Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4408 Trifolium pratense HOM05D004894 ORTHO05D005689 4.5e-92 341.3 176 100.0
TPR.G36348 Trifolium pratense HOM05D004894 ORTHO05D005689 6.4e-54 214.5 178 62.9
TPR.G28009 Trifolium pratense HOM05D004894 ORTHO05D005689 4.1e-37 158.7 176 50.0
Medtr6g037680 Medicago truncatula HOM05D004894 ORTHO05D005689 9.2e-37 157.5 179 50.8
Medtr6g037940 Medicago truncatula HOM05D004894 ORTHO05D005689 4.6e-36 155.2 172 48.8
Psat4g130720 Pisum sativum HOM05D004894 ORTHO05D005689 3.6e-33 145.6 159 45.3
Medtr6g037700 Medicago truncatula HOM05D004894 ORTHO05D005689 1.3e-30 137.1 173 48.0
Medtr6g037710 Medicago truncatula HOM05D004894 ORTHO05D005689 1.3e-30 137.1 181 47.5
Psat1g101000 Pisum sativum HOM05D004894 ORTHO05D005689 6.4e-30 134.8 176 44.3
Medtr6g037920 Medicago truncatula HOM05D004894 ORTHO05D005689 1.0e-27 127.5 166 42.8
TPR.G295 Trifolium pratense HOM05D004894 ORTHO05D412355 9.6e-26 120.9 64 96.9
TPR.G36349 Trifolium pratense HOM05D004894 ORTHO05D005689 2.8e-25 119.4 168 42.3
Psat1g101040 Pisum sativum HOM05D004894 ORTHO05D005689 2.4e-24 116.3 174 39.7
Medtr6g037780 Medicago truncatula HOM05D004894 ORTHO05D005689 5.8e-23 111.7 179 39.7
TPR.G28007 Trifolium pratense HOM05D004894 ORTHO05D005689 1.7e-22 110.2 169 34.9
Medtr6g039260 Medicago truncatula HOM05D004894 ORTHO05D005689 1.4e-21 107.1 171 39.8
Medtr4g062290 Medicago truncatula HOM05D004894 ORTHO05D005689 1.9e-21 106.7 167 37.7
Medtr6g034800 Medicago truncatula HOM05D004894 ORTHO05D005689 2.4e-21 106.3 172 39.5
Medtr6g037880 Medicago truncatula HOM05D004894 ORTHO05D005689 1.6e-20 103.6 171 39.2
Medtr6g037820 Medicago truncatula HOM05D004894 ORTHO05D005689 2.1e-20 103.2 180 40.0
Psat7g222760 Pisum sativum HOM05D004894 ORTHO05D005689 2.1e-20 103.2 167 36.5
Medtr6g034580 Medicago truncatula HOM05D004894 ORTHO05D005689 3.0e-19 99.4 172 33.7
arahy.Tifrunner.gnm1.ann1.VH20NJ Arachis hypogaea HOM05D004894 ORTHO05D005689 6.6e-19 98.2 168 32.7
Medtr4g065770 Medicago truncatula HOM05D004894 ORTHO05D005689 6.6e-19 98.2 170 34.7
Lalb_Chr03g0035451 Lupinus albus HOM05D004894 ORTHO05D005689 1.1e-18 97.4 154 33.1
Lalb_Chr14g0362611 Lupinus albus HOM05D004894 ORTHO05D005689 1.5e-18 97.1 172 32.6
Medtr6g037800 Medicago truncatula HOM05D004894 ORTHO05D005689 1.5e-18 97.1 154 37.7
TPR.G12635 Trifolium pratense HOM05D004894 ORTHO05D005689 2.5e-18 96.3 170 38.2
Lalb_Chr03g0035561 Lupinus albus HOM05D004894 ORTHO05D005689 4.3e-18 95.5 173 30.6
VMungo0464G0707 Vigna mungo HOM05D004894 ORTHO05D005689 7.3e-18 94.7 172 34.3
Lalb_Chr19g0130151 Lupinus albus HOM05D004894 ORTHO05D005689 1.3e-17 94.0 173 32.9
Lalb_Chr19g0130161 Lupinus albus HOM05D004894 ORTHO05D005689 1.3e-17 94.0 173 32.9
Lalb_Chr03g0035461 Lupinus albus HOM05D004894 ORTHO05D005689 2.1e-17 93.2 170 30.6
Glyma.10G223000 Glycine max HOM05D004894 ORTHO05D005689 1.5e-15 87.0 141 36.2
Lalb_Chr19g0130061 Lupinus albus HOM05D004894 ORTHO05D005689 1.5e-15 87.0 175 36.0
TPR.G12614 Trifolium pratense HOM05D004894 ORTHO05D005689 2.6e-15 86.3 149 33.6
Medtr6g038010 Medicago truncatula HOM05D004894 ORTHO05D005689 3.4e-15 85.9 174 32.2
TPR.G14508 Trifolium pratense HOM05D004894 ORTHO05D005689 3.4e-15 85.9 172 33.1
Glyma.16G164600 Glycine max HOM05D004894 ORTHO05D005689 1.3e-14 84.0 172 29.1
Glyma.10G223100 Glycine max HOM05D004894 ORTHO05D005689 1.7e-14 83.6 139 33.1
Lj5g0011961 Lotus japonicus HOM05D004894 ORTHO05D005689 1.7e-14 83.6 177 29.9
RcHm_v2.0_Chr6g0274541 Rosa chinensis HOM05D004894 ORTHO05D009560 1.7e-14 83.6 172 34.3
Glyma.02G080000 Glycine max HOM05D004894 ORTHO05D005689 6.4e-14 81.6 174 29.3
Lj2g0017521 Lotus japonicus HOM05D004894 ORTHO05D005689 1.1e-13 80.9 163 28.2
Lalb_Chr19g0130051 Lupinus albus HOM05D004894 ORTHO05D005689 3.2e-13 79.3 154 31.2
Lalb_Chr19g0130071 Lupinus albus HOM05D004894 ORTHO05D005689 3.2e-13 79.3 154 31.2
Ca_10673_v3 Cicer arietinum L. HOM05D004894 ORTHO05D005689 5.4e-13 78.6 142 33.1
TPR.G9011 Trifolium pratense HOM05D004894 ORTHO05D005689 1.6e-12 77.0 169 29.6
Phvul.007G082100 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 2.1e-12 76.6 166 30.7
Psat7g222800 Pisum sativum HOM05D004894 ORTHO05D005689 2.7e-12 76.3 104 37.5
Glyma.02G262700 Glycine max HOM05D004894 ORTHO05D005689 6.0e-12 75.1 144 32.6
Psat6g191360 Pisum sativum HOM05D004894 ORTHO05D005689 1.3e-11 73.9 145 31.0
Psat6g191520 Pisum sativum HOM05D004894 ORTHO05D005689 1.3e-11 73.9 115 36.5
Psat6g191960 Pisum sativum HOM05D004894 ORTHO05D005689 1.3e-11 73.9 115 36.5
TPR.G21506 Trifolium pratense HOM05D004894 ORTHO05D005689 1.3e-11 73.9 178 30.3
Glyma.02G262600 Glycine max HOM05D004894 ORTHO05D005689 1.8e-11 73.6 144 32.6
Glyma.02G262800 Glycine max HOM05D004894 ORTHO05D005689 1.8e-11 73.6 144 32.6
Glyma.02G262900 Glycine max HOM05D004894 ORTHO05D005689 1.8e-11 73.6 144 32.6
Glyma.02G263000 Glycine max HOM05D004894 ORTHO05D005689 1.8e-11 73.6 144 32.6
TPR.G36147 Trifolium pratense HOM05D004894 ORTHO05D005689 1.8e-11 73.6 179 30.2
Glyma.02G263100 Glycine max HOM05D004894 ORTHO05D005689 3.9e-11 72.4 144 31.9
Psat6g191440 Pisum sativum HOM05D004894 ORTHO05D005689 6.7e-11 71.6 115 34.8
Psat3g039600 Pisum sativum HOM05D004894 ORTHO05D005689 1.5e-10 70.5 154 28.6
TPR.G30770 Trifolium pratense HOM05D004894 ORTHO05D005689 1.9e-10 70.1 160 31.2
MD10G1032600 Malus domestica HOM05D004894 ORTHO05D005689 2.5e-10 69.7 140 32.9
Psat0s6062g0040 Pisum sativum HOM05D004894 ORTHO05D005689 2.5e-10 69.7 178 27.0
arahy.Tifrunner.gnm1.ann1.P5DTJP Arachis hypogaea HOM05D004894 ORTHO05D005689 3.3e-10 69.3 150 29.3
Prupe.8G038100 Prunus persica HOM05D004894 ORTHO05D005689 4.3e-10 68.9 147 32.0
TPR.G36461 Trifolium pratense HOM05D004894 ORTHO05D005689 7.4e-10 68.2 110 34.5
Phvul.008G271200 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 1.6e-09 67.0 180 27.8
MD10G1032700 Malus domestica HOM05D004894 ORTHO05D005689 2.1e-09 66.6 150 32.7
Lalb_Chr03g0035441 Lupinus albus HOM05D004894 ORTHO05D005689 8.1e-09 64.7 173 30.1
TPR.G30772 Trifolium pratense HOM05D004894 ORTHO05D005689 8.1e-09 64.7 182 28.6
MD10G1032400 Malus domestica HOM05D004894 ORTHO05D005689 1.1e-08 64.3 115 35.7
Medtr5g081840 Medicago truncatula HOM05D004894 ORTHO05D005689 4.0e-08 62.4 172 29.7
Psat6g191560 Pisum sativum HOM05D004894 ORTHO05D005689 4.0e-08 62.4 104 34.6
arahy.Tifrunner.gnm1.ann1.56TCJ2 Arachis hypogaea HOM05D004894 ORTHO05D005689 5.3e-08 62.0 131 26.7
Lalb_Chr03g0035431 Lupinus albus HOM05D004894 ORTHO05D005689 5.3e-08 62.0 171 29.8
FAN24G3270 Fragaria x ananassa HOM05D004894 ORTHO05D005689 6.9e-08 61.6 138 34.1
Medtr1g098410 Medicago truncatula HOM05D004894 ORTHO05D005689 6.9e-08 61.6 145 26.2
TPR.G11233 Trifolium pratense HOM05D004894 ORTHO05D005689 6.9e-08 61.6 178 29.8
Medtr1g054740 Medicago truncatula HOM05D004894 ORTHO05D005689 9.0e-08 61.2 176 29.0
FvH4_2g13220 Fragaria vesca HOM05D004894 ORTHO05D005689 2.0e-07 60.1 138 33.3
Lalb_Chr03g0035421 Lupinus albus HOM05D004894 ORTHO05D005689 2.0e-07 60.1 171 29.2
TPR.G22347 Trifolium pratense HOM05D004894 ORTHO05D005689 2.6e-07 59.7 175 25.1
Psat6g191480 Pisum sativum HOM05D004894 ORTHO05D005689 9.9e-07 57.8 104 32.7
Medtr1g098200 Medicago truncatula HOM05D004894 ORTHO05D005689 1.3e-06 57.4 145 26.2
Medtr1g098400 Medicago truncatula HOM05D004894 ORTHO05D005689 1.3e-06 57.4 145 26.2
TPR.G30777 Trifolium pratense HOM05D004894 ORTHO05D005689 1.3e-06 57.4 169 28.4
Medtr5g081820 Medicago truncatula HOM05D004894 ORTHO05D005689 2.2e-06 56.6 167 28.7
Lalb_Chr19g0125751 Lupinus albus HOM05D067330 ORTHO05D005689 4.9e-06 55.5 183 28.4
FAN27G2788 Fragaria x ananassa HOM05D004894 ORTHO05D009560 6.4e-06 55.1 133 30.8


User provided reference genes

Program Settings