Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 1.6e-68 262.7 136 100.0
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 4.4e-63 244.6 136 94.1
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 3.9e-51 204.9 136 80.1
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 1.9e-50 202.6 136 78.7
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 5.6e-50 201.1 137 78.8
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 1.3e-43 179.9 136 72.8
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 1.5e-39 166.4 136 68.4
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 1.7e-38 162.9 136 64.0
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 1.1e-37 160.2 136 61.0
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 1.6e-36 156.4 133 61.7
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 7.4e-34 147.5 136 59.6
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 1.6e-33 146.4 128 59.4
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 3.8e-30 135.2 136 55.1
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 1.4e-29 133.3 75 92.0
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 1.9e-29 132.9 136 57.4
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 1.6e-28 129.8 136 54.4
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 2.3e-27 125.9 92 68.5
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 3.9e-27 125.2 92 68.5
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 3.4e-23 112.1 92 62.0
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 7.2e-21 104.4 93 57.0
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.7e-20 102.4 96 59.4
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.7e-20 102.4 96 59.4
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.7e-20 102.4 96 59.4
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 6.1e-20 101.3 77 71.4
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 1.0e-19 100.5 97 54.6
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 1.0e-19 100.5 79 68.4
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 2.3e-19 99.4 115 44.3
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 3.9e-19 98.6 93 53.8
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 5.1e-19 98.2 96 55.2
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 6.7e-19 97.8 98 54.1
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 2.5e-18 95.9 94 52.1
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 5.7e-18 94.7 96 53.1
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 5.7e-18 94.7 93 53.8
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 2.8e-17 92.4 124 41.9
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 1.4e-16 90.1 95 51.6
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 3.1e-16 89.0 88 55.7
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 4.1e-16 88.6 96 56.2
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 4.1e-16 88.6 83 62.7
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 5.3e-16 88.2 81 58.0
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 6.9e-16 87.8 132 43.9
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 6.9e-16 87.8 124 41.9
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 1.5e-15 86.7 90 48.9
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 2.0e-15 86.3 132 43.2
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 2.6e-15 85.9 99 46.5
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 3.4e-15 85.5 80 58.8
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 3.4e-15 85.5 88 51.1
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 3.4e-15 85.5 83 61.4
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 3.4e-15 85.5 124 41.1
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 4.5e-15 85.1 136 40.4
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 7.7e-15 84.3 84 52.4
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 7.7e-15 84.3 84 52.4
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 7.7e-15 84.3 117 40.2
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 7.7e-15 84.3 91 46.2
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 2.9e-14 82.4 104 46.2
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 3.8e-14 82.0 130 38.5
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 5.0e-14 81.6 84 56.0
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 6.5e-14 81.3 84 52.4
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 6.5e-14 81.3 87 54.0
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 8.5e-14 80.9 91 45.1
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 1.1e-13 80.5 80 57.5
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 1.1e-13 80.5 73 56.2
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 1.9e-13 79.7 50 80.0
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 5.5e-13 78.2 89 46.1
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 5.5e-13 78.2 87 49.4
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 7.2e-13 77.8 82 53.7
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 9.4e-13 77.4 84 50.0
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 1.2e-12 77.0 90 48.9
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 1.2e-12 77.0 112 42.0
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 1.6e-12 76.6 87 46.0
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 2.7e-12 75.9 77 49.4
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 4.7e-12 75.1 92 48.9
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 6.1e-12 74.7 47 72.3
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 1.4e-11 73.6 81 44.4
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 1.4e-11 73.6 94 44.7
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 1.4e-11 73.6 94 44.7
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 1.4e-11 73.6 94 44.7
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 1.8e-11 73.2 84 47.6
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 1.8e-11 73.2 112 40.2
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 3.0e-11 72.4 83 50.6
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 8.8e-11 70.9 86 45.3
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 8.8e-11 70.9 45 73.3
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 2.0e-10 69.7 92 42.4
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 2.6e-10 69.3 100 41.0
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 2.6e-10 69.3 86 43.0
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 3.3e-10 68.9 86 43.0
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 4.4e-10 68.6 125 39.2
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 5.7e-10 68.2 92 43.5
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 9.7e-10 67.4 130 35.4
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 1.7e-09 66.6 86 43.0
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 2.8e-09 65.9 79 45.6
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 2.8e-09 65.9 76 47.4
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 1.1e-08 63.9 70 50.0
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 1.4e-08 63.5 76 46.1
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 3.1e-08 62.4 45 66.7
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 3.1e-08 62.4 47 61.7
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 4.1e-08 62.0 70 47.1
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 5.3e-08 61.6 110 38.2
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 5.3e-08 61.6 76 46.1
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 5.3e-08 61.6 116 34.5
Zm00001eb050690 Zea mays HOM05D006388 ORTHO05D008026 5.3e-08 61.6 47 59.6
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 3.4e-07 58.9 76 44.7
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 3.4e-07 58.9 75 45.3
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 1.3e-06 57.0 77 42.9
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 1.7e-06 56.6 39 66.7


User provided reference genes

Program Settings