Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 1.6e-157 559.3 275 100.0
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 2.6e-147 525.4 277 93.9
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 1.9e-145 519.2 275 92.0
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 3.9e-143 511.5 277 91.7
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 4.7e-136 488.0 267 89.5
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 4.1e-132 474.9 268 86.9
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 1.2e-131 473.4 267 85.8
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 7.2e-129 464.2 277 84.1
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 4.7e-128 461.5 277 83.4
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 9.7e-126 453.8 257 86.4
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 2.2e-125 452.6 256 87.1
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 1.4e-124 449.9 259 84.6
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 1.4e-124 449.9 257 86.0
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 3.5e-123 445.3 269 82.5
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 5.9e-123 444.5 276 81.5
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 1.0e-122 443.7 260 84.2
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.3e-122 443.4 264 81.8
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.3e-122 443.4 264 81.8
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 2.2e-122 442.6 269 82.9
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 3.8e-122 441.8 271 81.5
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 3.8e-122 441.8 272 80.9
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 5.0e-122 441.4 264 81.4
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 6.5e-122 441.0 254 85.0
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.2e-121 438.7 264 80.7
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 7.2e-121 437.6 271 80.8
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 9.4e-121 437.2 269 81.0
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 1.2e-120 436.8 272 80.1
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 6.1e-120 434.5 282 78.7
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 6.1e-120 434.5 274 79.2
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 1.4e-119 433.3 241 86.3
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 2.3e-119 432.6 279 77.8
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 4.0e-119 431.8 274 78.8
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 5.2e-119 431.4 252 84.1
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 6.8e-119 431.0 273 78.8
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 1.5e-118 429.9 255 81.6
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 5.7e-118 427.9 256 81.6
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 1.7e-117 426.4 243 85.6
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 2.8e-117 425.6 259 81.1
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 2.8e-117 425.6 240 84.6
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 3.7e-117 425.2 271 78.6
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 6.3e-117 424.5 241 84.2
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 8.3e-117 424.1 267 79.4
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 8.3e-117 424.1 267 79.4
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 8.3e-117 424.1 271 78.2
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 8.3e-117 424.1 249 83.1
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 1.1e-116 423.7 270 78.9
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 1.1e-116 423.7 270 78.9
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 1.4e-116 423.3 264 78.0
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 1.4e-116 423.3 251 82.9
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 2.4e-116 422.5 240 84.6
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 4.1e-116 421.8 258 80.2
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 5.4e-116 421.4 240 84.6
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 1.6e-115 419.9 257 78.2
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 2.7e-115 419.1 272 76.8
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 3.5e-115 418.7 258 79.5
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 5.9e-115 417.9 250 83.6
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.9e-114 415.6 264 78.4
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 3.8e-114 415.2 241 83.0
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 5.0e-114 414.8 255 80.8
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 6.5e-114 414.5 241 83.8
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 1.5e-113 413.3 222 87.8
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 1.5e-113 413.3 240 84.2
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 1.5e-113 413.3 278 74.8
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 1.9e-113 412.9 237 82.7
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 4.2e-113 411.8 251 80.1
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 4.2e-113 411.8 251 80.1
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 4.2e-113 411.8 251 80.1
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 5.5e-113 411.4 240 83.8
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 5.5e-113 411.4 256 77.7
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.2e-112 410.2 247 79.8
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 2.1e-112 409.5 250 80.0
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 2.1e-112 409.5 256 78.5
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 2.7e-112 409.1 240 83.8
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 6.1e-112 407.9 275 74.9
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 2.3e-111 406.0 250 79.6
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 6.8e-111 404.4 258 77.1
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 8.8e-111 404.1 240 81.2
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 8.8e-111 404.1 250 79.6
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 2.0e-110 402.9 252 77.4
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 2.0e-110 402.9 260 76.9
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 2.0e-110 402.9 235 81.3
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 3.4e-110 402.1 240 79.2
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 4.4e-110 401.7 263 74.5
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 1.7e-109 399.8 254 76.8
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 1.7e-109 399.8 252 77.4
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 3.7e-109 398.7 247 78.1
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 8.3e-109 397.5 253 76.3
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 4.1e-108 395.2 239 77.8
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 4.1e-108 395.2 263 74.9
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 1.6e-107 393.3 392 56.4
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 2.7e-107 392.5 291 71.8
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 3.5e-107 392.1 241 79.3
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 4.5e-107 391.7 270 71.9
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 5.9e-107 391.3 265 72.1
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 5.9e-107 391.3 253 75.1
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 5.9e-107 391.3 264 72.3
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 1.0e-106 390.6 271 73.8
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 2.3e-106 389.4 248 77.0
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 2.9e-106 389.0 256 75.0
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 6.6e-106 387.9 247 76.5
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 4.7e-104 381.7 279 69.5
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 6.8e-103 377.9 242 77.3
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 5.7e-102 374.8 225 78.2
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 6.3e-101 371.3 238 74.8
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.1e-100 370.5 228 79.4
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 4.6e-99 365.2 253 70.8
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 4.3e-97 358.6 192 90.6
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 8.9e-95 350.9 250 70.8
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 4.1e-92 342.0 257 67.3
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 7.0e-92 341.3 283 62.9
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 9.2e-92 340.9 259 67.2
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 6.0e-91 338.2 246 69.5
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 3.0e-90 335.9 229 71.6
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 3.9e-90 335.5 266 65.8
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 1.1e-87 327.4 242 64.9
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 4.4e-86 322.0 238 66.8
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 2.9e-85 319.3 246 63.8
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 3.6e-80 302.4 238 61.8
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 1.8e-79 300.1 178 84.3
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 8.9e-79 297.7 224 67.9
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 3.4e-78 295.8 280 56.8
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 5.4e-76 288.5 175 77.1
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 6.6e-74 281.6 242 60.7
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 1.6e-72 276.9 294 53.4
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 1.8e-71 273.5 203 67.5
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 4.3e-65 252.3 230 57.0
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 1.8e-63 246.9 266 52.6
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 1.0e-58 231.1 171 63.2
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 3.3e-57 226.1 135 83.0
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 1.4e-55 220.7 124 86.3
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 3.1e-55 219.5 137 79.6
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 7.9e-51 204.9 223 45.3
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 5.3e-47 192.2 126 75.4
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 2.1e-43 180.3 220 43.2
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 3.5e-43 179.5 219 42.5
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.1e-41 174.5 108 78.7
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 5.0e-37 159.1 116 72.4
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 5.7e-33 145.6 87 77.0
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 6.3e-32 142.1 84 79.8
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 4.1e-31 139.4 148 52.7
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 9.0e-31 138.3 120 60.8
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 2.5e-25 120.2 109 63.3
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 1.3e-24 117.9 83 73.5
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 4.8e-24 115.9 254 30.7
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 6.1e-19 99.0 69 72.5
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 6.3e-16 89.0 86 53.5
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 1.8e-15 87.4 160 40.6
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.6e-14 83.6 48 83.3
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 4.7e-11 72.8 70 58.6
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 1.0e-10 71.6 72 55.6
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 2.2e-08 63.9 208 28.4
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 1.4e-07 61.2 174 28.2
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 7.0e-07 58.9 245 25.3
Ciclev10001943m.g Citrus clementina HOM05D003774 ORTHO05D009174 1.2e-06 58.2 244 25.4
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 2.0e-06 57.4 252 27.0
AUR62023544 Chenopodium quinoa HOM05D003774 ORTHO05D009174 2.7e-06 57.0 289 24.9
Ciclev10030258m.g Citrus clementina HOM05D004677 ORTHO05D005746 4.5e-06 56.2 37 70.3
AagrBONN_evm.TU.Sc2ySwM_117.58 Anthoceros agrestis HOM05D004677 ORTHO05D074401 5.9e-06 55.8 53 49.1
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 7.7e-06 55.5 236 25.4


User provided reference genes

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