Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4714 Trifolium pratense HOM05D009500 ORTHO05D000368 8.7e-125 450.3 222 100.0
TPR.G6938 Trifolium pratense HOM05D009500 ORTHO05D000368 6.7e-77 291.2 223 70.9
TPR.G4800 Trifolium pratense HOM05D009500 ORTHO05D000368 2.0e-76 289.7 232 65.5
TPR.G9274 Trifolium pratense HOM05D009500 ORTHO05D000368 3.1e-74 282.3 225 67.1
TPR.G11377 Trifolium pratense HOM05D009500 ORTHO05D000368 8.5e-72 274.2 223 68.2
TPR.G6942 Trifolium pratense HOM05D009500 ORTHO05D000368 5.9e-65 251.5 224 62.5
TPR.G4783 Trifolium pratense HOM05D009500 ORTHO05D000368 1.3e-64 250.4 232 59.5
Ca_09502_v3 Cicer arietinum L. HOM05D009500 ORTHO05D000368 3.8e-64 248.8 224 61.2
Medtr7g116580 Medicago truncatula HOM05D009500 ORTHO05D000368 4.2e-63 245.4 231 59.3
TPR.G7001 Trifolium pratense HOM05D009500 ORTHO05D000368 4.0e-61 238.8 224 61.6
Medtr7g114090 Medicago truncatula HOM05D009500 ORTHO05D000368 9.8e-60 234.2 223 56.1
Medtr1g111630 Medicago truncatula HOM05D009500 ORTHO05D000368 2.7e-57 226.1 222 54.5
Psat3g004120 Pisum sativum HOM05D009500 ORTHO05D000368 5.9e-57 224.9 221 55.7
TPR.G4702 Trifolium pratense HOM05D009500 ORTHO05D000368 3.8e-56 222.2 228 54.8
TPR.G4771 Trifolium pratense HOM05D009500 ORTHO05D000368 1.4e-42 177.2 190 55.3
TPR.G36952 Trifolium pratense HOM05D009500 ORTHO05D000368 1.3e-32 144.1 102 61.8
Medtr7g116260 Medicago truncatula HOM05D009500 ORTHO05D000368 5.6e-31 138.7 115 62.6
Medtr7g117735 Medicago truncatula HOM05D009500 ORTHO05D000368 1.2e-30 137.5 90 68.9
Psat3g003680 Pisum sativum HOM05D009500 ORTHO05D000368 3.6e-30 136.0 155 52.3
TPR.G18155 Trifolium pratense HOM05D009500 ORTHO05D000368 5.2e-29 132.1 97 63.9
TPR.G4705 Trifolium pratense HOM05D008175 ORTHO05D000368 6.9e-21 105.1 120 50.8
TPR.G6989 Trifolium pratense HOM05D009500 ORTHO05D000368 6.4e-19 98.6 64 76.6
Potri.017G092301 Populus trichocarpa HOM05D008175 ORTHO05D000368 2.8e-14 83.2 196 30.1
TPR.G7278 Trifolium pratense HOM05D009500 ORTHO05D000368 4.8e-14 82.4 43 83.7
Sabra17G0081300 Salix brachista HOM05D000576 ORTHO05D000368 8.1e-14 81.6 189 30.2
Ca_09527_v3 Cicer arietinum L. HOM05D009500 ORTHO05D000368 6.9e-13 78.6 85 52.9
FAN14G2376 Fragaria x ananassa HOM05D000576 ORTHO05D000368 6.9e-13 78.6 190 30.0
RcHm_v2.0_Chr2g0167641 Rosa chinensis HOM05D000576 ORTHO05D000368 6.9e-13 78.6 131 33.6
CSS0031751 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 2.6e-12 76.6 162 32.7
RcHm_v2.0_Chr3g0476161 Rosa chinensis HOM05D000576 ORTHO05D000368 9.9e-12 74.7 139 34.5
FAN23G0158 Fragaria x ananassa HOM05D029661 ORTHO05D029371 1.3e-11 74.3 127 36.2
FvH4_6g48330 Fragaria vesca HOM05D008847 ORTHO05D000368 3.8e-11 72.8 137 30.7
FAN09G3608 Fragaria x ananassa HOM05D000576 ORTHO05D000368 3.8e-11 72.8 242 26.9
FvH4_6g47821 Fragaria vesca HOM05D000576 ORTHO05D000368 4.9e-11 72.4 214 27.1
Ca_26228_v3 Cicer arietinum L. HOM05D008175 ORTHO05D010403 1.2e-09 67.8 165 33.9
FAN14G3739 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.1e-09 67.0 214 27.1
RcHm_v2.0_Chr5g0047501 Rosa chinensis HOM05D008847 ORTHO05D000368 4.6e-09 65.9 236 26.3
Medtr2g064400 Medicago truncatula HOM05D008175 ORTHO05D010403 6.0e-09 65.5 158 31.0
RcHm_v2.0_Chr2g0167551 Rosa chinensis HOM05D000576 ORTHO05D000368 1.8e-08 63.9 129 33.3
RcHm_v2.0_Chr2g0167601 Rosa chinensis HOM05D000576 ORTHO05D000368 2.3e-08 63.5 131 32.1
RcHm_v2.0_Chr5g0008761 Rosa chinensis HOM05D008847 ORTHO05D045484 3.0e-08 63.2 213 26.8
FvH4_6g48431 Fragaria vesca HOM05D008847 ORTHO05D000368 5.1e-08 62.4 135 29.6
FAN14G4345 Fragaria x ananassa HOM05D008847 ORTHO05D000368 5.1e-08 62.4 135 29.6
Ca_25084_v3 Cicer arietinum L. HOM05D009500 ORTHO05D010403 8.7e-08 61.6 66 56.1
FAN02G4373 Fragaria x ananassa HOM05D008847 ORTHO05D000368 8.7e-08 61.6 169 27.8
FAN05G3417 Fragaria x ananassa HOM05D008847 ORTHO05D000368 8.7e-08 61.6 128 32.0
Prupe.3G259800 Prunus persica HOM05D000576 ORTHO05D000368 8.7e-08 61.6 241 24.5
FAN09G4808 Fragaria x ananassa HOM05D008847 ORTHO05D000368 1.9e-07 60.5 130 31.5
FAN02G1311 Fragaria x ananassa HOM05D008847 ORTHO05D000368 3.3e-07 59.7 81 37.0
FAN14G0812 Fragaria x ananassa HOM05D000576 ORTHO05D000368 5.6e-07 58.9 105 33.3
Medtr7g105980 Medicago truncatula HOM05D008175 ORTHO05D010403 5.6e-07 58.9 192 30.2
RcHm_v2.0_Chr2g0168251 Rosa chinensis HOM05D000576 ORTHO05D000368 5.6e-07 58.9 169 24.3
FAN05G2407 Fragaria x ananassa HOM05D000576 ORTHO05D000368 7.4e-07 58.5 147 30.6
FAN06G2118 Fragaria x ananassa HOM05D008847 ORTHO05D016304 2.8e-06 56.6 185 29.2
FAN06G2289 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.8e-06 56.6 142 31.0
FAN06G0982 Fragaria x ananassa HOM05D000576 ORTHO05D000368 4.8e-06 55.8 142 30.3
FAN15G1135 Fragaria x ananassa HOM05D008847 ORTHO05D000368 6.2e-06 55.5 75 34.7
FAN03G0578 Fragaria x ananassa HOM05D008847 ORTHO05D000368 8.1e-06 55.1 142 30.3


User provided reference genes

Program Settings