Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4732 Trifolium pratense HOM05D007943 ORTHO05D010047 1.3e-54 216.1 104 100.0
Phvul.006G116500 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 1.1e-24 116.7 107 52.3
Glyma.16G020300 Glycine max HOM05D007943 ORTHO05D010047 1.0e-22 110.2 114 51.8
Glyma.19G259000 Glycine max HOM05D007943 ORTHO05D010047 1.7e-22 109.4 94 58.5
Glyma.07G051200 Glycine max HOM05D007943 ORTHO05D010047 2.9e-22 108.6 115 52.2
TPR.G25267 Trifolium pratense HOM05D007943 ORTHO05D010047 2.7e-20 102.1 88 56.8
Medtr8g024630 Medicago truncatula HOM05D007943 ORTHO05D010047 6.1e-20 100.9 93 52.7
arahy.Tifrunner.gnm1.ann1.FJCJ23 Arachis hypogaea HOM05D007943 ORTHO05D010047 2.3e-19 99.0 87 54.0
Glyma.03G260100 Glycine max HOM05D007943 ORTHO05D010047 6.7e-19 97.4 91 53.8
Lalb_Chr10g0100821 Lupinus albus HOM05D007943 ORTHO05D010047 1.9e-18 95.9 88 55.7
Psat4g217240 Pisum sativum HOM05D007943 ORTHO05D010047 4.3e-18 94.7 89 52.8
Lalb_Chr02g0157681 Lupinus albus HOM05D007943 ORTHO05D010047 2.2e-17 92.4 92 52.2
Duzib133G1419 Durio zibethinus HOM05D007943 ORTHO05D010047 2.0e-15 85.9 97 41.2
Lj3g0013373 Lotus japonicus HOM05D007943 ORTHO05D010047 2.0e-15 85.9 110 42.7
Phvul.010G118200 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 7.7e-15 84.0 75 49.3
GSVIVG01027420001 Vitis vinifera HOM05D007943 ORTHO05D010047 7.7e-15 84.0 105 46.7
Prupe.2G195800 Prunus persica HOM05D007943 ORTHO05D010047 5.0e-14 81.3 90 45.6
CSS0046577 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 8.5e-14 80.5 109 38.5
QL08p046777 Quercus lobata HOM05D007943 ORTHO05D010047 4.2e-13 78.2 92 42.4
Haze_15717 Corylus avellana HOM05D007943 ORTHO05D010047 5.5e-13 77.8 79 46.8
MD07G1157400 Malus domestica HOM05D007943 ORTHO05D010047 7.2e-13 77.4 84 44.0
CiPaw.01G081100 Carya illinoinensis HOM05D007943 ORTHO05D010047 9.4e-13 77.0 89 42.7
FAN03G2903 Fragaria x ananassa HOM05D007943 ORTHO05D010047 1.6e-12 76.3 70 51.4
Gohir.D07G139100 Gossypium hirsutum HOM05D007943 ORTHO05D010047 2.1e-12 75.9 96 40.6
Gorai.001G151200 Gossypium raimondii HOM05D007943 ORTHO05D010047 2.1e-12 75.9 96 40.6
Cfa003750 Carpinus fangiana HOM05D007943 ORTHO05D010047 2.7e-12 75.5 85 44.7
Gohir.A07G134500 Gossypium hirsutum HOM05D007943 ORTHO05D010047 4.6e-12 74.7 99 39.4
MD01G1087200 Malus domestica HOM05D007943 ORTHO05D010047 4.6e-12 74.7 55 60.0
FvH4_7g17420 Fragaria vesca HOM05D007943 ORTHO05D010047 6.1e-12 74.3 70 50.0
FAN06G1823 Fragaria x ananassa HOM05D007943 ORTHO05D010047 6.1e-12 74.3 70 50.0
FAN10G1708 Fragaria x ananassa HOM05D007943 ORTHO05D010047 7.9e-12 73.9 70 50.0
Potri.014G104100 Populus trichocarpa HOM05D007943 ORTHO05D010047 7.9e-12 73.9 70 47.1
RcHm_v2.0_Chr1g0360861 Rosa chinensis HOM05D007943 ORTHO05D010047 7.9e-12 73.9 70 50.0
FAN01G2944 Fragaria x ananassa HOM05D007943 ORTHO05D010047 1.4e-11 73.2 58 55.2
Thecc.01G335100 Theobroma cacao HOM05D007943 ORTHO05D010047 1.4e-11 73.2 71 46.5
Hund16743 Selenicereus undatus HOM05D007943 ORTHO05D010047 2.3e-11 72.4 101 41.6
FAN10G0207 Fragaria x ananassa HOM05D007943 ORTHO05D010047 3.0e-11 72.0 70 48.6
Gohir.A11G100000 Gossypium hirsutum HOM05D007943 ORTHO05D010047 8.8e-11 70.5 95 38.9
Ciclev10022962m.g Citrus clementina HOM05D007943 ORTHO05D010047 1.1e-10 70.1 83 42.2
Gohir.D11G104700 Gossypium hirsutum HOM05D007943 ORTHO05D010047 1.5e-10 69.7 81 43.2
Gorai.007G112000 Gossypium raimondii HOM05D007943 ORTHO05D010047 1.5e-10 69.7 81 43.2
MELO3C005988.2 Cucumis melo HOM05D007943 ORTHO05D010047 2.0e-10 69.3 80 40.0
Carub.0001s0107 Capsella rubella HOM05D007943 ORTHO05D010047 2.5e-10 68.9 67 44.8
CsaV3_3G007690 Cucumis sativus L. HOM05D007943 ORTHO05D010047 2.5e-10 68.9 80 40.0
TAR629G3284 Trochodendron aralioides HOM05D007943 ORTHO05D010047 2.5e-10 68.9 80 46.2
AUR62004549 Chenopodium quinoa HOM05D007943 ORTHO05D010047 3.3e-10 68.6 91 42.9
COL.COLO4_06217 Corchorus olitorius HOM05D007943 ORTHO05D010047 5.7e-10 67.8 77 45.5
Oeu042966.1 Olea europaea HOM05D007943 ORTHO05D010047 5.7e-10 67.8 77 39.0
Atru.chr5.749 Acer truncatum HOM05D007943 ORTHO05D010047 7.4e-10 67.4 87 39.1
Nn3g18838 Nelumbo nucifera HOM05D007943 ORTHO05D010047 7.4e-10 67.4 81 44.4
AL1G11360 Arabidopsis lyrata HOM05D007943 ORTHO05D010047 9.7e-10 67.0 83 39.8
CSS0001750 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 9.7e-10 67.0 80 40.0
BolC8t52866H Brassica oleracea HOM05D007943 ORTHO05D010047 4.8e-09 64.7 91 36.3
Manes.01G241300 Manihot esculenta HOM05D007943 ORTHO05D010047 6.3e-09 64.3 78 42.3
Sc23g0001870 Simmondsia chinensis HOM05D007943 ORTHO05D010047 6.3e-09 64.3 85 44.7
A09p68930 Brassica napus HOM05D007943 ORTHO05D010047 1.1e-08 63.5 91 37.4
Manes.05G017800 Manihot esculenta HOM05D007943 ORTHO05D010047 1.8e-08 62.8 56 48.2
Sabra02G0135900 Salix brachista HOM05D007943 ORTHO05D010047 2.4e-08 62.4 97 37.1
Potri.002G177700 Populus trichocarpa HOM05D007943 ORTHO05D010047 4.1e-08 61.6 89 34.8
Sed0006019 Sechium edule HOM05D007943 ORTHO05D010047 1.5e-07 59.7 82 34.1
Rhsim01G0178600 Rhododendron simsii HOM05D007943 ORTHO05D010047 2.0e-07 59.3 89 41.6
Aqoxy7G00012 Aquilegia oxysepala HOM05D007943 ORTHO05D010047 1.0e-06 57.0 70 42.9
Solyc10g009260.1 Solanum lycopersicum HOM05D007943 ORTHO05D010047 1.0e-06 57.0 41 51.2
DCAR_006654 Daucus carota HOM05D007943 ORTHO05D010047 1.3e-06 56.6 55 43.6
HPP92_015077 Vanilla planifolia HOM05D000968 ORTHO05D001687 1.3e-06 56.6 49 46.9
TAR375G0647 Trochodendron aralioides HOM05D007943 ORTHO05D010047 1.7e-06 56.2 54 51.9
ClCG05G000500 Citrullus lanatus HOM05D007943 ORTHO05D010047 2.9e-06 55.5 49 44.9
Sed0008180 Sechium edule HOM05D007943 ORTHO05D010047 8.5e-06 53.9 64 35.9


User provided reference genes

Program Settings