Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 1.5e-113 412.9 213 100.0
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 5.6e-89 331.3 215 81.4
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 1.4e-87 326.6 213 78.9
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 2.4e-87 325.9 213 76.5
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 2.4e-87 325.9 213 76.5
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 1.4e-68 263.5 214 64.0
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 2.8e-64 249.2 215 60.9
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 8.2e-64 247.7 215 61.9
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 3.1e-63 245.7 215 60.9
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 1.4e-55 220.3 213 53.5
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 4.1e-55 218.8 213 52.6
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 5.9e-54 214.9 199 57.3
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 8.2e-48 194.5 200 53.5
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 1.3e-45 187.2 211 48.8
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 5.0e-45 185.3 198 51.0
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 6.5e-45 184.9 200 49.5
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 8.5e-45 184.5 194 51.0
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 4.2e-44 182.2 207 48.3
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 9.4e-44 181.0 214 46.3
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 4.7e-43 178.7 201 48.3
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 6.1e-43 178.3 194 49.5
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 1.4e-42 177.2 181 53.0
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 1.8e-42 176.8 177 52.0
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 2.3e-42 176.4 203 49.8
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 2.3e-42 176.4 194 49.5
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 4.0e-42 175.6 201 46.3
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 1.2e-41 174.1 212 42.5
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 2.0e-41 173.3 208 47.6
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 2.6e-41 172.9 182 50.0
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 4.4e-41 172.2 188 48.4
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 4.4e-41 172.2 215 43.7
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 4.4e-41 172.2 191 49.7
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 5.7e-41 171.8 210 45.2
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 5.7e-41 171.8 182 49.5
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 5.7e-41 171.8 200 46.5
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 5.7e-41 171.8 205 49.8
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 7.5e-41 171.4 194 47.9
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 9.8e-41 171.0 207 45.9
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 9.8e-41 171.0 182 49.5
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 1.7e-40 170.2 200 45.5
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 2.8e-40 169.5 203 45.8
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 2.8e-40 169.5 185 49.7
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 2.8e-40 169.5 185 47.0
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 3.7e-40 169.1 181 50.3
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 1.1e-39 167.5 195 49.2
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 5.4e-39 165.2 210 45.7
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 7.0e-39 164.9 200 45.0
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 9.1e-39 164.5 203 45.3
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 1.2e-38 164.1 193 46.1
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 1.2e-38 164.1 196 47.4
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 1.2e-38 164.1 190 44.7
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 1.7e-37 160.2 200 45.5
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 5.0e-37 158.7 202 45.0
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 8.5e-37 157.9 189 44.4
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 1.1e-36 157.5 207 44.4
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 1.5e-36 157.1 196 45.4
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 5.5e-36 155.2 197 46.2
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 2.1e-35 153.3 195 44.6
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 3.6e-35 152.5 208 45.2
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 3.6e-35 152.5 208 44.2
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 3.6e-35 152.5 202 43.6
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 4.7e-35 152.1 181 47.5
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 6.1e-35 151.8 205 45.4
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 1.0e-34 151.0 199 44.2
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 1.0e-34 151.0 212 42.9
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 1.0e-34 151.0 199 43.7
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 2.3e-34 149.8 196 43.4
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 3.0e-34 149.4 212 42.5
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 8.8e-34 147.9 198 41.4
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 1.2e-33 147.5 211 44.5
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 3.4e-33 146.0 215 43.7
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 3.4e-33 146.0 217 39.2
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 4.4e-33 145.6 213 40.8
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 5.7e-33 145.2 197 44.7
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 9.8e-33 144.4 218 42.2
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 1.4e-31 140.6 170 45.9
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 3.1e-31 139.4 170 45.3
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 2.7e-30 136.3 202 42.6
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 4.5e-30 135.6 209 36.4
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 7.7e-30 134.8 188 44.1
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 2.3e-29 133.3 212 34.4
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 2.3e-29 133.3 205 41.5
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 8.6e-29 131.3 202 36.6
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 8.6e-29 131.3 192 41.7
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 1.1e-28 131.0 203 36.0
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 1.1e-28 131.0 210 33.8
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 1.5e-28 130.6 287 32.8
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 3.3e-28 129.4 203 35.5
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 3.3e-28 129.4 203 35.5
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 4.3e-28 129.0 210 35.2
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 4.3e-28 129.0 202 37.1
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 7.3e-28 128.3 203 36.0
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 1.2e-27 127.5 175 41.1
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 4.7e-27 125.6 210 34.3
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 4.7e-27 125.6 177 36.2
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 1.8e-26 123.6 203 36.0
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 2.0e-25 120.2 123 49.6
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 3.7e-24 115.9 218 37.6
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 1.8e-23 113.6 190 37.4
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 3.5e-22 109.4 107 47.7
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 1.9e-20 103.6 153 42.5
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 5.6e-20 102.1 109 45.9
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 7.3e-20 101.7 217 30.9
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 2.1e-19 100.1 152 41.4
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 8.9e-18 94.7 107 45.8
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 1.5e-17 94.0 119 42.0
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 7.5e-17 91.7 78 57.7
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 9.8e-17 91.3 177 34.5
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 6.4e-16 88.6 87 44.8
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 8.3e-16 88.2 181 33.1
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 3.0e-13 79.7 210 29.5
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 1.1e-12 77.8 210 30.0
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 1.5e-12 77.4 154 32.5
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 1.2e-11 74.3 128 35.9
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 5.2e-10 68.9 98 38.8
Haze_05450 Corylus avellana HOM05D006968 ORTHO05D164033 7.1e-07 58.5 50 52.0


User provided reference genes

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