Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 0.0e+00 2129.4 1063 100.0
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 0.0e+00 1965.3 1051 92.8
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 0.0e+00 1956.4 1051 93.1
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 0.0e+00 1946.4 1051 92.5
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1802.7 1060 84.7
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1802.3 1048 85.9
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1802.3 1066 84.6
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 0.0e+00 1797.3 1058 84.5
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1793.9 1058 84.4
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1774.6 1100 81.7
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 0.0e+00 1761.5 1074 82.3
arahy.Tifrunner.gnm1.ann1.GF075D Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1718.4 1107 79.2
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 0.0e+00 1622.1 1070 75.6
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 0.0e+00 1621.7 1069 75.8
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 0.0e+00 1614.4 1080 74.2
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 0.0e+00 1612.8 1076 75.7
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 0.0e+00 1602.4 1059 74.7
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 0.0e+00 1598.2 1099 73.6
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 0.0e+00 1590.9 1086 73.8
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 0.0e+00 1590.1 1079 74.4
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 0.0e+00 1587.8 1080 73.0
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 0.0e+00 1583.9 1090 73.1
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 0.0e+00 1580.5 1090 73.4
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1577.0 1068 73.1
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 0.0e+00 1570.4 1078 72.6
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 0.0e+00 1570.1 1056 73.3
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 0.0e+00 1565.1 1079 72.7
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 0.0e+00 1554.7 1050 73.5
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 0.0e+00 1553.5 1088 71.5
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1551.2 1056 73.4
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1550.8 1050 73.4
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1548.1 1064 72.8
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 0.0e+00 1548.1 1084 71.7
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 0.0e+00 1545.4 1081 70.7
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 0.0e+00 1540.4 1083 71.8
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1540.0 1059 72.2
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 0.0e+00 1538.1 1072 71.3
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 0.0e+00 1533.5 1079 70.3
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 0.0e+00 1533.5 1084 70.7
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1533.1 1067 72.3
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1529.2 944 81.6
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 0.0e+00 1528.8 1079 70.3
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 0.0e+00 1525.4 1080 70.7
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 0.0e+00 1522.3 1080 70.8
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1518.1 1076 70.8
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1516.5 1071 71.6
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 0.0e+00 1516.1 1083 70.1
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 0.0e+00 1515.7 1082 70.1
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1514.2 1077 70.7
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 0.0e+00 1513.0 1074 70.4
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 0.0e+00 1511.1 1063 71.1
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1510.7 1071 71.3
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1508.8 1071 71.3
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 0.0e+00 1508.0 1070 70.8
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1506.1 1074 70.8
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 0.0e+00 1503.4 1082 69.9
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 0.0e+00 1503.4 1079 69.2
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 0.0e+00 1503.0 1082 69.2
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 0.0e+00 1501.1 1063 70.6
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 0.0e+00 1500.3 1075 70.7
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 0.0e+00 1499.2 1079 69.4
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 0.0e+00 1499.2 1063 70.8
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1499.2 1047 71.8
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 0.0e+00 1499.2 1081 69.5
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 0.0e+00 1495.3 1062 69.8
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 0.0e+00 1494.6 1070 69.8
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1493.8 1078 69.5
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1491.1 1078 69.2
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 0.0e+00 1488.8 1063 70.6
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 0.0e+00 1487.6 1069 70.3
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 0.0e+00 1482.2 1085 69.8
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 0.0e+00 1472.2 1068 68.6
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 0.0e+00 1469.9 1078 69.3
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 0.0e+00 1468.4 1068 68.1
MELO3C006005.2 Cucumis melo HOM05D006425 ORTHO05D007312 0.0e+00 1456.0 1079 68.9
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 0.0e+00 1447.2 1075 68.4
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 0.0e+00 1437.6 1083 68.2
Peaxi162Scf00345g00024 Petunia axillaris HOM05D006425 ORTHO05D007312 0.0e+00 1427.5 1063 68.5
ClCG05G000660 Citrullus lanatus HOM05D006425 ORTHO05D007312 0.0e+00 1426.0 1074 68.5
SGA_v2.0_scaffold22G09958 Striga asiatica HOM05D006425 ORTHO05D007312 0.0e+00 1425.6 1078 66.3
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1411.7 1064 67.9
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 0.0e+00 1405.2 942 74.0
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 0.0e+00 1402.1 1213 62.0
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 0.0e+00 1385.5 1085 64.3
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 0.0e+00 1383.2 1085 63.5
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 0.0e+00 1372.8 1139 62.9
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 0.0e+00 1371.7 945 71.9
Lsat_1_v5_gn_7_2761 Lactuca sativa HOM05D006425 ORTHO05D007312 0.0e+00 1359.4 1080 65.0
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 0.0e+00 1356.3 1084 64.0
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 0.0e+00 1335.5 1075 62.5
SHI13064 Sapria himalayana HOM05D006425 ORTHO05D007312 0.0e+00 1240.7 1203 54.6
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 0.0e+00 1196.4 1067 58.1
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 0.0e+00 1189.9 760 77.2
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 0.0e+00 1175.6 757 76.4
Nitab4.5_0000307g0050 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1139.4 956 63.0
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1113.2 1063 57.5
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1104.0 756 73.0
Gohir.A12G113700 Gossypium hirsutum HOM05D006425 ORTHO05D007312 9.4e-302 1040.4 720 72.5
Mapoly0065s0064 Marchantia polymorpha HOM05D006425 ORTHO05D007312 8.5e-295 1017.3 1060 50.4
Pp3c27_4880 Physcomitrium patens HOM05D006425 ORTHO05D007312 1.1e-273 947.2 1069 48.5
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 5.4e-257 891.7 1018 51.9
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 8.7e-239 831.2 602 68.8
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.1e-238 830.9 752 56.6
AagrBONN_evm.TU.Sc2ySwM_368.2372 Anthoceros agrestis HOM05D006425 ORTHO05D007312 2.8e-237 826.2 997 46.3
BcaC07g42431 Brassica carinata HOM05D006425 ORTHO05D007312 1.4e-225 787.3 541 73.0
Sed0002059 Sechium edule HOM05D006425 ORTHO05D007312 1.5e-198 697.6 659 57.4
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 5.7e-198 695.7 501 68.5
CBR_g42133 Chara braunii HOM05D006425 ORTHO05D007312 3.8e-186 656.4 1509 31.3
Sopen01g039890 Solanum pennellii HOM05D006425 ORTHO05D007312 2.7e-163 580.5 401 73.3
Gohir.A12G113750 Gossypium hirsutum HOM05D006425 ORTHO05D007312 2.6e-126 457.6 314 72.0
Hma1.2p1_0180F.1_g079620 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 8.2e-80 303.1 194 75.8
MD01G1085000 Malus domestica HOM05D006425 ORTHO05D007312 8.8e-58 229.9 164 68.3
Hma1.2p1_0180F.1_g079630 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 2.3e-34 152.1 95 78.9
SEGI_38786 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 2.7e-22 112.1 59 81.4
VMungo0720G2246 Vigna mungo HOM05D006425 ORTHO05D007312 1.8e-18 99.4 96 55.2
Actinidia20216 Actinidia chinensis HOM05D006425 ORTHO05D007312 4.4e-17 94.7 54 75.9
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.5e-12 79.0 49 69.4
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.5e-12 79.0 49 69.4
MCO11G284 Micromonas commoda HOM05D006425 ORTHO05D007312 1.6e-11 76.3 110 40.0
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 4.7e-11 74.7 76 50.0
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 1.1e-10 73.6 76 48.7
SEGI_36326 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.4e-10 73.2 136 34.6
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 6.9e-10 70.9 40 77.5
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 2.7e-06 58.9 272 24.3
GSVIVG01037616001 Vitis vinifera HOM05D006425 ORTHO05D007312 3.5e-06 58.5 31 80.6


User provided reference genes

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