Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 0.0e+00 1370.5 678 100.0
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 0.0e+00 1197.6 674 88.7
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 0.0e+00 1101.7 682 82.7
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 0.0e+00 1100.9 671 82.4
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 2.0e-305 1052.0 679 78.9
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 1.9e-300 1035.4 690 77.2
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 2.1e-299 1031.9 686 77.7
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 8.1e-299 1030.0 686 77.6
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 5.6e-292 1007.3 688 76.0
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 1.3e-291 1006.1 688 75.7
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 6.4e-288 993.8 687 75.4
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 3.2e-279 964.9 687 74.2
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 5.9e-249 864.4 692 65.3
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 9.4e-247 857.1 689 65.6
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 4.0e-245 851.7 676 65.2
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 2.2e-243 845.9 676 66.7
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 2.9e-240 835.5 677 64.7
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 5.5e-239 831.2 679 64.1
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 2.7e-238 828.9 673 66.0
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 2.7e-238 828.9 684 64.6
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 1.4e-237 826.6 675 64.6
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 3.4e-236 822.0 677 64.0
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 9.8e-236 820.5 681 63.9
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 2.2e-235 819.3 707 62.5
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 1.8e-234 816.2 676 63.3
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 7.7e-233 810.8 680 62.8
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 1.5e-231 806.6 673 63.3
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 2.5e-231 805.8 676 63.2
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 7.2e-231 804.3 676 63.5
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 8.0e-230 800.8 675 62.7
LjContig00274_ERROPOS1100000g0006521 Lotus japonicus HOM05D003691 ORTHO05D004288 1.2e-228 797.0 603 67.7
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 7.5e-228 794.3 676 62.0
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 1.7e-227 793.1 684 61.4
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 2.8e-227 792.3 673 63.4
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 4.9e-227 791.6 676 62.7
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 1.1e-226 790.4 682 62.5
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 1.8e-226 789.6 671 62.4
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 2.4e-226 789.3 682 62.6
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 3.1e-226 788.9 677 61.4
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 1.2e-225 786.9 678 61.7
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 3.5e-225 785.4 679 62.0
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 1.7e-224 783.1 674 61.9
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 2.9e-224 782.3 687 60.8
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 8.6e-224 780.8 677 61.4
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 5.6e-223 778.1 676 61.8
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 5.6e-223 778.1 674 61.7
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 7.3e-223 777.7 677 61.2
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 1.6e-222 776.5 676 60.8
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 5.2e-221 771.5 673 60.5
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.4e-220 768.8 677 60.3
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 5.7e-220 768.1 687 60.3
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 1.1e-218 763.8 673 60.0
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 2.4e-218 762.7 686 59.9
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 3.2e-218 762.3 693 58.9
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 1.6e-217 760.0 674 60.5
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 5.9e-217 758.1 680 60.3
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 1.6e-214 750.0 690 58.7
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 2.0e-212 743.0 680 60.1
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.4e-212 742.3 677 59.4
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 7.5e-212 741.1 677 58.8
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 9.8e-212 740.7 682 58.2
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 1.3e-211 740.3 687 58.5
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 2.2e-211 739.6 682 58.4
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 2.9e-211 739.2 685 58.5
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 8.3e-211 737.6 675 58.8
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 2.4e-210 736.1 684 58.8
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 5.4e-210 734.9 659 59.5
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 4.6e-209 731.9 681 58.6
TAR626G1388 Trochodendron aralioides HOM05D003691 ORTHO05D004288 6.0e-209 731.5 616 61.4
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 3.0e-208 729.2 683 57.7
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 5.0e-208 728.4 673 58.7
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 7.3e-207 724.5 684 56.7
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 1.2e-206 723.8 681 58.0
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 1.6e-206 723.4 690 58.4
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 2.8e-206 722.6 682 56.7
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 3.1e-205 719.2 684 56.4
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 6.8e-205 718.0 692 57.4
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 6.8e-205 718.0 698 56.7
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 8.9e-205 717.6 695 56.0
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 1.2e-204 717.2 672 58.0
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 3.4e-204 715.7 672 58.3
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 7.5e-204 714.5 666 58.6
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 2.2e-203 713.0 688 56.4
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 2.2e-203 713.0 682 56.3
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 3.7e-203 712.2 697 56.7
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 3.2e-202 709.1 673 58.1
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 4.1e-202 708.8 672 57.9
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 9.2e-202 707.6 672 57.3
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 1.6e-201 706.8 683 56.4
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 6.0e-201 704.9 683 57.8
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 2.3e-200 703.0 685 57.5
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 1.2e-198 697.2 684 56.4
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 3.6e-198 695.7 694 56.6
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 4.7e-198 695.3 680 57.1
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 8.1e-198 694.5 673 57.1
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 8.1e-198 694.5 673 57.2
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 6.8e-197 691.4 686 57.1
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 5.4e-194 681.8 597 60.8
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 9.2e-194 681.0 662 56.9
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 9.2e-194 681.0 722 54.2
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 1.6e-193 680.2 684 54.5
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.7e-193 679.5 700 53.7
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 1.1e-191 674.1 683 54.9
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 1.5e-191 673.7 726 53.3
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 1.8e-189 666.8 699 52.9
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 5.8e-188 661.8 689 53.0
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 1.1e-186 657.5 695 52.9
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 2.7e-185 652.9 677 54.5
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 3.4e-180 636.0 708 52.1
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 2.7e-177 626.3 670 53.4
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 9.6e-175 617.8 673 52.6
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 2.1e-174 616.7 662 53.6
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 2.8e-174 616.3 650 52.8
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 1.1e-173 614.4 673 52.9
Cpa.g.sc87.104 Carica papaya HOM05D003691 ORTHO05D004288 3.0e-168 596.3 522 61.3
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 7.4e-167 591.7 735 49.3
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 9.0e-165 584.7 684 50.0
BcaB02g10460 Brassica carinata HOM05D003691 ORTHO05D004288 1.2e-164 584.3 514 59.5
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.3e-163 580.9 664 51.8
HPP92_023149 Vanilla planifolia HOM05D003691 ORTHO05D004288 1.3e-163 580.9 670 51.5
BcaB06g28605 Brassica carinata HOM05D003691 ORTHO05D004288 5.1e-160 568.9 639 52.4
Zm00001eb162990 Zea mays HOM05D003691 ORTHO05D004288 2.4e-157 560.1 665 49.9
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 8.5e-155 551.6 695 47.3
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 2.3e-152 543.5 662 48.2
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 3.0e-152 543.1 693 47.3
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 6.7e-152 542.0 514 55.3
CiPaw.11G193000 Carya illinoinensis HOM05D003691 ORTHO05D004288 4.8e-150 535.8 517 57.8
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.9e-146 523.9 598 51.2
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.6e-145 520.8 698 45.8
Lalb_Chr19g0136071 Lupinus albus HOM05D003691 ORTHO05D004288 2.3e-144 516.9 368 75.3
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 7.7e-140 501.9 534 52.2
Dinv22243 Davidia involucrata HOM05D003691 ORTHO05D004288 1.1e-138 498.0 555 52.6
C04p62100 Brassica napus HOM05D003691 ORTHO05D004288 4.8e-134 482.6 465 57.2
COL.COLO4_09704 Corchorus olitorius HOM05D003691 ORTHO05D004288 2.0e-132 477.2 510 53.5
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 2.9e-131 473.4 688 44.0
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 7.5e-127 458.8 299 74.9
Gohir.A07G186000 Gossypium hirsutum HOM05D003691 ORTHO05D004288 5.3e-125 452.6 447 55.9
BcaC02g07908 Brassica carinata HOM05D003691 ORTHO05D004288 7.0e-125 452.2 664 43.7
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 1.3e-118 431.4 702 41.0
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 3.1e-117 426.8 608 43.1
Actinidia10811 Actinidia chinensis HOM05D003691 ORTHO05D004288 9.1e-117 425.2 455 54.1
Lj8A171G44 Lonicera japonica HOM05D003691 ORTHO05D004288 1.1e-114 418.3 493 50.5
SEGI_30766 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 4.1e-109 399.8 591 44.7
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 3.8e-107 393.3 713 37.2
AagrBONN_evm.TU.Sc2ySwM_228.2537 Anthoceros agrestis HOM05D003691 ORTHO05D004288 9.5e-106 388.7 720 37.6
AUR62020385 Chenopodium quinoa HOM05D003691 ORTHO05D004288 6.8e-104 382.5 307 64.2
SEGI_37895 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 5.6e-98 362.8 580 42.1
Oeu036739.1 Olea europaea HOM05D003691 ORTHO05D004288 1.2e-97 361.7 266 70.3
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 1.1e-90 338.6 793 33.5
FAN25G2100 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.5e-90 338.2 289 61.9
Pp3c7_4280 Physcomitrium patens HOM05D003691 ORTHO05D004288 4.3e-90 336.7 703 36.7
MD03G1195700 Malus domestica HOM05D003691 ORTHO05D004288 4.7e-89 333.2 416 45.2
MD17G1101300 Malus domestica HOM05D003691 ORTHO05D004288 1.9e-74 284.6 262 61.5
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 5.8e-71 273.1 332 47.0
MCO04G245 Micromonas commoda HOM05D003691 ORTHO05D004288 1.1e-69 268.9 632 33.5
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 4.8e-65 253.4 424 40.3
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 2.4e-64 251.1 300 46.3
PRCOL_00002032 Prasinoderma coloniale HOM05D003691 ORTHO05D004288 3.2e-61 240.7 618 30.9
Actinidia10812 Actinidia chinensis HOM05D003691 ORTHO05D004288 5.5e-53 213.4 211 52.6
CDE09G1127 Ceratophyllum demersum HOM05D003691 ORTHO05D004288 1.4e-48 198.7 228 51.8
Cfa026695 Carpinus fangiana HOM05D003691 ORTHO05D004288 2.2e-46 191.4 729 27.4
Sed0010458 Sechium edule HOM05D003691 ORTHO05D004288 7.9e-44 183.0 243 44.4
MD03G1195600 Malus domestica HOM05D003691 ORTHO05D004288 2.4e-32 144.8 163 54.0
Lj8A171G43 Lonicera japonica HOM05D003691 ORTHO05D004288 6.5e-30 136.7 143 51.0
SEGI_16706 Sequoiadendron giganteum HOM05D003691 ORTHO05D017750 2.6e-23 114.8 105 61.0
C04p62090 Brassica napus HOM05D003691 ORTHO05D004288 1.3e-22 112.5 124 52.4
arahy.Tifrunner.gnm1.ann1.NAA2I0 Arachis hypogaea HOM05D003691 ORTHO05D004288 2.5e-21 108.2 61 90.2
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 4.4e-18 97.4 81 60.5
TPR.G2961 Trifolium pratense HOM05D001978 ORTHO05D003036 3.7e-17 94.4 66 63.6
CAN.G574.39 Capsicum annuum HOM05D003691 ORTHO05D004288 1.1e-16 92.8 88 53.4
ATR0772G025 Amborella trichopoda HOM05D003691 ORTHO05D004288 3.1e-16 91.3 123 44.7
SHI10371 Sapria himalayana HOM05D003691 ORTHO05D004288 2.6e-15 88.2 88 58.0
Glyma.13G310451 Glycine max HOM05D003691 ORTHO05D004288 3.5e-15 87.8 49 79.6
SEGI_15855 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 4.5e-15 87.4 103 48.5
EL10Ac4g08622 Beta vulgaris HOM05D003691 ORTHO05D019836 2.2e-14 85.1 60 68.3
Rhsim07G0255900 Rhododendron simsii HOM05D000234 ORTHO05D004288 8.5e-14 83.2 135 40.0
FAN16G1928 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.5e-13 82.4 88 50.0
TPR.G35222 Trifolium pratense HOM05D003691 ORTHO05D004288 2.5e-13 81.6 60 65.0
CAN.G574.40 Capsicum annuum HOM05D003691 ORTHO05D004288 7.2e-13 80.1 64 56.2
MD17G1101200 Malus domestica HOM05D003691 ORTHO05D004288 2.7e-12 78.2 127 42.5
Lj8A127T49 Lonicera japonica HOM05D003691 ORTHO05D004288 5.2e-11 73.9 79 55.7
SHI10370 Sapria himalayana HOM05D000105 ORTHO05D000023 8.8e-11 73.2 41 85.4
Actinidia03601 Actinidia chinensis HOM05D003691 ORTHO05D004288 3.7e-09 67.8 48 62.5
MD17G1101000 Malus domestica HOM05D003691 ORTHO05D004288 3.1e-08 64.7 45 66.7
Cre13.g589300 Chlamydomonas reinhardtii HOM05D003691 ORTHO05D004288 2.7e-07 61.6 258 21.7


User provided reference genes

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