Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4707 Trifolium pratense HOM05D005178 ORTHO05D006123 4.6e-111 404.8 242 100.0
Medtr7g116930 Medicago truncatula HOM05D005178 ORTHO05D006123 5.1e-70 268.5 238 71.4
Ca_09491_v3 Cicer arietinum L. HOM05D005178 ORTHO05D006123 3.2e-64 249.2 238 66.0
Lj1g0025938 Lotus japonicus HOM05D005178 ORTHO05D006123 4.1e-59 232.3 237 58.6
Glyma.19G252900 Glycine max HOM05D005178 ORTHO05D006123 2.9e-49 199.5 169 59.8
Glyma.03G255300 Glycine max HOM05D005178 ORTHO05D006123 3.8e-49 199.1 169 59.2
Psat3g003480 Pisum sativum HOM05D005178 ORTHO05D006123 3.7e-44 182.6 129 68.2
VMungo0540G0638 Vigna mungo HOM05D005178 ORTHO05D006123 8.2e-44 181.4 173 52.0
Phvul.006G110000 Phaseolus vulgaris HOM05D005178 ORTHO05D006123 9.1e-43 177.9 250 46.8
Lalb_Chr04g0261721 Lupinus albus HOM05D005178 ORTHO05D006123 9.7e-37 157.9 173 45.7
Gohir.D08G147400 Gossypium hirsutum HOM05D005178 ORTHO05D006123 6.7e-30 135.2 239 40.2
Gohir.D11G099200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 6.7e-30 135.2 239 42.3
Gorai.004G153000 Gossypium raimondii HOM05D005178 ORTHO05D006123 8.8e-30 134.8 239 39.7
CANSAT56G4005 Cannabis sativa HOM05D005178 ORTHO05D006123 2.6e-29 133.3 237 42.2
Gohir.A11G094200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 3.3e-29 132.9 239 41.4
Gorai.007G105400 Gossypium raimondii HOM05D005178 ORTHO05D006123 5.7e-29 132.1 239 41.8
Nn7g37376 Nelumbo nucifera HOM05D005178 ORTHO05D006123 5.7e-29 132.1 238 35.3
Thecc.01G348100 Theobroma cacao HOM05D005178 ORTHO05D006123 7.5e-29 131.7 239 44.8
CiPaw.01G071600 Carya illinoinensis HOM05D005178 ORTHO05D006123 1.3e-28 131.0 240 47.5
Duzib138G0021 Durio zibethinus HOM05D005178 ORTHO05D006123 1.3e-28 131.0 239 46.0
Duzib133G0451 Durio zibethinus HOM05D005178 ORTHO05D006123 1.7e-28 130.6 242 45.0
Haze_15614 Corylus avellana HOM05D005178 ORTHO05D006123 3.7e-28 129.4 239 42.7
PGR042G2135 Punica granatum HOM05D005178 ORTHO05D006123 8.2e-28 128.3 247 44.9
QL04p059571 Quercus lobata HOM05D005178 ORTHO05D006123 1.4e-27 127.5 248 45.2
Gohir.A08G126100 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.8e-27 127.1 239 36.8
Gohir.D12G113800 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.4e-27 126.7 240 32.9
Gorai.008G123300 Gossypium raimondii HOM05D005178 ORTHO05D006123 3.5e-26 122.9 240 32.5
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 4.5e-26 122.5 240 42.1
Potri.014G094400 Populus trichocarpa HOM05D005178 ORTHO05D006123 5.9e-26 122.1 241 35.7
Sabra02G0144400 Salix brachista HOM05D005178 ORTHO05D006123 7.7e-26 121.7 243 37.0
Hma1.2p1_2972F.1_g331100 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 1.3e-25 120.9 238 40.8
Lj7A504T56 Lonicera japonica HOM05D005178 ORTHO05D006123 5.0e-25 119.0 231 45.9
Dinv43890 Davidia involucrata HOM05D005178 ORTHO05D006123 8.5e-25 118.2 240 42.1
Potri.002G167300 Populus trichocarpa HOM05D005178 ORTHO05D006123 1.1e-24 117.9 242 39.3
Nn1g01788 Nelumbo nucifera HOM05D005178 ORTHO05D006123 2.5e-24 116.7 237 32.5
Hma1.2p1_0384F.1_g141000 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 4.2e-24 115.9 238 42.0
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 2.7e-23 113.2 240 38.3
Prupe.2G183000 Prunus persica HOM05D005178 ORTHO05D006123 8.0e-23 111.7 177 34.5
CsaV3_3G008390 Cucumis sativus L. HOM05D000050 ORTHO05D000380 1.8e-22 110.5 240 39.2
Ciclev10021837m.g Citrus clementina HOM05D005178 ORTHO05D006123 2.3e-22 110.2 238 42.9
PSO384G3117 Papaver somniferum HOM05D005178 ORTHO05D006123 6.8e-22 108.6 175 37.1
RcHm_v2.0_Chr1g0358651 Rosa chinensis HOM05D005178 ORTHO05D006123 1.2e-21 107.8 244 35.2
ClCG08G003840 Citrullus lanatus HOM05D005178 ORTHO05D006123 2.0e-21 107.1 245 38.4
Manes.05G026400 Manihot esculenta HOM05D005178 ORTHO05D006123 4.4e-21 105.9 241 29.5
MD01G1075000 Malus domestica HOM05D005178 ORTHO05D006123 5.7e-21 105.5 178 34.3
PSO135G0875 Papaver somniferum HOM05D005178 ORTHO05D006123 5.7e-21 105.5 175 36.6
Peaxi162Scf00403g00074 Petunia axillaris HOM05D005178 ORTHO05D006123 5.7e-21 105.5 241 36.1
MELO3C006056.2 Cucumis melo HOM05D005178 ORTHO05D006123 1.3e-20 104.4 238 38.7
MELO3C029922.2 Cucumis melo HOM05D005178 ORTHO05D006123 1.3e-20 104.4 173 35.8
FAN03G0560 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.7e-20 104.0 243 32.1
Thhalv10001596m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 2.2e-20 103.6 248 35.1
CiPaw.02G038200 Carya illinoinensis HOM05D005178 ORTHO05D006123 2.8e-20 103.2 237 38.0
Nitab4.5_0005619g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 6.3e-20 102.1 238 30.3
A03p25540 Brassica napus HOM05D005178 ORTHO05D006123 1.1e-19 101.3 176 35.8
BraA03t11771Z Brassica rapa HOM05D005178 ORTHO05D006123 1.1e-19 101.3 176 35.8
FAN10G2759 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.1e-19 101.3 243 31.7
CsaV3_6G003970 Cucumis sativus L. HOM05D005178 ORTHO05D006123 1.4e-19 100.9 173 35.3
SHI13195 Sapria himalayana HOM05D005178 ORTHO05D006123 1.4e-19 100.9 232 41.4
Sopen10g005540 Solanum pennellii HOM05D005178 ORTHO05D006123 1.4e-19 100.9 239 36.8
FvH4_7g15840 Fragaria vesca HOM05D005178 ORTHO05D006123 1.8e-19 100.5 243 30.9
Solyc10g011750.3 Solanum lycopersicum HOM05D005178 ORTHO05D006123 1.8e-19 100.5 239 36.8
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 2.4e-19 100.1 247 30.4
CSS0038689 Camellia sinensis var. sinensis HOM05D005178 ORTHO05D006123 2.4e-19 100.1 239 38.9
FAN06G0749 Fragaria x ananassa HOM05D005178 ORTHO05D006123 2.4e-19 100.1 243 30.9
Nitab4.5_0002262g0140 Nicotiana tabacum HOM05D005178 ORTHO05D006123 2.4e-19 100.1 242 39.7
Sc01g0002990 Simmondsia chinensis HOM05D005178 ORTHO05D006123 2.4e-19 100.1 244 38.9
BcaB01g03231 Brassica carinata HOM05D005178 ORTHO05D006123 3.1e-19 99.8 175 34.3
BcaC01g05085 Brassica carinata HOM05D005178 ORTHO05D006123 3.1e-19 99.8 175 34.3
Nitab4.5_0003779g0030 Nicotiana tabacum HOM05D005178 ORTHO05D006123 3.1e-19 99.8 238 37.8
MBI06_g02230_MAGBIO Magnolia biondii HOM05D005178 ORTHO05D006123 4.1e-19 99.4 238 37.8
Sabra14G0069000 Salix brachista HOM05D005178 ORTHO05D006123 5.4e-19 99.0 149 37.6
C03p30470 Brassica napus HOM05D005178 ORTHO05D006123 9.1e-19 98.2 245 34.7
BolC3t15395H Brassica oleracea HOM05D005178 ORTHO05D006123 9.1e-19 98.2 245 34.7
MD07G1144100 Malus domestica HOM05D005178 ORTHO05D006123 9.1e-19 98.2 243 35.4
Sed0008780 Sechium edule HOM05D005178 ORTHO05D006123 9.1e-19 98.2 232 39.7
AL4G45600 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 1.2e-18 97.8 245 33.1
Rhsim07G0007300 Rhododendron simsii HOM05D005178 ORTHO05D006123 1.2e-18 97.8 237 34.6
Actinidia10100 Actinidia chinensis HOM05D005178 ORTHO05D006123 2.0e-18 97.1 237 40.1
Sp4g28340 Schrenkiella parvula HOM05D005178 ORTHO05D006123 2.0e-18 97.1 176 33.0
A05p01500 Brassica napus HOM05D005178 ORTHO05D006123 2.7e-18 96.7 253 35.2
BraA05t19146Z Brassica rapa HOM05D005178 ORTHO05D006123 2.7e-18 96.7 253 35.2
FAN10G1950 Fragaria x ananassa HOM05D005178 ORTHO05D006123 2.7e-18 96.7 242 31.0
FAN06G4203 Fragaria x ananassa HOM05D005178 ORTHO05D006123 4.5e-18 95.9 242 30.6
C04p01700 Brassica napus HOM05D005178 ORTHO05D006123 7.7e-18 95.1 253 35.2
BolC4t21822H Brassica oleracea HOM05D005178 ORTHO05D006123 7.7e-18 95.1 253 35.2
BcaC02g12521 Brassica carinata HOM05D005178 ORTHO05D006123 1.0e-17 94.7 252 34.9
BcaC01g06846 Brassica carinata HOM05D005178 ORTHO05D006123 1.3e-17 94.4 242 33.1
Carub.0004s2900 Capsella rubella HOM05D005178 ORTHO05D006123 1.7e-17 94.0 246 37.4
BcaC01g05079 Brassica carinata HOM05D005178 ORTHO05D006123 5.0e-17 92.4 247 34.8
CAN.G1651.2 Capsicum annuum HOM05D005178 ORTHO05D006123 8.5e-17 91.7 239 36.0
PGSC0003DMG400019400 Solanum tuberosum HOM05D005178 ORTHO05D006123 1.5e-16 90.9 240 36.2
CARHR141580 Cardamine hirsuta HOM05D005178 ORTHO05D006123 1.9e-16 90.5 176 31.2
AT2G46300 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 2.5e-16 90.1 245 32.2
TWI14G0215 Tripterygium wilfordii HOM05D005178 ORTHO05D006123 5.5e-16 89.0 142 35.9
BcaB01g02336 Brassica carinata HOM05D005178 ORTHO05D006123 7.2e-16 88.6 242 31.8
C05p00550 Brassica napus HOM05D005178 ORTHO05D006123 3.6e-15 86.3 246 34.1
AL1G10980 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 4.7e-15 85.9 180 32.2
THA.LOC104802056 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 6.1e-15 85.5 244 37.3
Oeu008679.1 Olea europaea HOM05D005178 ORTHO05D006123 8.0e-15 85.1 168 32.1
Aqoxy7G00174 Aquilegia oxysepala HOM05D005178 ORTHO05D006123 1.0e-14 84.7 175 32.6
Aa31LG1G10830 Aethionema arabicum HOM05D005178 ORTHO05D006123 1.4e-14 84.3 242 40.1
C03p38880 Brassica napus HOM05D005178 ORTHO05D006123 1.4e-14 84.3 242 29.8
A03p31890 Brassica napus HOM05D005178 ORTHO05D006123 1.8e-14 84.0 242 31.4
BraA10t42331Z Brassica rapa HOM05D005178 ORTHO05D006123 2.3e-14 83.6 246 34.1
BraA02t07418Z Brassica rapa HOM05D005178 ORTHO05D006123 4.0e-14 82.8 247 32.8
BcaB03g13583 Brassica carinata HOM05D005178 ORTHO05D006123 6.8e-14 82.0 246 33.7
A02p24280 Brassica napus HOM05D005178 ORTHO05D006123 6.8e-14 82.0 175 33.1
A10p00520 Brassica napus HOM05D005178 ORTHO05D006123 6.8e-14 82.0 246 34.1
BolC5t28844H Brassica oleracea HOM05D005178 ORTHO05D006123 6.8e-14 82.0 246 33.7
BraA03t12361Z Brassica rapa HOM05D005178 ORTHO05D006123 1.5e-13 80.9 242 37.2
Sp1g00860 Schrenkiella parvula HOM05D005178 ORTHO05D006123 1.5e-13 80.9 242 33.1
AL6G52250 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 2.0e-13 80.5 246 32.5
Thhalv10009686m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 4.4e-13 79.3 246 33.3
Aa31LG5G850 Aethionema arabicum HOM05D005178 ORTHO05D006123 5.7e-13 79.0 248 26.6
BcaC03g16062 Brassica carinata HOM05D005178 ORTHO05D006123 9.8e-13 78.2 247 32.4
Sed0019896 Sechium edule HOM05D005178 ORTHO05D006123 9.8e-13 78.2 250 31.6
Carub.0001s0080 Capsella rubella HOM05D005178 ORTHO05D006123 1.3e-12 77.8 250 33.2
CARHR249180 Cardamine hirsuta HOM05D005178 ORTHO05D006123 1.7e-12 77.4 175 30.3
C02p38280 Brassica napus HOM05D005178 ORTHO05D006123 2.2e-12 77.0 247 31.6
BolC2t09843H Brassica oleracea HOM05D005178 ORTHO05D006123 2.8e-12 76.6 247 32.0
Sp6g01000 Schrenkiella parvula HOM05D005178 ORTHO05D006123 8.3e-12 75.1 246 32.1
AT4G01110 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 1.8e-11 73.9 248 31.0
TAR375G0073 Trochodendron aralioides HOM05D005178 ORTHO05D006123 7.0e-11 72.0 102 37.3
THA.LOC104825868 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 1.7e-09 67.4 249 33.7
Gohir.A12G110633 Gossypium hirsutum HOM05D005178 ORTHO05D006123 3.8e-09 66.2 139 30.2
MBI01_g16603_MAGBIO Magnolia biondii HOM05D002137 ORTHO05D002144 6.6e-09 65.5 155 25.8
Nitab4.5_0000522g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.9e-08 63.9 218 27.1
TAR626G1375 Trochodendron aralioides HOM05D002137 ORTHO05D002144 1.9e-08 63.9 155 25.8
Nn6g35491 Nelumbo nucifera HOM05D002137 ORTHO05D002144 3.3e-08 63.2 187 24.6
AUR62023503 Chenopodium quinoa HOM05D005178 ORTHO05D006123 7.3e-08 62.0 118 36.4
AUR62004447 Chenopodium quinoa HOM05D005178 ORTHO05D006123 2.1e-07 60.5 118 36.4
unitig_26.g8929 Utricularia gibba HOM05D002137 ORTHO05D002144 2.1e-07 60.5 155 27.7
MBI04_g31164_MAGBIO Magnolia biondii HOM05D002137 ORTHO05D002144 2.8e-07 60.1 149 25.5
TAR383G0516 Trochodendron aralioides HOM05D002137 ORTHO05D002144 2.8e-07 60.1 155 25.8
Nn8g38851 Nelumbo nucifera HOM05D002137 ORTHO05D002144 3.6e-07 59.7 155 25.8
BcaC02g08309 Brassica carinata HOM05D002137 ORTHO05D002144 6.1e-07 58.9 157 28.0
C04p55930 Brassica napus HOM05D002137 ORTHO05D002144 6.1e-07 58.9 157 28.0
BolC4t27126H Brassica oleracea HOM05D002137 ORTHO05D002144 6.1e-07 58.9 157 28.0
CSS0025872 Camellia sinensis var. sinensis HOM05D002137 ORTHO05D002144 6.1e-07 58.9 151 27.2
CSS0050252 Camellia sinensis var. sinensis HOM05D002137 ORTHO05D002144 6.1e-07 58.9 150 26.0
HanXRQChr10g0312971 Helianthus annuus HOM05D002137 ORTHO05D002144 8.0e-07 58.5 153 30.1
Aa31LG3G15310 Aethionema arabicum HOM05D002137 ORTHO05D002144 1.0e-06 58.2 154 27.3
MSTRG.4769 Avicennia marina HOM05D002137 ORTHO05D002144 1.4e-06 57.8 151 24.5
A04p20220 Brassica napus HOM05D002137 ORTHO05D002144 1.4e-06 57.8 152 27.0
BraA04t17601Z Brassica rapa HOM05D002137 ORTHO05D002144 1.8e-06 57.4 152 27.0
FAN27G0947 Fragaria x ananassa HOM05D002137 ORTHO05D002144 2.3e-06 57.0 157 28.0
Dinv37912 Davidia involucrata HOM05D002137 ORTHO05D002144 3.0e-06 56.6 154 26.0
Nn5g26812 Nelumbo nucifera HOM05D008517 ORTHO05D010482 3.0e-06 56.6 142 29.6
THA.LOC104804513 Tarenaya hassleriana HOM05D002137 ORTHO05D002144 3.0e-06 56.6 156 26.9
Cpa.g.sc2.275 Carica papaya HOM05D008517 ORTHO05D010482 4.0e-06 56.2 159 27.0
PSO210G7526 Papaver somniferum HOM05D002137 ORTHO05D002144 4.0e-06 56.2 159 26.4
BolC9t59324H Brassica oleracea HOM05D002137 ORTHO05D002144 5.2e-06 55.8 153 28.8
DCAR_018574 Daucus carota HOM05D000973 ORTHO05D000652 5.2e-06 55.8 179 25.7
AL6G22650 Arabidopsis lyrata HOM05D002137 ORTHO05D002144 6.8e-06 55.5 154 27.3
C09p64940 Brassica napus HOM05D002137 ORTHO05D002144 6.8e-06 55.5 153 28.1
Glyma.07G009700 Glycine max HOM05D002137 ORTHO05D002144 6.8e-06 55.5 156 26.9
PSO210G0246 Papaver somniferum HOM05D002137 ORTHO05D002144 6.8e-06 55.5 159 25.8
TWI34G1454 Tripterygium wilfordii HOM05D002137 ORTHO05D002144 6.8e-06 55.5 155 25.2
ATR0026G055 Amborella trichopoda HOM05D002137 ORTHO05D002144 8.9e-06 55.1 147 27.2


User provided reference genes

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