Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 4.3e-101 371.3 185 100.0
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 3.2e-88 328.6 185 87.6
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 7.1e-88 327.4 185 85.9
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 8.9e-83 310.5 185 80.5
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 1.2e-82 310.1 185 81.1
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 4.3e-77 291.6 188 77.7
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 1.3e-76 290.0 188 77.7
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 8.1e-76 287.3 185 74.1
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 4.0e-75 285.0 188 77.1
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 2.2e-73 279.3 188 73.4
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 2.9e-73 278.9 187 74.9
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 6.4e-73 277.7 187 75.4
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.9e-72 276.2 188 71.8
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 1.6e-71 273.1 188 70.2
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 1.6e-71 273.1 188 70.2
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 2.7e-71 272.3 199 69.3
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 3.5e-71 271.9 186 72.0
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 3.5e-71 271.9 186 72.0
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 4.6e-71 271.6 199 69.3
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 5.1e-70 268.1 189 69.8
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 8.7e-70 267.3 189 70.4
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 8.7e-70 267.3 176 73.3
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 1.1e-69 266.9 189 70.4
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 1.5e-69 266.5 186 71.0
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 1.5e-69 266.5 189 69.8
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 1.5e-69 266.5 189 69.8
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 1.5e-69 266.5 189 69.8
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 1.5e-69 266.5 189 69.8
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.9e-69 266.2 189 68.3
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 9.6e-69 263.8 189 68.8
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 2.1e-68 262.7 189 67.7
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 2.8e-68 262.3 189 69.3
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 6.2e-68 261.2 189 67.2
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 8.1e-68 260.8 191 68.6
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 3.1e-67 258.8 189 67.7
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 3.1e-67 258.8 189 68.3
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 4.0e-67 258.5 189 67.2
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 1.5e-66 256.5 189 67.2
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 1.5e-66 256.5 186 69.4
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 4.5e-66 255.0 182 69.8
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 4.5e-66 255.0 182 69.8
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 5.8e-66 254.6 189 68.3
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 7.6e-66 254.2 186 66.1
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 7.6e-66 254.2 175 70.9
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 9.9e-66 253.8 179 67.6
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.3e-65 253.4 175 68.0
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.3e-65 253.4 175 68.0
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 1.7e-65 253.1 189 63.5
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.7e-65 253.1 182 69.2
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 2.2e-65 252.7 175 70.3
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 3.8e-65 251.9 185 69.2
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 4.9e-65 251.5 186 68.3
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 1.4e-64 250.0 175 69.1
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 1.4e-64 250.0 179 68.2
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 1.4e-64 250.0 189 65.6
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 1.4e-64 250.0 189 65.6
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 2.4e-64 249.2 179 67.0
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 2.4e-64 249.2 174 70.1
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 3.2e-64 248.8 186 65.1
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 4.2e-64 248.4 175 70.9
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 4.2e-64 248.4 182 68.1
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 7.1e-64 247.7 204 62.3
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 9.3e-64 247.3 177 65.5
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 1.6e-63 246.5 184 65.2
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.5e-63 245.4 186 68.3
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.5e-63 245.4 186 67.7
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 3.5e-63 245.4 175 68.0
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 4.6e-63 245.0 195 63.6
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 6.0e-63 244.6 177 65.5
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 1.0e-62 243.8 176 68.8
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 1.3e-62 243.4 189 63.0
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 1.3e-62 243.4 175 65.7
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 2.3e-62 242.7 182 65.9
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 5.1e-62 241.5 179 65.9
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 6.7e-62 241.1 197 62.4
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 1.1e-61 240.4 174 67.2
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 1.1e-61 240.4 185 62.7
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.1e-61 240.4 186 67.2
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 3.3e-61 238.8 180 63.3
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 5.6e-61 238.0 174 66.7
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 2.1e-60 236.1 189 62.4
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 3.7e-60 235.3 184 62.5
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 3.7e-60 235.3 175 65.1
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 3.7e-60 235.3 180 63.9
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 8.1e-60 234.2 175 63.4
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 1.8e-59 233.0 170 65.3
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 2.4e-59 232.6 189 60.8
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 9.0e-59 230.7 175 62.9
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 7.6e-58 227.6 185 61.1
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 2.2e-57 226.1 177 60.5
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 2.9e-57 225.7 197 57.9
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 2.9e-57 225.7 177 60.5
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 1.4e-56 223.4 159 69.2
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 3.2e-56 222.2 152 69.7
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 9.3e-56 220.7 184 60.3
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 3.5e-55 218.8 271 46.1
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 1.9e-53 213.0 193 54.9
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 1.5e-50 203.4 186 55.4
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 4.5e-50 201.8 182 54.9
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 5.9e-50 201.4 172 55.8
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 1.7e-49 199.9 157 61.8
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 6.1e-47 191.4 163 60.1
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 7.9e-47 191.0 192 52.1
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 1.3e-46 190.3 192 51.0
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 2.3e-46 189.5 192 51.0
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 6.7e-46 188.0 176 54.0
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 3.3e-45 185.7 192 51.6
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 7.4e-45 184.5 185 52.4
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 9.7e-45 184.1 187 56.7
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 1.1e-43 180.6 175 53.7
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 4.1e-43 178.7 175 53.7
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 7.7e-42 174.5 178 57.3
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 1.3e-41 173.7 175 52.0
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 3.8e-41 172.2 175 51.4
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 3.8e-41 172.2 175 51.4
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 3.8e-41 172.2 175 51.4
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 5.0e-41 171.8 207 46.4
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 1.4e-40 170.2 186 49.5
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 1.4e-40 170.2 186 49.5
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 1.9e-40 169.9 183 50.3
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 2.6e-37 159.5 141 56.7
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 2.9e-33 146.0 183 47.0
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 5.0e-33 145.2 106 67.0
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.9e-32 143.3 155 52.9
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.8e-27 126.7 102 64.7
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 4.5e-26 122.1 74 78.4
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 3.3e-21 105.9 78 57.7
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 9.7e-21 104.4 157 40.1
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 2.2e-20 103.2 82 64.6
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 8.2e-20 101.3 81 60.5
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 2.7e-18 96.3 159 34.0
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 7.7e-18 94.7 84 61.9
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.3e-17 94.0 73 63.0
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 2.2e-17 93.2 81 61.7
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.8e-17 92.4 73 61.6
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 8.5e-17 91.3 69 63.8
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 7.2e-16 88.2 137 37.2
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 7.2e-16 88.2 61 70.5
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 1.6e-15 87.0 94 54.3
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 2.7e-15 86.3 119 36.1
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 3.8e-09 65.9 91 46.2
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 8.6e-09 64.7 66 56.1


User provided reference genes

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