Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 0.0e+00 1484.2 740 100.0
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 0.0e+00 1339.7 738 90.2
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 0.0e+00 1272.3 774 82.4
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 0.0e+00 1257.7 741 85.3
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 0.0e+00 1224.2 740 82.7
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 0.0e+00 1218.4 743 82.5
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 0.0e+00 1167.1 741 79.2
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 0.0e+00 1158.7 744 79.6
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 2.2e-305 1052.0 741 73.1
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 1.8e-299 1032.3 666 77.3
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 2.0e-287 992.3 745 66.4
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 2.3e-286 988.8 745 66.2
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 6.6e-286 987.3 745 65.8
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 8.9e-283 976.9 745 65.2
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 3.4e-282 974.9 743 65.3
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 5.8e-282 974.2 743 66.2
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 3.5e-279 964.9 745 65.0
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 4.6e-279 964.5 745 64.8
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 7.8e-279 963.8 753 64.4
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 1.1e-277 959.9 745 64.7
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 4.3e-277 958.0 760 66.8
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 1.6e-276 956.1 743 64.5
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 8.9e-275 950.3 746 63.8
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 2.0e-274 949.1 743 63.8
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 3.4e-274 948.3 752 64.1
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 5.8e-274 947.6 745 63.4
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 2.4e-272 942.2 747 64.7
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 7.8e-271 937.2 746 62.9
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 1.1e-264 916.8 745 61.2
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 1.1e-264 916.8 734 65.9
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 4.1e-264 914.8 742 65.5
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 2.3e-262 909.1 759 61.1
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 2.3e-262 909.1 744 63.6
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 6.9e-259 897.5 753 62.0
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 7.1e-256 887.5 778 58.7
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 6.0e-255 884.4 752 61.2
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 1.0e-254 883.6 750 61.2
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 1.7e-254 882.9 752 61.7
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 3.0e-254 882.1 752 60.9
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 5.1e-254 881.3 781 58.3
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 5.1e-254 881.3 780 58.5
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 8.7e-254 880.6 660 66.4
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 8.7e-254 880.6 746 60.2
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 1.1e-251 873.6 769 59.3
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 1.8e-251 872.8 743 61.9
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 5.3e-251 871.3 750 60.9
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 9.0e-251 870.5 750 60.5
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 1.5e-250 869.8 743 61.6
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 1.3e-249 866.7 743 59.4
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 1.3e-249 866.7 743 59.4
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 2.9e-249 865.5 749 60.1
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 4.9e-249 864.8 768 60.2
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 6.4e-249 864.4 748 59.6
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 8.4e-249 864.0 830 55.8
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 7.1e-248 860.9 750 59.5
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 4.6e-247 858.2 744 59.8
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 6.0e-247 857.8 744 59.7
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 1.0e-246 857.1 748 58.7
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 1.8e-246 856.3 747 59.3
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 3.9e-246 855.1 747 58.5
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 3.3e-245 852.0 766 58.0
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 4.3e-245 851.7 749 59.7
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 7.4e-245 850.9 741 60.2
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 7.4e-245 850.9 746 58.4
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 7.4e-245 850.9 659 64.6
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 1.3e-244 850.1 747 58.1
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 3.7e-244 848.6 750 58.9
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 6.2e-244 847.8 746 59.1
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 6.2e-244 847.8 747 59.4
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 1.8e-243 846.3 751 57.3
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 5.3e-243 844.7 741 59.5
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 2.0e-242 842.8 606 69.6
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 4.9e-241 838.2 731 60.1
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 6.4e-241 837.8 746 58.0
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 1.9e-240 836.3 746 57.2
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 2.1e-239 832.8 747 58.8
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 2.1e-239 832.8 799 55.3
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 2.1e-239 832.8 770 56.9
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 7.9e-239 830.9 750 57.9
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 1.3e-238 830.1 677 62.3
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 8.7e-238 827.4 680 61.8
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 1.1e-237 827.0 753 58.3
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 8.2e-236 820.8 748 57.6
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 8.2e-236 820.8 748 57.6
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 8.2e-236 820.8 669 61.9
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 2.0e-234 816.2 672 61.5
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 2.0e-234 816.2 815 54.0
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 1.4e-232 810.1 771 55.5
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 4.1e-227 792.0 711 58.1
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 7.6e-226 787.7 745 55.3
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 3.8e-225 785.4 736 59.6
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 1.4e-224 783.5 764 55.1
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 3.2e-224 782.3 753 55.0
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 1.0e-217 760.8 740 55.1
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 5.0e-217 758.4 745 54.1
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 1.8e-214 750.0 753 53.9
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 6.3e-212 741.5 819 50.1
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 1.8e-211 740.0 676 58.6
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 2.2e-209 733.0 567 66.8
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 2.9e-209 732.6 748 53.5
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 6.1e-207 724.9 668 56.4
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 1.1e-203 714.1 738 51.5
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 8.2e-196 688.0 744 51.2
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 3.3e-184 649.4 922 42.7
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 3.0e-182 642.9 607 56.5
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 5.7e-181 638.6 622 55.0
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 2.3e-177 626.7 746 46.5
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 3.3e-168 596.3 792 44.9
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 7.8e-162 575.1 590 53.6
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 1.2e-159 567.8 646 50.5
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 3.1e-158 563.1 569 54.0
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 7.5e-157 558.5 594 52.2
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 1.0e-153 548.1 548 54.2
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 1.1e-152 544.7 610 50.7
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 1.6e-146 524.2 659 46.7
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 6.9e-142 508.8 524 50.2
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.6e-122 444.5 396 57.6
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 4.2e-107 393.3 380 54.2
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 3.0e-89 334.0 624 35.3
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 2.2e-84 317.8 350 51.1
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 5.9e-77 293.1 546 35.7
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 6.5e-76 289.7 691 30.5
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.4e-57 228.8 377 37.4
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 1.8e-49 201.8 192 60.9
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 3.4e-48 197.6 231 45.0
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 3.4e-48 197.6 231 45.0
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 7.8e-45 186.4 148 63.5
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 2.3e-44 184.9 238 40.8
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 3.9e-44 184.1 522 30.5
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 1.5e-40 172.2 156 56.4
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 3.1e-33 147.9 77 89.6
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 4.0e-33 147.5 77 89.6
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 8.9e-33 146.4 102 72.5
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 1.1e-30 139.4 77 83.1
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 4.9e-23 114.0 171 42.7
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 3.5e-21 107.8 56 91.1
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 1.5e-16 92.4 94 43.6
BcaC05g29940 Brassica carinata HOM05D005077 ORTHO05D018175 8.4e-15 86.7 192 36.5
EL10Ac5g11645 Beta vulgaris HOM05D005077 ORTHO05D006889 2.4e-14 85.1 50 74.0
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 1.1e-11 76.3 65 52.3
Atru.chr2.994 Acer truncatum HOM05D005077 ORTHO05D018175 3.7e-10 71.2 72 56.9
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 3.7e-10 71.2 82 50.0
Hund05190 Selenicereus undatus HOM05D005077 ORTHO05D006889 3.4e-08 64.7 49 61.2
Medtr7g086410 Medicago truncatula HOM05D005077 ORTHO05D260314 4.5e-08 64.3 50 68.0
CSS0021399 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 2.9e-07 61.6 66 48.5
CSS0037989 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 8.4e-07 60.1 66 48.5


User provided reference genes

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