHO05D001546 6.1e-06 54.7 51 56.9
SalBow2G3495 Salvia bowleyana HOM05D000200 ORTHO05D001546 6.1e-06 54.7 53 56.6
Sp7g25300 Schrenkiella parvula HOM05D000200 ORTHO05D001546 6.1e-06 54.7 53 52.8
VMungo0251G0678 Vigna mungo HOM05D000200 ORTHO05D001546 6.1e-06 54.7 49 57.1
Atru.chr11.1236 Acer truncatum HOM05D000200 ORTHO05D001546 8.0e-06 54.3 53 54.7
ATR0693G008 Amborella trichopoda HOM05D000200 ORTHO05D001546 8.0e-06 54.3 53 56.6
A06p03200 Brassica napus HOM05D000200 ORTHO05D001546 8.0e-06 54.3 53 54.7
BraA06t23531Z Brassica rapa HOM05D000200 ORTHO05D001546 8.0e-06 54.3 53 54.7
Lj5g0006945 Lotus japonicus HOM05D000200 ORTHO05D001546 8.0e-06 54.3 53 56.6
Manes.04G064300 Manihot esculenta HOM05D000200 ORTHO05D001546 8.0e-06 54.3 53 54.7


User provided reference genes

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