Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 1.5e-170 602.8 311 100.0
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 6.6e-139 497.7 312 84.9
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 9.0e-128 460.7 311 81.4
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 5.8e-119 431.4 312 77.2
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 1.7e-110 403.3 310 72.6
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 1.3e-105 387.1 301 70.8
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 4.8e-105 385.2 321 72.6
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 4.8e-105 385.2 321 72.6
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 1.5e-103 380.2 283 74.2
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.6e-100 370.2 306 69.3
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 5.0e-94 348.6 306 68.0
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 3.6e-92 342.4 320 63.4
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 9.7e-90 334.3 318 65.4
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 2.8e-89 332.8 309 65.0
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 4.8e-89 332.0 308 66.9
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 1.4e-88 330.5 298 65.4
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 2.4e-88 329.7 306 64.1
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 9.1e-88 327.8 293 67.2
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 2.6e-87 326.2 313 64.2
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 5.9e-87 325.1 299 66.2
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 1.7e-86 323.6 316 62.3
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 5.5e-85 318.5 251 72.5
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 7.2e-85 318.2 288 67.0
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 2.1e-84 316.6 307 64.5
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 4.7e-84 315.5 310 62.3
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 1.2e-82 310.8 245 73.5
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 3.4e-82 309.3 284 64.8
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 4.8e-81 305.4 231 72.7
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 4.8e-81 305.4 309 62.5
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.4e-80 303.9 319 60.2
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 5.3e-80 302.0 311 62.7
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 3.5e-79 299.3 312 61.2
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 1.0e-78 297.7 313 58.1
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 2.9e-78 296.2 316 59.8
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 3.8e-78 295.8 313 60.4
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 8.5e-78 294.7 312 59.0
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.9e-77 293.5 230 72.2
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.2e-77 292.7 299 60.2
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 3.2e-77 292.7 311 60.8
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 2.1e-76 290.0 230 71.3
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 2.7e-76 289.7 299 59.9
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 3.0e-75 286.2 248 66.5
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 4.0e-75 285.8 311 59.5
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 5.2e-75 285.4 308 57.5
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 5.2e-75 285.4 308 56.2
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 8.8e-75 284.6 320 56.9
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.5e-74 283.9 297 61.3
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.5e-74 283.9 315 58.1
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 2.6e-74 283.1 308 55.8
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 2.6e-74 283.1 313 57.2
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 7.5e-74 281.6 304 58.6
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 1.3e-73 280.8 279 61.3
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 1.7e-73 280.4 270 65.6
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 2.8e-73 279.6 278 63.3
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 2.8e-73 279.6 304 58.2
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 2.8e-73 279.6 307 57.3
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 2.4e-72 276.6 304 59.2
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 4.1e-72 275.8 324 56.5
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 1.3e-70 270.8 350 54.9
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.7e-70 270.4 306 57.8
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 2.3e-70 270.0 321 55.1
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.9e-70 269.6 306 55.9
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 1.5e-69 267.3 293 59.0
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 2.5e-69 266.5 255 65.9
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 2.5e-69 266.5 254 63.0
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 4.2e-69 265.8 303 56.8
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 5.5e-69 265.4 284 58.5
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 7.2e-69 265.0 311 57.2
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 7.2e-69 265.0 318 53.8
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 3.6e-68 262.7 247 62.3
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 1.2e-66 257.7 220 66.8
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 4.4e-66 255.8 303 54.1
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 5.7e-66 255.4 233 66.1
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 5.7e-66 255.4 302 56.6
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 7.5e-66 255.0 320 48.8
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 9.8e-66 254.6 291 56.4
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 1.3e-65 254.2 228 64.0
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 2.8e-65 253.1 244 64.3
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 2.4e-64 250.0 321 49.2
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 3.2e-64 249.6 325 51.7
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 3.2e-64 249.6 274 60.9
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 7.0e-64 248.4 325 49.5
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.2e-63 247.7 300 52.7
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 2.7e-63 246.5 289 55.7
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 1.0e-62 244.6 327 50.2
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.3e-62 244.2 255 64.3
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 3.9e-62 242.7 305 51.1
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 5.6e-61 238.8 185 71.4
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 4.0e-59 232.6 289 54.7
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 8.9e-59 231.5 319 51.4
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 2.9e-57 226.5 344 48.5
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 1.1e-56 224.6 282 52.1
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 1.4e-56 224.2 307 52.1
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 9.2e-56 221.5 243 55.6
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 3.5e-55 219.5 261 57.5
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 3.5e-55 219.5 262 55.7
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 5.6e-53 212.2 239 58.2
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 3.6e-52 209.5 285 51.6
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 8.1e-52 208.4 249 56.2
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.1e-51 208.0 350 49.7
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.8e-51 207.2 245 52.2
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 3.1e-51 206.5 303 48.2
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 3.1e-51 206.5 254 54.7
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 4.0e-51 206.1 252 54.8
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 5.2e-51 205.7 254 54.7
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 5.2e-51 205.7 254 54.7
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 6.8e-51 205.3 324 45.4
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 1.5e-50 204.1 254 54.3
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 1.5e-50 204.1 263 52.5
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.0e-50 203.8 244 59.0
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 2.6e-50 203.4 312 48.1
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 4.4e-50 202.6 226 57.1
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 7.5e-50 201.8 254 53.5
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 7.5e-50 201.8 301 49.8
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 1.3e-49 201.1 248 54.4
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 2.2e-49 200.3 259 54.1
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 3.7e-49 199.5 247 54.7
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 4.9e-49 199.1 261 52.1
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.1e-48 198.0 327 47.7
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 1.9e-48 197.2 323 45.5
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 1.2e-47 194.5 330 44.5
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 4.6e-47 192.6 254 53.9
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 7.8e-47 191.8 312 42.9
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 1.3e-46 191.0 252 52.4
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 1.3e-46 191.0 283 47.0
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.7e-46 190.7 258 51.6
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 3.9e-46 189.5 249 53.8
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 5.1e-46 189.1 316 46.8
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 6.6e-46 188.7 313 45.7
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 1.1e-45 188.0 252 51.6
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 1.1e-45 188.0 252 51.6
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.1e-45 188.0 283 46.3
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 7.3e-45 185.3 243 49.0
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 2.1e-44 183.7 254 50.4
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 3.1e-43 179.9 293 47.1
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 5.2e-43 179.1 255 50.2
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 8.9e-43 178.3 284 46.5
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 1.5e-42 177.6 268 48.5
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 2.6e-42 176.8 282 46.1
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 7.6e-42 175.3 219 55.7
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 2.9e-41 173.3 300 44.3
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 4.9e-41 172.6 246 46.7
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 1.9e-40 170.6 282 44.7
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 4.6e-39 166.0 326 39.9
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 6.0e-39 165.6 163 62.6
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 9.6e-37 158.3 243 47.7
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 1.2e-36 157.9 210 51.4
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 3.8e-33 146.4 156 54.5
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 2.7e-31 140.2 291 40.2
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 2.7e-31 140.2 291 39.9
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 3.5e-31 139.8 110 70.0
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 4.6e-31 139.4 117 65.8
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 1.3e-30 137.9 291 40.2
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 2.3e-30 137.1 291 40.2
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 2.5e-29 133.7 270 40.0
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 7.3e-29 132.1 237 42.6
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 1.5e-26 124.4 298 37.2
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 1.1e-24 118.2 144 51.4
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 3.2e-24 116.7 168 48.8
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 6.6e-22 109.0 230 38.3
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 9.3e-16 88.6 64 70.3
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 8.7e-14 82.0 66 71.2
Sed0005383 Sechium edule HOM05D004418 ORTHO05D005222 1.6e-07 61.2 218 28.9


User provided reference genes

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