Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4387 Trifolium pratense HOM05D005522 ORTHO05D007414 6.1e-166 587.4 297 100.0
Medtr1g050360 Medicago truncatula HOM05D005522 ORTHO05D007414 1.3e-139 500.0 365 73.2
Psat6g119360 Pisum sativum HOM05D005522 ORTHO05D007414 1.6e-137 493.0 363 72.7
Ca_21519_v3 Cicer arietinum L. HOM05D005522 ORTHO05D007414 1.7e-136 489.6 362 71.0
Lalb_Chr02g0156511 Lupinus albus HOM05D005522 ORTHO05D007414 2.4e-122 442.6 369 64.8
Phvul.007G247900 Phaseolus vulgaris HOM05D005522 ORTHO05D007414 3.5e-121 438.7 362 66.0
Lj5g0015939 Lotus japonicus HOM05D005522 ORTHO05D007414 6.0e-121 438.0 373 63.8
VMungo0720G1534 Vigna mungo HOM05D005522 ORTHO05D007414 4.7e-118 428.3 362 63.8
Glyma.02G166300 Glycine max HOM05D005522 ORTHO05D007414 3.7e-115 418.7 362 64.4
Glyma.10G104100 Glycine max HOM05D005522 ORTHO05D007414 1.4e-114 416.8 362 64.1
Manes.08G056700 Manihot esculenta HOM05D005522 ORTHO05D007414 1.1e-111 407.1 375 58.9
CiPaw.10G038000 Carya illinoinensis HOM05D005522 ORTHO05D007414 2.5e-111 406.0 366 61.2
CANSAT80G0471 Cannabis sativa HOM05D005522 ORTHO05D007414 4.3e-111 405.2 362 60.8
Potri.016G040300 Populus trichocarpa HOM05D005522 ORTHO05D007414 5.6e-111 404.8 367 59.7
TAR171G0004 Trochodendron aralioides HOM05D005522 ORTHO05D007414 1.6e-110 403.3 371 59.3
FvH4_6g25110 Fragaria vesca HOM05D005522 ORTHO05D007414 3.6e-110 402.1 361 60.7
FAN14G2465 Fragaria x ananassa HOM05D005522 ORTHO05D007414 3.6e-110 402.1 361 60.7
RcHm_v2.0_Chr2g0124941 Rosa chinensis HOM05D005522 ORTHO05D007414 6.2e-110 401.4 309 67.3
FAN02G3261 Fragaria x ananassa HOM05D005522 ORTHO05D007414 1.1e-109 400.6 361 60.4
MD00G1074000 Malus domestica HOM05D005522 ORTHO05D007414 1.4e-109 400.2 376 59.8
Haze_19737 Corylus avellana HOM05D005522 ORTHO05D007414 2.4e-109 399.4 363 62.0
Cfa016729 Carpinus fangiana HOM05D005522 ORTHO05D007414 3.1e-109 399.1 366 62.0
Ciclev10004603m.g Citrus clementina HOM05D005522 ORTHO05D007414 3.1e-109 399.1 373 58.7
FAN05G4952 Fragaria x ananassa HOM05D005522 ORTHO05D007414 3.1e-109 399.1 361 60.7
CANSAT80G2685 Cannabis sativa HOM05D005522 ORTHO05D007414 5.2e-109 398.3 361 60.7
EL10Ac3g07189 Beta vulgaris HOM05D005522 ORTHO05D007414 1.2e-108 397.1 341 61.6
Prupe.7G046300 Prunus persica HOM05D005522 ORTHO05D007414 1.2e-108 397.1 367 60.5
Dinv04140 Davidia involucrata HOM05D005522 ORTHO05D007414 1.3e-107 393.7 382 58.9
ClCG04G004060 Citrullus lanatus HOM05D005522 ORTHO05D007414 2.2e-107 392.9 360 58.6
CsaV3_UNG143090 Cucumis sativus L. HOM05D005522 ORTHO05D007414 2.2e-107 392.9 326 62.3
Dinv18487 Davidia involucrata HOM05D005522 ORTHO05D007414 2.2e-107 392.9 372 58.6
Thecc.05G141500 Theobroma cacao HOM05D005522 ORTHO05D007414 2.9e-107 392.5 366 57.7
COL.COLO4_33937 Corchorus olitorius HOM05D005522 ORTHO05D007414 6.4e-107 391.3 362 58.3
Eucgr.A02267 Eucalyptus grandis HOM05D005522 ORTHO05D007414 8.4e-107 391.0 368 59.2
MELO3C020736.2 Cucumis melo HOM05D005522 ORTHO05D007414 1.4e-106 390.2 360 58.3
THA.LOC104816408 Tarenaya hassleriana HOM05D005522 ORTHO05D007414 1.4e-106 390.2 364 58.5
Ah.04g151150 Amaranthus hybridus HOM05D005522 ORTHO05D007414 3.2e-106 389.0 331 62.2
Duzib093G0281 Durio zibethinus HOM05D005522 ORTHO05D007414 4.2e-106 388.7 361 57.1
DCAR_020543 Daucus carota HOM05D005522 ORTHO05D007414 7.1e-106 387.9 375 57.6
CSS0038435 Camellia sinensis var. sinensis HOM05D005522 ORTHO05D007414 9.2e-106 387.5 338 61.2
Hma1.2p1_0056F.1_g031850 Hydrangea macrophylla HOM05D005522 ORTHO05D007414 2.1e-105 386.3 374 59.4
Aa31LG4G16570 Aethionema arabicum HOM05D005522 ORTHO05D007414 3.5e-105 385.6 371 58.2
Rhsim03G0034500 Rhododendron simsii HOM05D005522 ORTHO05D007414 1.3e-104 383.6 377 57.6
Hund24634 Selenicereus undatus HOM05D005522 ORTHO05D007414 1.3e-104 383.6 375 56.8
Cc06_g18590 Coffea canephora HOM05D005522 ORTHO05D007414 1.7e-104 383.3 380 55.5
Nitab4.5_0013059g0010 Nicotiana tabacum HOM05D005522 ORTHO05D007414 1.7e-104 383.3 365 58.9
RhsimUnG0217500 Rhododendron simsii HOM05D005522 ORTHO05D007414 1.7e-104 383.3 381 57.0
MSTRG.19821 Avicennia marina HOM05D005522 ORTHO05D007414 5.1e-104 381.7 369 58.5
BraA06t25053Z Brassica rapa HOM05D005522 ORTHO05D007414 8.7e-104 380.9 365 58.6
Thhalv10010214m.g Eutrema salsugineum HOM05D005522 ORTHO05D007414 8.7e-104 380.9 375 57.6
Lsat_1_v5_gn_5_159221 Lactuca sativa HOM05D005522 ORTHO05D007414 1.1e-103 380.6 379 55.7
Carub.0005s1405 Capsella rubella HOM05D005522 ORTHO05D007414 1.5e-103 380.2 311 64.3
TWI77G0538 Tripterygium wilfordii HOM05D005522 ORTHO05D007414 1.5e-103 380.2 370 56.5
Atru.chr1.1278 Acer truncatum HOM05D005522 ORTHO05D007414 3.3e-103 379.0 365 57.0
A06p19740 Brassica napus HOM05D005522 ORTHO05D007414 3.3e-103 379.0 366 58.5
BcaC01g01764 Brassica carinata HOM05D005522 ORTHO05D007414 5.6e-103 378.3 363 59.0
BolC3t19512H Brassica oleracea HOM05D005522 ORTHO05D007414 5.6e-103 378.3 363 59.0
Cpa.g.sc5.195 Carica papaya HOM05D005522 ORTHO05D007414 7.3e-103 377.9 361 57.9
AT3G47930 Arabidopsis thaliana HOM05D005522 ORTHO05D007414 9.6e-103 377.5 375 56.3
Gohir.A11G308400 Gossypium hirsutum HOM05D005522 ORTHO05D007414 2.1e-102 376.3 311 60.8
Gohir.D11G323800 Gossypium hirsutum HOM05D005522 ORTHO05D007414 2.1e-102 376.3 365 55.6
Sp5g14030 Schrenkiella parvula HOM05D005522 ORTHO05D007414 2.8e-102 375.9 372 57.3
Oeu062462.1 Olea europaea HOM05D005522 ORTHO05D007414 3.6e-102 375.6 331 60.7
CARHR156640 Cardamine hirsuta HOM05D005522 ORTHO05D007414 4.7e-102 375.2 371 58.0
AL5G27240 Arabidopsis lyrata HOM05D005522 ORTHO05D007414 6.2e-102 374.8 373 57.4
Gorai.007G353900 Gossypium raimondii HOM05D005522 ORTHO05D007414 6.2e-102 374.8 311 60.8
C03p72160 Brassica napus HOM05D005522 ORTHO05D007414 8.1e-102 374.4 374 57.5
AUR62040849 Chenopodium quinoa HOM05D005522 ORTHO05D007414 1.4e-101 373.6 337 58.2
SGA_v2.0_scaffold69G23141 Striga asiatica HOM05D005522 ORTHO05D007414 3.1e-101 372.5 363 57.0
Sed0013105 Sechium edule HOM05D005522 ORTHO05D007414 5.3e-101 371.7 309 62.8
BcaB01g00861 Brassica carinata HOM05D005522 ORTHO05D007414 9.0e-101 370.9 370 57.3
Lj2A394T33 Lonicera japonica HOM05D005522 ORTHO05D007414 9.0e-101 370.9 374 56.1
PSO384G4421 Papaver somniferum HOM05D005522 ORTHO05D007414 9.0e-101 370.9 374 54.8
FAN09G3441 Fragaria x ananassa HOM05D005522 ORTHO05D007414 1.5e-100 370.2 352 59.1
Migut.J01682 Erythranthe guttata HOM05D005522 ORTHO05D007414 2.0e-100 369.8 361 56.5
SalBow6G2663 Salvia bowleyana HOM05D005522 ORTHO05D007414 2.6e-100 369.4 325 60.6
Actinidia39175 Actinidia chinensis HOM05D005522 ORTHO05D007414 3.4e-100 369.0 309 63.1
vmacro07825 Vaccinium macrocarpon HOM05D005522 ORTHO05D007414 1.7e-99 366.7 382 55.2
Aqoxy1G00339 Aquilegia oxysepala HOM05D005522 ORTHO05D007414 2.2e-99 366.3 330 59.1
Sabra16G0043500 Salix brachista HOM05D005522 ORTHO05D007414 4.9e-99 365.2 409 52.3
MD00G1048800 Malus domestica HOM05D005522 ORTHO05D007414 8.4e-99 364.4 380 56.3
Sc19g0008330 Simmondsia chinensis HOM05D005522 ORTHO05D007414 4.2e-98 362.1 339 58.7
PGSC0003DMG400008132 Solanum tuberosum HOM05D005522 ORTHO05D007414 7.1e-98 361.3 364 57.4
MBI03_g28429_MAGBIO Magnolia biondii HOM05D005522 ORTHO05D007414 9.3e-98 360.9 311 60.5
Sopen10g030110 Solanum pennellii HOM05D005522 ORTHO05D007414 1.6e-97 360.1 364 57.1
HanXRQChr13g0391861 Helianthus annuus HOM05D005522 ORTHO05D007414 2.7e-97 359.4 362 54.7
Solyc10g079470.3 Solanum lycopersicum HOM05D005522 ORTHO05D007414 6.0e-97 358.2 364 56.9
ATR0721G040 Amborella trichopoda HOM05D005522 ORTHO05D007414 1.5e-95 353.6 362 54.1
ECA248G3368 Erigeron canadensis HOM05D005522 ORTHO05D007414 4.3e-95 352.1 312 58.7
Nitab4.5_0002267g0070 Nicotiana tabacum HOM05D005522 ORTHO05D007414 2.6e-92 342.8 342 59.1
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 4.5e-92 342.0 342 55.0
MBI03_g36664_MAGBIO Magnolia biondii HOM05D005522 ORTHO05D007414 4.5e-92 342.0 299 59.9
Peaxi162Scf00767g00611 Petunia axillaris HOM05D005522 ORTHO05D007414 7.9e-89 331.3 332 55.7
HPP92_018215 Vanilla planifolia HOM05D005522 ORTHO05D007414 1.0e-88 330.9 339 53.1
Zm00001eb093120 Zea mays HOM05D005522 ORTHO05D007414 3.0e-88 329.3 361 51.8
Os12g0139600 Oryza sativa ssp. japonica HOM05D005522 ORTHO05D007414 1.6e-86 323.6 360 50.8
Os11g0143500 Oryza sativa ssp. japonica HOM05D005522 ORTHO05D007414 4.0e-85 318.9 360 50.6
Prupe.7G046500 Prunus persica HOM05D005522 ORTHO05D007414 6.2e-78 295.0 274 59.9
QL07p006605 Quercus lobata HOM05D005522 ORTHO05D007414 3.1e-77 292.7 232 67.2
CsaV3_4G022170 Cucumis sativus L. HOM05D005522 ORTHO05D007414 2.0e-76 290.0 215 70.2
SHI24612 Sapria himalayana HOM05D005522 ORTHO05D007414 2.5e-63 246.5 173 68.8
Pp3c14_20870 Physcomitrium patens HOM05D005522 ORTHO05D007414 5.1e-56 222.2 303 41.3
Mapoly0077s0021 Marchantia polymorpha HOM05D005522 ORTHO05D007414 9.7e-55 218.0 315 40.3
AagrBONN_evm.TU.Sc2ySwM_362.2734 Anthoceros agrestis HOM05D005522 ORTHO05D007414 7.7e-52 208.4 305 40.0
GSVIVG01033574001 Vitis vinifera HOM05D005522 ORTHO05D007414 7.7e-52 208.4 203 56.7
AUR62030366 Chenopodium quinoa HOM05D005522 ORTHO05D007414 7.2e-50 201.8 204 54.9
SMO146G0252 Selaginella moellendorffii HOM05D005522 ORTHO05D007414 4.4e-47 192.6 321 35.5
CAN.G641.42 Capsicum annuum HOM05D005522 ORTHO05D007414 8.2e-46 188.3 204 52.5
CBR_g48422 Chara braunii HOM05D005522 ORTHO05D007414 1.3e-43 181.0 272 38.6
Cre13.g567100 Chlamydomonas reinhardtii HOM05D005522 ORTHO05D007414 1.6e-33 147.5 262 35.9
PRCOL_00005871 Prasinoderma coloniale HOM05D005522 ORTHO05D007414 8.8e-32 141.7 263 33.8
QL07p006599 Quercus lobata HOM05D005522 ORTHO05D007414 1.2e-31 141.4 80 78.8
Prupe.7G046600 Prunus persica HOM05D005522 ORTHO05D007414 3.4e-31 139.8 181 47.5
MCO07G495 Micromonas commoda HOM05D005522 ORTHO05D007414 5.7e-31 139.0 244 34.4
MD12G1091400 Malus domestica HOM05D005522 ORTHO05D048680 2.8e-30 136.7 103 68.0
SHI24609 Sapria himalayana HOM05D005522 ORTHO05D007414 3.9e-19 99.8 72 68.1
Oeu013025.1 Olea europaea HOM05D005522 ORTHO05D007414 1.2e-17 94.7 58 82.8
BcaB02g10683 Brassica carinata HOM05D005522 ORTHO05D007414 1.7e-14 84.3 85 56.5
SEGI_02017 Sequoiadendron giganteum HOM05D005522 ORTHO05D007414 3.7e-14 83.2 63 52.4
BcaB01g00373 Brassica carinata HOM05D005522 ORTHO05D007414 1.9e-13 80.9 57 75.4
Oeu024729.2 Olea europaea HOM05D005522 ORTHO05D007414 2.1e-09 67.4 42 81.0
BcaC01g02295 Brassica carinata HOM05D005522 ORTHO05D007414 1.7e-06 57.8 71 50.7


User provided reference genes

Program Settings