Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 2.0e-146 523.1 411 100.0
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 4.1e-104 382.5 325 91.4
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 2.6e-98 363.2 373 86.1
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 3.6e-92 342.8 330 84.5
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 1.5e-90 337.4 377 78.5
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 2.6e-90 336.7 329 83.9
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 2.2e-89 333.6 328 82.6
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 3.7e-89 332.8 329 83.6
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 1.1e-88 331.3 327 81.7
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 1.2e-87 327.8 319 85.0
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 7.8e-87 325.1 326 82.8
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 1.3e-86 324.3 326 83.1
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 1.1e-85 321.2 326 83.4
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 5.2e-83 312.4 320 82.8
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 1.5e-82 310.8 330 78.8
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 9.9e-82 308.1 330 81.2
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 6.4e-81 305.4 330 79.4
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 9.2e-80 301.6 330 78.2
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 4.6e-79 299.3 320 81.2
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 6.0e-79 298.9 335 76.7
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 7.8e-79 298.5 308 83.1
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 1.3e-78 297.7 326 77.6
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 1.3e-78 297.7 382 73.0
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 1.3e-78 297.7 322 80.7
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 3.0e-78 296.6 331 76.4
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 3.9e-78 296.2 337 74.5
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.9e-77 293.9 342 75.4
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 2.5e-77 293.5 327 76.1
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 7.3e-77 292.0 327 75.5
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 1.2e-76 291.2 320 75.0
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 2.8e-76 290.0 392 72.4
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 3.6e-76 289.7 331 74.9
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 4.0e-75 286.2 326 73.3
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 6.8e-75 285.4 320 74.7
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 1.2e-74 284.6 392 73.0
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 2.6e-74 283.5 329 76.9
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 5.8e-74 282.3 325 73.2
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 7.6e-74 282.0 331 74.9
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 1.3e-73 281.2 320 77.8
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 1.7e-73 280.8 330 74.5
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.7e-73 280.8 327 74.3
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 2.2e-73 280.4 327 74.3
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.2e-73 280.4 327 74.3
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 2.2e-73 280.4 326 76.4
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.9e-73 279.3 320 77.8
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 6.4e-73 278.9 330 74.8
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.1e-72 278.1 326 73.6
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 1.1e-72 278.1 343 70.6
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 1.9e-72 277.3 332 70.5
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.4e-72 276.9 327 74.0
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 3.2e-72 276.6 319 74.3
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 7.1e-72 275.4 324 73.1
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 7.1e-72 275.4 327 75.2
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.6e-71 274.2 326 75.2
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 2.1e-71 273.9 327 75.5
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 1.0e-70 271.6 327 74.6
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 2.3e-70 270.4 332 72.0
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 3.0e-70 270.0 327 72.5
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 6.6e-70 268.9 378 73.8
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 6.6e-70 268.9 327 74.3
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 2.5e-69 266.9 324 74.7
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 3.3e-69 266.5 324 74.7
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 3.3e-69 266.5 378 65.1
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 4.3e-69 266.2 326 74.5
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 3.6e-68 263.1 382 67.8
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 4.8e-68 262.7 327 72.2
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.8e-67 260.8 377 68.7
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 1.8e-67 260.8 333 69.4
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 1.8e-67 260.8 330 71.5
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 2.4e-67 260.4 320 77.2
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 2.4e-67 260.4 328 74.1
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 3.1e-67 260.0 329 73.6
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 3.1e-67 260.0 320 75.0
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 4.0e-67 259.6 321 74.8
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 6.9e-67 258.8 321 74.1
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.6e-66 256.9 377 67.6
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 3.4e-66 256.5 329 72.9
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 5.8e-66 255.8 382 64.4
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.3e-65 254.6 327 70.3
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 2.9e-65 253.4 376 64.9
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 8.4e-65 251.9 333 68.8
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 2.4e-64 250.4 319 74.9
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 4.2e-64 249.6 330 68.5
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 4.2e-64 249.6 332 71.4
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 1.2e-63 248.1 328 69.5
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 2.7e-63 246.9 322 72.0
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 2.7e-63 246.9 186 67.2
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.7e-62 244.2 328 69.8
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 2.3e-62 243.8 319 70.2
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 8.7e-62 241.9 319 69.6
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 1.1e-61 241.5 371 69.5
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 1.9e-61 240.7 333 68.8
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 5.6e-61 239.2 330 69.4
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 1.6e-60 237.7 319 69.0
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 2.1e-60 237.3 321 68.2
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 1.1e-59 235.0 331 67.1
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.4e-59 234.6 321 68.8
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 5.8e-58 229.2 320 68.4
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 4.9e-57 226.1 317 67.5
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 4.9e-57 226.1 336 68.2
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 1.4e-56 224.6 299 71.9
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 1.6e-55 221.1 318 67.6
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 4.6e-55 219.5 325 65.2
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.0e-54 218.4 323 67.8
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 8.7e-54 215.3 319 68.3
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 1.6e-52 211.1 388 65.7
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 1.4e-51 208.0 334 64.4
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 2.4e-51 207.2 254 83.5
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 2.6e-50 203.8 340 64.4
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 2.6e-50 203.8 335 66.9
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 1.0e-49 201.8 340 65.9
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.3e-49 201.4 340 63.8
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 3.8e-49 199.9 389 63.8
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 4.9e-49 199.5 340 65.3
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 6.5e-49 199.1 376 67.6
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 8.4e-49 198.7 336 63.1
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 1.1e-48 198.4 389 61.7
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 1.9e-48 197.6 219 93.6
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 3.2e-48 196.8 389 63.0
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 3.2e-48 196.8 389 63.0
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 3.2e-48 196.8 389 63.0
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 1.2e-47 194.9 348 43.4
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 4.6e-47 193.0 322 64.9
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 4.6e-47 193.0 386 63.5
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 3.0e-46 190.3 326 66.0
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 3.0e-46 190.3 379 64.1
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 3.0e-46 190.3 379 64.4
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 1.8e-43 181.0 270 69.6
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 3.4e-42 176.8 321 65.4
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 5.9e-42 176.0 272 68.4
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 3.8e-41 173.3 368 57.6
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 3.5e-39 166.8 196 51.5
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 6.1e-39 166.0 328 64.0
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 6.1e-39 166.0 328 64.0
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 7.9e-39 165.6 328 63.7
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 1.0e-38 165.2 379 58.0
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 3.9e-38 163.3 193 49.7
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 1.9e-37 161.0 326 60.7
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 3.3e-37 160.2 322 64.3
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 1.6e-36 157.9 170 51.8
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 6.3e-36 156.0 340 56.2
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 9.0e-35 152.1 337 61.7
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 5.9e-34 149.4 122 62.3
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 2.9e-33 147.1 313 62.9
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 6.5e-33 146.0 335 60.6
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 8.5e-33 145.6 337 61.1
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 4.6e-31 139.8 305 54.4
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.8e-30 137.9 269 66.5
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 1.5e-29 134.8 120 61.7
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 3.3e-29 133.7 331 38.7
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 2.2e-28 131.0 375 52.0
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 4.1e-27 126.7 202 41.1
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 7.7e-26 122.5 196 38.8
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 3.8e-25 120.2 211 73.5
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 2.7e-23 114.0 334 52.7
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 2.2e-17 94.4 182 81.9
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 2.1e-15 87.8 189 32.8
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 2.1e-15 87.8 170 39.4
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 2.1e-15 87.8 185 75.7
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 5.7e-13 79.7 55 67.3
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 8.2e-12 75.9 188 67.6
Pp3c14_13680 Physcomitrium patens HOM05D004193 ORTHO05D004862 8.2e-12 75.9 156 33.3
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 2.4e-11 74.3 54 63.0
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.2e-10 72.0 87 49.4
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 2.0e-10 71.2 55 60.0
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.7e-10 70.9 48 64.6
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 5.9e-10 69.7 50 72.0
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 3.6e-07 60.5 52 53.8
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 3.0e-06 57.4 52 53.8
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 5.2e-06 56.6 43 55.8
AL2G35820 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 6.8e-06 56.2 46 60.9
AL6G39660 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 6.8e-06 56.2 46 60.9
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 6.8e-06 56.2 47 53.2


User provided reference genes

Program Settings