Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4681 Trifolium pratense HOM05D003456 ORTHO05D004082 3.9e-54 214.5 109 100.0
Atru.chr8.1550 Acer truncatum HOM05D003456 ORTHO05D004082 7.5e-21 104.0 63 79.4
Cfa016601 Carpinus fangiana HOM05D003456 ORTHO05D004082 7.5e-21 104.0 63 79.4
Haze_19603 Corylus avellana HOM05D003456 ORTHO05D004082 7.5e-21 104.0 63 79.4
Prupe.7G111000 Prunus persica HOM05D003456 ORTHO05D004082 7.5e-21 104.0 63 79.4
Actinidia34723 Actinidia chinensis HOM05D003456 ORTHO05D004082 9.8e-21 103.6 63 77.8
ECA233G4183 Erigeron canadensis HOM05D003456 ORTHO05D004082 9.8e-21 103.6 63 77.8
HanXRQChr08g0217241 Helianthus annuus HOM05D003456 ORTHO05D004082 9.8e-21 103.6 63 77.8
HanXRQChr12g0368091 Helianthus annuus HOM05D003456 ORTHO05D004082 9.8e-21 103.6 63 77.8
Lalb_Chr25g0288351 Lupinus albus HOM05D003456 ORTHO05D004082 9.8e-21 103.6 63 77.8
RcHm_v2.0_Chr6g0270521 Rosa chinensis HOM05D003456 ORTHO05D004082 9.8e-21 103.6 62 80.6
TAR636G2922 Trochodendron aralioides HOM05D003456 ORTHO05D004082 9.8e-21 103.6 63 77.8
Sc09g0005350 Simmondsia chinensis HOM05D003456 ORTHO05D004082 1.3e-20 103.2 63 76.2
Cpa.g.sc56.14 Carica papaya HOM05D003456 ORTHO05D004082 1.7e-20 102.8 63 76.2
CiPaw.09G013300 Carya illinoinensis HOM05D003456 ORTHO05D004082 1.7e-20 102.8 63 77.8
CiPaw.13G039000 Carya illinoinensis HOM05D003456 ORTHO05D004082 1.7e-20 102.8 63 77.8
Ca_08885_v3 Cicer arietinum L. HOM05D003456 ORTHO05D004082 1.7e-20 102.8 62 80.6
Gohir.A04G063300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 1.7e-20 102.8 63 77.8
Gohir.D04G100300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 1.7e-20 102.8 63 77.8
Gorai.009G403300 Gossypium raimondii HOM05D003456 ORTHO05D004082 1.7e-20 102.8 63 77.8
Psat4g110960 Pisum sativum HOM05D003456 ORTHO05D004082 1.7e-20 102.8 62 80.6
Thecc.09G106900 Theobroma cacao HOM05D003456 ORTHO05D004082 1.7e-20 102.8 63 77.8
TAR633G0109 Trochodendron aralioides HOM05D003456 ORTHO05D004082 1.7e-20 102.8 63 79.4
arahy.Tifrunner.gnm1.ann1.C03M9B Arachis hypogaea HOM05D003456 ORTHO05D004082 2.2e-20 102.4 63 77.8
arahy.Tifrunner.gnm1.ann1.VF2KJZ Arachis hypogaea HOM05D003456 ORTHO05D004082 2.2e-20 102.4 63 77.8
EL10Ac1g00743 Beta vulgaris HOM05D003456 ORTHO05D004082 2.2e-20 102.4 62 79.0
COL.COLO4_29759 Corchorus olitorius HOM05D003456 ORTHO05D004082 2.2e-20 102.4 62 79.0
Duzib128G1248 Durio zibethinus HOM05D003456 ORTHO05D004082 2.2e-20 102.4 62 79.0
Glyma.03G195000 Glycine max HOM05D003456 ORTHO05D004082 2.2e-20 102.4 62 79.0
Gohir.D09G011800 Gossypium hirsutum HOM05D003456 ORTHO05D004082 2.2e-20 102.4 62 79.0
Gorai.006G013800 Gossypium raimondii HOM05D003456 ORTHO05D004082 2.2e-20 102.4 62 79.0
Lj1g0011692 Lotus japonicus HOM05D003456 ORTHO05D004082 2.2e-20 102.4 62 79.0
Lalb_Chr20g0111761 Lupinus albus HOM05D003456 ORTHO05D004082 2.2e-20 102.4 63 76.2
Phvul.001G189600 Phaseolus vulgaris HOM05D003456 ORTHO05D004082 2.2e-20 102.4 62 79.0
PGR044G1450 Punica granatum HOM05D003456 ORTHO05D004082 2.2e-20 102.4 63 76.2
QL07p039199 Quercus lobata HOM05D003456 ORTHO05D004082 2.2e-20 102.4 63 79.4
Sabra08G0013700 Salix brachista HOM05D003456 ORTHO05D004082 2.2e-20 102.4 63 77.8
Solyc09g009460.4 Solanum lycopersicum HOM05D003456 ORTHO05D004082 2.2e-20 102.4 65 73.8
Sopen09g004180 Solanum pennellii HOM05D003456 ORTHO05D004082 2.2e-20 102.4 65 73.8
CANSAT56G1853 Cannabis sativa HOM05D003456 ORTHO05D004082 2.8e-20 102.1 63 77.8
CANSAT56G3878 Cannabis sativa HOM05D003456 ORTHO05D004082 2.8e-20 102.1 63 77.8
CAN.G397.10 Capsicum annuum HOM05D003456 ORTHO05D004082 2.8e-20 102.1 65 72.3
AUR62013762 Chenopodium quinoa HOM05D003456 ORTHO05D004082 2.8e-20 102.1 63 76.2
AUR62023392 Chenopodium quinoa HOM05D003456 ORTHO05D004082 2.8e-20 102.1 63 76.2
Ciclev10013682m.g Citrus clementina HOM05D003456 ORTHO05D004082 2.8e-20 102.1 57 84.2
FvH4_6g18590 Fragaria vesca HOM05D003456 ORTHO05D004082 2.8e-20 102.1 61 80.3
FAN05G2371 Fragaria x ananassa HOM05D003456 ORTHO05D004082 2.8e-20 102.1 61 80.3
FAN14G1410 Fragaria x ananassa HOM05D003456 ORTHO05D004082 2.8e-20 102.1 61 80.3
Lsat_1_v5_gn_8_24141 Lactuca sativa HOM05D003456 ORTHO05D004082 2.8e-20 102.1 63 76.2
MD12G1035500 Malus domestica HOM05D003456 ORTHO05D004082 2.8e-20 102.1 61 80.3
MD14G1022300 Malus domestica HOM05D003456 ORTHO05D004082 2.8e-20 102.1 61 80.3
RcHm_v2.0_Chr3g0473171 Rosa chinensis HOM05D003456 ORTHO05D004082 2.8e-20 102.1 61 80.3
TWI74G0284 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 2.8e-20 102.1 63 74.6
GSVIVG01033834001 Vitis vinifera HOM05D003456 ORTHO05D004082 2.8e-20 102.1 61 80.3
Migut.F01607 Erythranthe guttata HOM05D003456 ORTHO05D004082 3.7e-20 101.7 63 77.8
FAN05G5536 Fragaria x ananassa HOM05D003456 ORTHO05D004082 3.7e-20 101.7 61 78.7
FAN09G3852 Fragaria x ananassa HOM05D003456 ORTHO05D004082 3.7e-20 101.7 61 78.7
Potri.010G238800 Populus trichocarpa HOM05D003456 ORTHO05D004082 3.7e-20 101.7 63 77.8
Eucgr.J00259 Eucalyptus grandis HOM05D003456 ORTHO05D004082 4.9e-20 101.3 62 75.8
Nitab4.5_0011538g0030 Nicotiana tabacum HOM05D003456 ORTHO05D004082 4.9e-20 101.3 62 79.0
PGR031G3484 Punica granatum HOM05D003456 ORTHO05D004082 4.9e-20 101.3 63 76.2
Sabra10G0187000 Salix brachista HOM05D003456 ORTHO05D004082 4.9e-20 101.3 63 76.2
ATR0789G023 Amborella trichopoda HOM05D003456 ORTHO05D004082 6.3e-20 100.9 63 76.2
arahy.Tifrunner.gnm1.ann1.KEI5RC Arachis hypogaea HOM05D003456 ORTHO05D004082 6.3e-20 100.9 63 76.2
arahy.Tifrunner.gnm1.ann1.P2449T Arachis hypogaea HOM05D003456 ORTHO05D004082 6.3e-20 100.9 63 76.2
Ciclev10017146m.g Citrus clementina HOM05D003456 ORTHO05D004082 6.3e-20 100.9 72 69.4
Cc02_g09640 Coffea canephora HOM05D003456 ORTHO05D004082 6.3e-20 100.9 63 74.6
Hma1.2p1_0232F.1_g097840 Hydrangea macrophylla HOM05D003456 ORTHO05D004082 6.3e-20 100.9 62 75.8
Sc20g0001150 Simmondsia chinensis HOM05D003456 ORTHO05D004082 6.3e-20 100.9 63 73.0
TPR.G9901 Trifolium pratense HOM05D003456 ORTHO05D004082 6.3e-20 100.9 61 80.3
TWI53G1385 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 6.3e-20 100.9 63 73.0
Aqoxy1G03742 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 8.3e-20 100.5 62 79.0
Aqoxy2G01205 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 8.3e-20 100.5 62 79.0
Aqoxy3G02826 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 8.3e-20 100.5 62 79.0
FvH4_2g10490 Fragaria vesca HOM05D003456 ORTHO05D004082 8.3e-20 100.5 61 78.7
Potri.008G020400 Populus trichocarpa HOM05D003456 ORTHO05D004082 8.3e-20 100.5 63 77.8
SGA_v2.0_scaffold62G21335 Striga asiatica HOM05D003456 ORTHO05D004082 8.3e-20 100.5 63 76.2
SGA_v2.0_scaffold85G26612 Striga asiatica HOM05D003456 ORTHO05D004082 8.3e-20 100.5 63 76.2
MELO3C012350.2 Cucumis melo HOM05D003456 ORTHO05D004082 1.1e-19 100.1 63 76.2
Glyma.19G194700 Glycine max HOM05D003456 ORTHO05D004082 1.1e-19 100.1 62 77.4
Oeu054399.2 Olea europaea HOM05D003456 ORTHO05D004082 1.1e-19 100.1 86 60.5
Os01g0105800 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 1.1e-19 100.1 65 73.8
Peaxi162Scf00290g00816 Petunia axillaris HOM05D003456 ORTHO05D004082 1.1e-19 100.1 77 64.9
SalBow6G0063 Salvia bowleyana HOM05D003456 ORTHO05D004082 1.1e-19 100.1 63 76.2
Solyc11g006920.2 Solanum lycopersicum HOM05D003456 ORTHO05D004082 1.1e-19 100.1 62 75.8
Sopen11g002830 Solanum pennellii HOM05D003456 ORTHO05D004082 1.1e-19 100.1 62 75.8
PGSC0003DMG400023972 Solanum tuberosum HOM05D003456 ORTHO05D004082 1.1e-19 100.1 62 75.8
DCAR_020755 Daucus carota HOM05D003456 ORTHO05D004082 1.4e-19 99.8 65 70.8
SalBow6G0069 Salvia bowleyana HOM05D003456 ORTHO05D004082 1.4e-19 99.8 63 77.8
THA.LOC104804331 Tarenaya hassleriana HOM05D003456 ORTHO05D004082 1.4e-19 99.8 63 74.6
Atru.chr12.1024 Acer truncatum HOM05D003456 ORTHO05D004082 1.8e-19 99.4 57 80.7
Oeu026593.1 Olea europaea HOM05D003456 ORTHO05D004082 1.8e-19 99.4 72 68.1
unitig_0.g1020 Utricularia gibba HOM05D003456 ORTHO05D004082 1.8e-19 99.4 63 76.2
MSTRG.27572 Avicennia marina HOM05D003456 ORTHO05D004082 2.4e-19 99.0 63 74.6
FAN24G1424 Fragaria x ananassa HOM05D003456 ORTHO05D004082 2.4e-19 99.0 61 77.0
Manes.09G055901 Manihot esculenta HOM05D003456 ORTHO05D004082 2.4e-19 99.0 61 77.0
Medtr1g060070 Medicago truncatula HOM05D003456 ORTHO05D004082 2.4e-19 99.0 70 70.0
ClCG05G018420 Citrullus lanatus HOM05D003456 ORTHO05D004082 3.1e-19 98.6 62 75.8
ClCG05G021780 Citrullus lanatus HOM05D003456 ORTHO05D004082 3.1e-19 98.6 62 75.8
CsaV3_5G035380 Cucumis sativus L. HOM05D003456 ORTHO05D004082 3.1e-19 98.6 63 74.6
Gohir.A09G013133 Gossypium hirsutum HOM05D003456 ORTHO05D004082 3.1e-19 98.6 62 75.8
Os12g0485500 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 3.1e-19 98.6 63 74.6
vmacro10309 Vaccinium macrocarpon HOM05D003456 ORTHO05D004082 3.1e-19 98.6 57 82.5
AL3G49380 Arabidopsis lyrata HOM05D003456 ORTHO05D004082 4.1e-19 98.2 63 73.0
AT2G16710 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 4.1e-19 98.2 63 73.0
Carub.0003s3046 Capsella rubella HOM05D003456 ORTHO05D004082 4.1e-19 98.2 63 73.0
PGR142G0161 Punica granatum HOM05D003456 ORTHO05D004082 4.1e-19 98.2 82 63.4
BcaB07g31755 Brassica carinata HOM05D003456 ORTHO05D004082 5.4e-19 97.8 63 71.4
BcaB08g34660 Brassica carinata HOM05D003456 ORTHO05D004082 5.4e-19 97.8 63 71.4
BcaC01g02994 Brassica carinata HOM05D003456 ORTHO05D004082 5.4e-19 97.8 63 71.4
A03p45960 Brassica napus HOM05D003456 ORTHO05D004082 5.4e-19 97.8 63 71.4
A09p11090 Brassica napus HOM05D003456 ORTHO05D004082 5.4e-19 97.8 63 71.4
C03p57360 Brassica napus HOM05D003456 ORTHO05D004082 5.4e-19 97.8 63 71.4
BraA03t13724Z Brassica rapa HOM05D003456 ORTHO05D004082 5.4e-19 97.8 63 71.4
BraA09t36751Z Brassica rapa HOM05D003456 ORTHO05D004082 5.4e-19 97.8 63 71.4
Dinv21215 Davidia involucrata HOM05D003456 ORTHO05D004082 5.4e-19 97.8 63 73.0
Thhalv10022903m.g Eutrema salsugineum HOM05D003456 ORTHO05D004082 5.4e-19 97.8 63 71.4
QL04p044862 Quercus lobata HOM05D003456 ORTHO05D004082 5.4e-19 97.8 63 71.4
Rhsim09G0141900 Rhododendron simsii HOM05D003456 ORTHO05D004082 5.4e-19 97.8 56 80.4
Zm00001eb126830 Zea mays HOM05D003456 ORTHO05D004082 5.4e-19 97.8 65 70.8
Aa31LG8G13940 Aethionema arabicum HOM05D003456 ORTHO05D004082 7.0e-19 97.4 63 71.4
Rhsim03G0097900 Rhododendron simsii HOM05D003456 ORTHO05D004082 7.0e-19 97.4 63 73.0
Sp3g30040 Schrenkiella parvula HOM05D003456 ORTHO05D004082 7.0e-19 97.4 63 73.0
Thecc.05G088300 Theobroma cacao HOM05D003456 ORTHO05D004082 7.0e-19 97.4 64 73.4
BolC3t18012H Brassica oleracea HOM05D003456 ORTHO05D004082 9.2e-19 97.1 75 61.3
CSS0039541 Camellia sinensis var. sinensis HOM05D003456 ORTHO05D004082 9.2e-19 97.1 63 73.0
CARHR106940 Cardamine hirsuta HOM05D003456 ORTHO05D004082 9.2e-19 97.1 63 71.4
Cpa.g.sc5.27 Carica papaya HOM05D003456 ORTHO05D004082 9.2e-19 97.1 63 71.4
Zm00001eb334200 Zea mays HOM05D003456 ORTHO05D004082 9.2e-19 97.1 65 70.8
BcaC04g23009 Brassica carinata HOM05D003456 ORTHO05D004082 1.2e-18 96.7 63 71.4
C09p13080 Brassica napus HOM05D003456 ORTHO05D004082 1.2e-18 96.7 63 71.4
PSO170G1366 Papaver somniferum HOM05D003456 ORTHO05D004082 1.2e-18 96.7 57 77.2
Sed0026028 Sechium edule HOM05D003456 ORTHO05D004082 1.2e-18 96.7 62 74.2
CDE02G3384 Ceratophyllum demersum HOM05D003456 ORTHO05D004082 1.6e-18 96.3 63 71.4
Carub.0001s3604 Capsella rubella HOM05D003456 ORTHO05D004082 2.0e-18 95.9 57 75.4
PSO407G0116 Papaver somniferum HOM05D003456 ORTHO05D004082 2.7e-18 95.5 57 75.4
PSO151G0153 Papaver somniferum HOM05D003456 ORTHO05D004082 3.5e-18 95.1 57 75.4
SEGI_09582 Sequoiadendron giganteum HOM05D003456 ORTHO05D004082 4.5e-18 94.7 65 67.7
Dinv09618 Davidia involucrata HOM05D003456 ORTHO05D004082 1.0e-17 93.6 61 72.1
Nitab4.5_0005483g0040 Nicotiana tabacum HOM05D003456 ORTHO05D004082 2.9e-17 92.0 53 79.2
Migut.F00877 Erythranthe guttata HOM05D003456 ORTHO05D004082 5.0e-17 91.3 72 65.3
AT2G36260 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 1.9e-16 89.4 62 72.6
AagrBONN_evm.TU.Sc2ySwM_362.959 Anthoceros agrestis HOM05D003456 ORTHO05D004082 2.5e-16 89.0 60 66.7
Mapoly0089s0049 Marchantia polymorpha HOM05D003456 ORTHO05D004082 2.5e-16 89.0 60 65.0
Pp3c18_19580 Physcomitrium patens HOM05D003456 ORTHO05D004082 3.3e-16 88.6 60 66.7
PSO339G3466 Papaver somniferum HOM05D003456 ORTHO05D004082 1.2e-15 86.7 57 71.9
CBR_g4764 Chara braunii HOM05D003456 ORTHO05D004082 1.6e-15 86.3 59 66.1
PGSC0003DMG402002701 Solanum tuberosum HOM05D003456 ORTHO05D004082 1.6e-15 86.3 55 72.7
RcHm_v2.0_Chr7g0219151 Rosa chinensis HOM05D003456 ORTHO05D004082 2.8e-15 85.5 49 77.6
FAN02G4247 Fragaria x ananassa HOM05D003456 ORTHO05D004082 8.0e-15 84.0 97 50.5
Gohir.D09G135500 Gossypium hirsutum HOM05D003456 ORTHO05D004082 1.0e-14 83.6 102 53.9
Gorai.006G155500 Gossypium raimondii HOM05D003456 ORTHO05D004082 1.0e-14 83.6 102 53.9
Aa31LG5G21390 Aethionema arabicum HOM05D003456 ORTHO05D004082 1.4e-14 83.2 56 62.5
SMO147G0221 Selaginella moellendorffii HOM05D003456 ORTHO05D004082 6.8e-14 80.9 53 64.2
Nitab4.5_0001437g0010 Nicotiana tabacum HOM05D003456 ORTHO05D004082 1.2e-13 80.1 47 74.5
MCO14G517 Micromonas commoda HOM05D003456 ORTHO05D004082 4.4e-13 78.2 60 61.7
Cc00_g28380 Coffea canephora HOM05D003456 ORTHO05D004082 1.3e-12 76.6 60 63.3
Cc05_g02390 Coffea canephora HOM05D003456 ORTHO05D004082 1.3e-12 76.6 60 63.3
VMungo1383G3423 Vigna mungo HOM05D003456 ORTHO05D004082 1.7e-12 76.3 50 76.0
Hund30410 Selenicereus undatus HOM05D003456 ORTHO05D004082 3.2e-11 72.0 38 78.9
PGSC0003DMG400023988 Solanum tuberosum HOM05D003456 ORTHO05D004082 9.2e-11 70.5 39 74.4
Hund30565 Selenicereus undatus HOM05D003456 ORTHO05D004082 1.2e-10 70.1 37 78.4
Haze_26136 Corylus avellana HOM05D003456 ORTHO05D004082 1.0e-09 67.0 58 50.0
C03p57390 Brassica napus HOM05D003456 ORTHO05D004082 1.5e-08 63.2 41 68.3
BolC3t18015H Brassica oleracea HOM05D003456 ORTHO05D004082 1.5e-08 63.2 41 68.3
Oeu024811.2 Olea europaea HOM05D003456 ORTHO05D004082 3.6e-07 58.5 95 40.0
CAN.G645.14 Capsicum annuum HOM05D000043 ORTHO05D001371 8.0e-07 57.4 38 76.3
Psat6g013760 Pisum sativum HOM05D003456 ORTHO05D004082 8.0e-07 57.4 39 74.4
QL04p047329 Quercus lobata HOM05D003456 ORTHO05D001557 8.0e-07 57.4 39 74.4
QL07p038879 Quercus lobata HOM05D003456 ORTHO05D004082 8.0e-07 57.4 39 74.4
Actinidia31104 Actinidia chinensis HOM05D003456 ORTHO05D004082 2.3e-06 55.8 39 71.8
Haze_27704 Corylus avellana HOM05D003456 ORTHO05D004082 4.0e-06 55.1 53 39.6
Hund22272 Selenicereus undatus HOM05D003456 ORTHO05D004082 4.0e-06 55.1 33 78.8
Nn2g14150 Nelumbo nucifera HOM05D003456 ORTHO05D004082 8.9e-06 53.9 39 69.2


User provided reference genes

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