Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 1.9e-50 202.2 103 100.0
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 4.9e-46 187.6 103 89.3
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 4.0e-40 167.9 103 83.5
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 1.2e-39 166.4 100 83.0
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 2.0e-39 165.6 103 82.5
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 5.8e-39 164.1 103 81.6
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 2.2e-38 162.2 103 79.6
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 2.2e-38 162.2 103 79.6
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 1.1e-37 159.8 103 76.7
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 1.4e-37 159.5 103 78.6
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 1.9e-37 159.1 103 78.6
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 4.1e-37 157.9 99 80.8
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 4.1e-37 157.9 99 80.8
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 3.5e-36 154.8 99 79.8
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 4.6e-36 154.5 103 73.8
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 7.8e-36 153.7 103 73.8
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 7.8e-36 153.7 102 74.5
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.7e-35 152.5 103 75.7
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 1.7e-35 152.5 103 73.8
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 3.0e-35 151.8 102 72.5
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 3.0e-35 151.8 99 76.8
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 3.9e-35 151.4 103 71.8
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 5.1e-35 151.0 103 71.8
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 8.6e-35 150.2 99 71.7
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 1.1e-34 149.8 102 70.6
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 1.1e-34 149.8 102 71.6
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 1.1e-34 149.8 102 71.6
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 1.5e-34 149.4 103 72.8
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 1.9e-34 149.1 100 71.0
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 1.9e-34 149.1 97 73.2
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 1.9e-34 149.1 97 73.2
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 1.9e-34 149.1 103 71.8
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 1.9e-34 149.1 98 73.5
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 2.5e-34 148.7 102 70.6
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 2.5e-34 148.7 103 69.9
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 2.5e-34 148.7 98 73.5
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 2.5e-34 148.7 98 73.5
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 2.5e-34 148.7 98 73.5
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 3.3e-34 148.3 98 73.5
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 4.3e-34 147.9 98 73.5
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 5.6e-34 147.5 98 73.5
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 5.6e-34 147.5 102 71.6
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 5.6e-34 147.5 103 73.8
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 5.6e-34 147.5 102 71.6
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 5.6e-34 147.5 101 73.3
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 5.6e-34 147.5 103 70.9
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 5.6e-34 147.5 98 72.4
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 7.3e-34 147.1 102 70.6
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 9.5e-34 146.7 103 68.9
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 9.5e-34 146.7 101 70.3
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 1.2e-33 146.4 101 70.3
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.2e-33 146.4 101 70.3
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 1.6e-33 146.0 103 68.9
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 1.6e-33 146.0 103 71.8
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 2.1e-33 145.6 104 73.1
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 2.1e-33 145.6 103 69.9
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 3.6e-33 144.8 101 70.3
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 3.6e-33 144.8 94 73.4
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 3.6e-33 144.8 103 68.9
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 3.6e-33 144.8 103 69.9
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 3.6e-33 144.8 103 70.9
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 4.7e-33 144.4 103 68.0
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 6.2e-33 144.1 103 68.9
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 6.2e-33 144.1 103 68.9
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 6.2e-33 144.1 101 68.3
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 8.1e-33 143.7 103 69.9
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 1.1e-32 143.3 103 67.0
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 1.1e-32 143.3 103 68.9
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 1.1e-32 143.3 103 68.9
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 1.1e-32 143.3 103 68.9
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 1.1e-32 143.3 102 68.6
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 1.4e-32 142.9 103 68.9
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 1.4e-32 142.9 103 68.9
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 1.4e-32 142.9 103 68.9
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 1.8e-32 142.5 103 69.9
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 1.8e-32 142.5 99 69.7
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 1.8e-32 142.5 94 73.4
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 1.8e-32 142.5 103 67.0
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 2.3e-32 142.1 103 68.0
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 2.3e-32 142.1 103 68.0
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 2.3e-32 142.1 103 68.0
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 2.3e-32 142.1 103 68.0
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 2.3e-32 142.1 101 67.3
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 3.1e-32 141.7 102 67.6
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 4.0e-32 141.4 103 66.0
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 5.2e-32 141.0 102 65.7
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 5.2e-32 141.0 98 71.4
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 6.8e-32 140.6 100 69.0
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 6.8e-32 140.6 98 71.4
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 6.8e-32 140.6 103 68.0
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 8.9e-32 140.2 103 68.9
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 8.9e-32 140.2 104 69.2
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 8.9e-32 140.2 102 67.6
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 8.9e-32 140.2 103 65.0
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 8.9e-32 140.2 97 70.1
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 1.2e-31 139.8 103 67.0
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 1.2e-31 139.8 97 70.1
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 1.5e-31 139.4 96 66.7
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 2.0e-31 139.0 100 70.0
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 2.6e-31 138.7 98 68.4
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 3.4e-31 138.3 97 69.1
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 4.4e-31 137.9 103 65.0
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 5.8e-31 137.5 99 66.7
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.3e-30 136.3 102 63.7
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 1.3e-30 136.3 97 68.0
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 2.9e-30 135.2 102 63.7
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 3.7e-30 134.8 99 65.7
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 3.7e-30 134.8 103 65.0
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 6.4e-30 134.0 99 65.7
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 1.4e-29 132.9 99 63.6
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 1.4e-29 132.9 98 68.4
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.9e-29 132.5 104 69.2
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 1.9e-29 132.5 73 86.3
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 2.4e-29 132.1 73 84.9
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 2.7e-28 128.6 95 70.5
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 6.0e-28 127.5 95 69.5
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 7.8e-28 127.1 99 62.6
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.3e-27 126.3 98 64.3
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.3e-27 126.3 98 64.3
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 1.7e-27 125.9 97 61.9
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 2.3e-27 125.6 73 80.8
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 3.0e-27 125.2 103 62.1
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 3.0e-27 125.2 95 68.4
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 6.6e-27 124.0 95 68.4
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 6.6e-27 124.0 95 68.4
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 1.5e-23 112.8 70 75.7
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 4.2e-21 104.8 102 58.8
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 4.2e-21 104.8 102 58.8
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 1.2e-20 103.2 69 71.0
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 4.6e-20 101.3 160 38.1
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.0e-19 100.1 88 56.8
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 2.3e-19 99.0 76 63.2
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 2.3e-19 99.0 74 64.9
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 4.3e-18 94.7 59 78.0
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 5.3e-16 87.8 84 52.4
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 1.2e-15 86.7 86 52.3
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 1.5e-15 86.3 103 50.5
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 2.6e-15 85.5 70 54.3
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 2.6e-15 85.5 69 50.7
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.0e-11 73.6 87 41.4
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 2.3e-11 72.4 80 45.0
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 1.1e-10 70.1 53 62.3
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 3.3e-10 68.6 77 49.4
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 3.3e-10 68.6 98 45.9
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 3.1e-08 62.0 92 43.5
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 6.9e-08 60.8 61 47.5
Cfa022274 Carpinus fangiana HOM05D005227 ORTHO05D006379 8.4e-06 53.9 93 34.4


User provided reference genes

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