Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 5.4e-162 574.3 300 100.0
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 8.4e-147 523.9 304 91.1
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 1.6e-145 519.6 281 91.8
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 7.8e-145 517.3 303 89.8
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 1.3e-144 516.5 307 87.9
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 1.3e-144 516.5 282 92.2
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 8.6e-144 513.8 281 91.1
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 5.6e-143 511.1 303 86.8
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 5.2e-141 504.6 303 87.1
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 1.2e-140 503.4 300 85.0
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 1.2e-140 503.4 302 86.4
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 2.0e-140 502.7 282 88.7
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 2.6e-140 502.3 298 87.9
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 2.6e-140 502.3 300 85.7
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 4.4e-140 501.5 304 87.2
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 7.6e-140 500.7 298 87.9
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 2.9e-139 498.8 298 84.2
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 2.9e-139 498.8 300 83.7
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 8.4e-139 497.3 279 88.2
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 8.4e-139 497.3 279 88.2
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 8.4e-139 497.3 279 88.2
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 8.4e-139 497.3 279 88.2
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 8.4e-139 497.3 302 84.4
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 1.1e-138 496.9 300 86.3
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 1.4e-138 496.5 300 84.3
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 1.4e-138 496.5 300 83.3
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 1.4e-138 496.5 300 82.0
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 1.9e-138 496.1 300 85.0
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 2.4e-138 495.7 300 82.3
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 4.2e-138 495.0 282 88.3
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 5.4e-138 494.6 281 86.5
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 5.4e-138 494.6 282 87.2
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 9.3e-138 493.8 302 83.4
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.2e-137 493.4 300 85.7
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 1.6e-137 493.0 300 82.3
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 1.6e-137 493.0 281 86.1
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.6e-137 493.0 301 86.7
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.6e-137 493.0 282 86.2
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 2.7e-137 492.3 300 85.3
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 4.6e-137 491.5 279 86.7
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 6.0e-137 491.1 300 82.3
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 6.0e-137 491.1 300 84.0
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 1.3e-136 490.0 302 81.8
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 1.7e-136 489.6 296 83.4
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 2.3e-136 489.2 300 83.3
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 2.3e-136 489.2 300 82.7
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 3.0e-136 488.8 300 84.7
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 3.0e-136 488.8 281 86.1
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 3.0e-136 488.8 300 80.7
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 3.9e-136 488.4 294 83.7
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 3.9e-136 488.4 300 85.0
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 3.9e-136 488.4 286 86.0
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 3.9e-136 488.4 300 82.0
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 5.1e-136 488.0 300 84.0
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 6.6e-136 487.6 300 85.0
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.1e-135 486.9 283 85.2
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.1e-135 486.9 300 82.7
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.9e-135 486.1 281 84.7
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 2.5e-135 485.7 300 81.0
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 5.6e-135 484.6 284 84.9
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 7.3e-135 484.2 294 82.7
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 7.3e-135 484.2 282 85.8
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 9.6e-135 483.8 304 81.9
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 1.3e-134 483.4 300 83.3
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.3e-134 483.4 282 84.4
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 1.6e-134 483.0 302 79.5
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 2.1e-134 482.6 281 84.3
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 2.8e-134 482.3 300 84.0
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 2.8e-134 482.3 280 83.9
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.6e-134 481.9 279 84.6
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 4.8e-134 481.5 285 83.9
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 4.8e-134 481.5 282 84.4
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 4.8e-134 481.5 300 82.3
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 4.8e-134 481.5 300 82.7
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 6.2e-134 481.1 282 84.4
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 1.4e-133 479.9 295 81.7
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 3.1e-133 478.8 300 80.3
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 4.0e-133 478.4 303 79.9
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 6.9e-133 477.6 300 79.7
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 1.2e-132 476.9 275 87.3
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 3.4e-132 475.3 312 79.2
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 4.4e-132 474.9 282 83.3
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 5.8e-132 474.6 280 84.3
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 9.9e-132 473.8 302 78.5
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 9.9e-132 473.8 284 83.5
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 2.9e-131 472.2 280 84.6
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 3.8e-131 471.9 282 83.3
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 6.4e-131 471.1 282 83.3
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 6.4e-131 471.1 282 84.4
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 8.4e-131 470.7 280 83.6
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 2.4e-130 469.2 282 84.0
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 7.1e-130 467.6 283 82.0
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 2.1e-129 466.1 302 79.1
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 7.9e-129 464.2 278 82.7
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 1.0e-128 463.8 265 85.7
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 1.0e-128 463.8 280 82.9
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.3e-128 463.4 283 82.0
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 1.3e-128 463.4 284 81.0
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 3.0e-128 462.2 281 81.5
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 3.9e-128 461.8 284 80.6
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 5.1e-128 461.5 300 78.3
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 1.5e-127 459.9 298 77.5
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 3.3e-127 458.8 304 78.9
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 1.6e-126 456.4 281 82.9
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 2.1e-126 456.1 281 82.6
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 6.2e-126 454.5 286 78.7
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 5.3e-125 451.4 313 75.7
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 6.9e-125 451.1 282 81.2
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 1.2e-124 450.3 284 81.3
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 5.8e-124 448.0 301 81.7
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 5.8e-124 448.0 279 80.6
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 6.4e-123 444.5 280 79.3
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 1.4e-122 443.4 300 75.7
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 3.2e-122 442.2 311 73.3
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 2.1e-121 439.5 328 73.5
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 2.3e-120 436.0 282 77.3
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 3.0e-120 435.6 283 78.1
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 3.9e-120 435.3 264 81.4
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 3.3e-119 432.2 364 65.9
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 6.2e-118 427.9 291 75.9
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.8e-117 426.4 255 83.1
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 5.3e-117 424.9 218 96.3
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 5.3e-117 424.9 218 96.3
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.2e-116 423.7 253 83.0
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 6.5e-115 417.9 263 78.7
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 7.9e-113 411.0 281 77.2
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 5.7e-111 404.8 221 89.6
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 7.4e-111 404.4 278 70.1
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 1.4e-109 400.2 221 87.8
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 3.4e-108 395.6 252 78.2
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 2.5e-106 389.4 250 75.6
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 7.9e-105 384.4 251 74.9
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 3.0e-104 382.5 254 72.0
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 2.2e-99 366.3 200 89.5
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 1.1e-98 364.0 214 83.6
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 1.9e-98 363.2 253 69.6
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.1e-95 354.0 290 66.2
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 4.1e-93 345.5 215 80.9
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 5.0e-91 338.6 182 92.9
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 6.5e-91 338.2 182 90.7
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 4.4e-87 325.5 208 79.8
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 4.2e-82 308.9 174 88.5
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 4.4e-79 298.9 181 80.1
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 8.2e-78 294.7 221 74.2
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 6.1e-73 278.5 152 90.1
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 5.0e-67 258.8 194 68.0
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 6.3e-62 241.9 146 82.2
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 3.5e-60 236.1 209 63.6
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 2.1e-49 200.3 236 50.4
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 3.4e-47 193.0 119 76.5
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 4.9e-46 189.1 158 63.9
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 1.1e-45 188.0 136 72.8
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 3.3e-42 176.4 180 57.2
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 1.8e-40 170.6 105 77.1
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 2.3e-35 153.7 86 82.6
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 8.6e-35 151.8 96 75.0
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 2.2e-30 137.1 305 34.8
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 3.2e-29 133.3 196 44.9
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 1.6e-28 131.0 99 70.7
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.5e-28 129.8 88 71.6
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 1.6e-25 120.9 66 90.9
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 1.6e-25 120.9 66 90.9
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 8.1e-25 118.6 170 42.9
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 9.3e-21 105.1 88 81.8
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 9.3e-21 105.1 88 81.8
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 6.9e-16 89.0 53 77.4
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 1.5e-15 87.8 158 38.6
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 9.9e-15 85.1 85 54.1
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 1.9e-13 80.9 79 54.4
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 1.2e-12 78.2 84 52.4
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 4.6e-12 76.3 63 60.3
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 1.8e-11 74.3 110 41.8
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 6.7e-11 72.4 79 67.1
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 8.7e-11 72.0 95 45.3
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 2.1e-09 67.4 44 77.3
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.5e-07 61.2 34 82.4
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 1.5e-07 61.2 43 74.4
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 2.0e-07 60.8 40 75.0
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 2.6e-07 60.5 57 52.6
Lj2g0024488 Lotus japonicus HOM05D003815 ORTHO05D004580 6.4e-06 55.8 38 73.7


User provided reference genes

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