Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4256 Trifolium pratense HOM05D001233 ORTHO05D019078 5.2e-34 147.1 73 100.0
TPR.G838 Trifolium pratense HOM05D001233 ORTHO05D019078 5.2e-26 120.6 70 85.7
Medtr6g011560 Medicago truncatula HOM05D001233 ORTHO05D001233 1.2e-25 119.4 71 85.9
Medtr6g011550 Medicago truncatula HOM05D001233 ORTHO05D001233 4.4e-25 117.5 71 84.5
Psat1g075720 Pisum sativum HOM05D001233 ORTHO05D001233 4.1e-23 110.9 70 82.9
Lj2g0019347 Lotus japonicus HOM05D001233 ORTHO05D001233 2.9e-21 104.8 69 76.8
Lalb_Chr02g0159601 Lupinus albus HOM05D001233 ORTHO05D001233 5.5e-20 100.5 70 71.4
Glyma.19G020700 Glycine max HOM05D001233 ORTHO05D001233 1.2e-19 99.4 70 72.9
Phvul.004G027000 Phaseolus vulgaris HOM05D001233 ORTHO05D001233 1.2e-17 92.8 70 71.4
VMungo0464G0879 Vigna mungo HOM05D001233 ORTHO05D001233 1.2e-17 92.8 70 68.6
Glyma.13G064200 Glycine max HOM05D001233 ORTHO05D001233 2.0e-17 92.0 70 68.6
arahy.Tifrunner.gnm1.ann1.54ZV2T Arachis hypogaea HOM05D001233 ORTHO05D001233 4.4e-17 90.9 71 69.0
Medtr7g009930 Medicago truncatula HOM05D001233 ORTHO05D001233 1.3e-16 89.4 70 65.7
arahy.Tifrunner.gnm1.ann1.EPH7QX Arachis hypogaea HOM05D001233 ORTHO05D001233 1.7e-16 89.0 71 67.6
arahy.Tifrunner.gnm1.ann1.TWA65T Arachis hypogaea HOM05D001233 ORTHO05D001233 1.7e-16 89.0 71 67.6
arahy.Tifrunner.gnm1.ann1.L7YHKS Arachis hypogaea HOM05D001233 ORTHO05D001233 4.9e-16 87.4 68 70.6
TPR.G39962 Trifolium pratense HOM05D001233 ORTHO05D019078 4.9e-16 87.4 71 63.4
arahy.Tifrunner.gnm1.ann1.MQNW98 Arachis hypogaea HOM05D001233 ORTHO05D001233 8.3e-16 86.7 71 66.2
arahy.Tifrunner.gnm1.ann1.Y3RZ5Q Arachis hypogaea HOM05D001233 ORTHO05D001233 3.2e-15 84.7 71 64.8
Phvul.008G042600 Phaseolus vulgaris HOM05D001233 ORTHO05D001233 5.4e-15 84.0 70 58.6
Ca_03967_v3 Cicer arietinum L. HOM05D001233 ORTHO05D001233 1.2e-14 82.8 72 61.1
Prupe.3G270200 Prunus persica HOM05D001233 ORTHO05D001233 7.8e-14 80.1 72 55.6
QL02p081190 Quercus lobata HOM05D001233 ORTHO05D001233 1.3e-13 79.3 70 55.7
VMungo1383G3015 Vigna mungo HOM05D001233 ORTHO05D001233 1.3e-13 79.3 70 58.6
FAN14G4863 Fragaria x ananassa HOM05D001233 ORTHO05D001233 1.7e-13 79.0 72 58.3
Glyma.18G257700 Glycine max HOM05D001233 ORTHO05D001233 1.7e-13 79.0 73 57.5
FvH4_6g49081 Fragaria vesca HOM05D001233 ORTHO05D001233 2.9e-13 78.2 72 58.3
Glyma.09G239800 Glycine max HOM05D001233 ORTHO05D001233 2.9e-13 78.2 74 58.1
Psat3g196000 Pisum sativum HOM05D001233 ORTHO05D001233 5.0e-13 77.4 70 52.9
Atru.chr8.2588 Acer truncatum HOM05D001233 ORTHO05D001233 6.6e-13 77.0 70 52.9
Potri.017G080000 Populus trichocarpa HOM05D001233 ORTHO05D001233 8.6e-13 76.6 70 54.3
RcHm_v2.0_Chr2g0168911 Rosa chinensis HOM05D001233 ORTHO05D001233 8.6e-13 76.6 72 55.6
Atru.chr8.2673 Acer truncatum HOM05D001233 ORTHO05D001233 1.1e-12 76.3 70 52.9
Lj1g0004969 Lotus japonicus HOM05D001233 ORTHO05D001233 1.5e-12 75.9 71 59.2
Ciclev10011989m.g Citrus clementina HOM05D001233 ORTHO05D001233 2.5e-12 75.1 79 46.8
Sed0017673 Sechium edule HOM05D001233 ORTHO05D001233 4.3e-12 74.3 71 54.9
Atru.chr3.99 Acer truncatum HOM05D001233 ORTHO05D001233 7.3e-12 73.6 70 47.1
Atru.chr8.2589 Acer truncatum HOM05D001233 ORTHO05D001233 7.3e-12 73.6 70 47.1
Atru.chr8.2672 Acer truncatum HOM05D001233 ORTHO05D001233 7.3e-12 73.6 70 47.1
Duzib147G0258 Durio zibethinus HOM05D001233 ORTHO05D001233 7.3e-12 73.6 64 54.7
ClCG10G014930 Citrullus lanatus HOM05D001233 ORTHO05D001233 9.5e-12 73.2 71 53.5
Hma1.2p1_0449F.1_g155290 Hydrangea macrophylla HOM05D001233 ORTHO05D001233 9.5e-12 73.2 70 51.4
CiPaw.03G029100 Carya illinoinensis HOM05D001233 ORTHO05D001233 1.2e-11 72.8 70 50.0
Thecc.04G099900 Theobroma cacao HOM05D001233 ORTHO05D001233 1.6e-11 72.4 70 52.9
Sabra17G0071500 Salix brachista HOM05D001233 ORTHO05D001233 3.6e-11 71.2 70 51.4
Haze_14560 Corylus avellana HOM05D001233 ORTHO05D001233 6.1e-11 70.5 70 50.0
CsaV3_3G041600 Cucumis sativus L. HOM05D001233 ORTHO05D001233 8.0e-11 70.1 71 49.3
Gohir.A05G364600 Gossypium hirsutum HOM05D001233 ORTHO05D001233 1.4e-10 69.3 71 53.5
MELO3C009884.2 Cucumis melo HOM05D001233 ORTHO05D001233 1.8e-10 68.9 71 49.3
Cfa007525 Carpinus fangiana HOM05D001233 ORTHO05D001233 2.3e-10 68.6 70 48.6
Gohir.D04G050200 Gossypium hirsutum HOM05D001233 ORTHO05D001233 2.3e-10 68.6 71 53.5
Gorai.012G055600 Gossypium raimondii HOM05D001233 ORTHO05D001233 2.3e-10 68.6 71 53.5
Dinv06525 Davidia involucrata HOM05D001233 ORTHO05D001233 3.1e-10 68.2 70 45.7
MD17G1048800 Malus domestica HOM05D001233 ORTHO05D001233 3.1e-10 68.2 70 47.1
TWI60G0967 Tripterygium wilfordii HOM05D001233 ORTHO05D001233 4.0e-10 67.8 69 46.4
TAR629G3063 Trochodendron aralioides HOM05D001233 ORTHO05D001233 4.0e-10 67.8 70 48.6
COL.COLO4_36110 Corchorus olitorius HOM05D001233 ORTHO05D001233 5.2e-10 67.4 68 52.9
HanXRQChr15g0487791 Helianthus annuus HOM05D001233 ORTHO05D001233 5.2e-10 67.4 69 40.6
QL02p081175 Quercus lobata HOM05D001233 ORTHO05D001233 6.8e-10 67.0 70 48.6
Eucgr.J01219 Eucalyptus grandis HOM05D001233 ORTHO05D001233 1.5e-09 65.9 75 41.3
PGR083G0890 Punica granatum HOM05D001233 ORTHO05D001233 1.5e-09 65.9 75 45.3
TWI32G0663 Tripterygium wilfordii HOM05D001233 ORTHO05D001233 2.0e-09 65.5 64 46.9
TWI32G1208 Tripterygium wilfordii HOM05D001233 ORTHO05D001233 2.0e-09 65.5 65 46.2
Ciclev10012004m.g Citrus clementina HOM05D001233 ORTHO05D001233 2.6e-09 65.1 66 47.0
Duzib147G0746 Durio zibethinus HOM05D001233 ORTHO05D001233 3.4e-09 64.7 70 52.9
PSO591G0417 Papaver somniferum HOM05D001233 ORTHO05D001233 4.4e-09 64.3 70 48.6
COL.COLO4_36111 Corchorus olitorius HOM05D001233 ORTHO05D001233 7.5e-09 63.5 53 52.8
TAR622G0290 Trochodendron aralioides HOM05D001233 ORTHO05D001233 7.5e-09 63.5 70 45.7
TAR729G0001 Trochodendron aralioides HOM05D001233 ORTHO05D001233 7.5e-09 63.5 70 45.7
MELO3C017162.2 Cucumis melo HOM05D001233 ORTHO05D001233 9.8e-09 63.2 70 42.9
Potri.012G128800 Populus trichocarpa HOM05D001233 ORTHO05D001233 9.8e-09 63.2 70 45.7
Manes.15G176900 Manihot esculenta HOM05D001233 ORTHO05D001233 1.3e-08 62.8 71 46.5
TPR.G4343 Trifolium pratense HOM05D001233 ORTHO05D001233 1.3e-08 62.8 45 60.0
Aqoxy3G03318 Aquilegia oxysepala HOM05D001233 ORTHO05D001233 2.2e-08 62.0 72 45.8
Cc00_g06000 Coffea canephora HOM05D001233 ORTHO05D001233 2.2e-08 62.0 71 47.9
Lj7A399T58 Lonicera japonica HOM05D001233 ORTHO05D001233 2.2e-08 62.0 71 42.3
Lj7A442T85 Lonicera japonica HOM05D001233 ORTHO05D001233 2.2e-08 62.0 71 42.3
PSO591G0335 Papaver somniferum HOM05D001233 ORTHO05D001233 2.2e-08 62.0 71 43.7
MSTRG.23953 Avicennia marina HOM05D001233 ORTHO05D001233 2.9e-08 61.6 70 42.9
CANSAT64G0969 Cannabis sativa HOM05D001233 ORTHO05D001233 2.9e-08 61.6 70 44.3
CANSAT64G2092 Cannabis sativa HOM05D001233 ORTHO05D001233 2.9e-08 61.6 70 44.3
ClCG06G016310 Citrullus lanatus HOM05D001233 ORTHO05D001233 2.9e-08 61.6 70 42.9
Ciclev10024457m.g Citrus clementina HOM05D001233 ORTHO05D001233 2.9e-08 61.6 70 37.1
MELO3C034493.2 Cucumis melo HOM05D027665 ORTHO05D019078 2.9e-08 61.6 62 51.6
PGSC0003DMG403001316 Solanum tuberosum HOM05D001233 ORTHO05D001233 2.9e-08 61.6 72 44.4
Actinidia02707 Actinidia chinensis HOM05D001233 ORTHO05D001233 3.7e-08 61.2 70 42.9
CSS0013197 Camellia sinensis var. sinensis HOM05D001233 ORTHO05D001233 3.7e-08 61.2 40 60.0
CSS0015640 Camellia sinensis var. sinensis HOM05D001233 ORTHO05D001233 3.7e-08 61.2 40 60.0
CSS0019435 Camellia sinensis var. sinensis HOM05D001233 ORTHO05D001233 3.7e-08 61.2 40 60.0
Glyma.17G098400 Glycine max HOM05D001233 ORTHO05D001233 4.9e-08 60.8 70 44.3
MELO3C017161.2 Cucumis melo HOM05D001233 ORTHO05D001233 6.4e-08 60.5 70 44.3
CsaV3_1G002220 Cucumis sativus L. HOM05D001233 ORTHO05D001233 6.4e-08 60.5 71 42.3
MD14G1196700 Malus domestica HOM05D001233 ORTHO05D001233 6.4e-08 60.5 70 42.9
Oeu062090.2 Olea europaea HOM05D001233 ORTHO05D001233 6.4e-08 60.5 70 41.4
Sed0003220 Sechium edule HOM05D001233 ORTHO05D001233 8.3e-08 60.1 70 40.0
CAN.G1305.6 Capsicum annuum HOM05D001233 ORTHO05D001233 1.1e-07 59.7 41 58.5
Nitab4.5_0010010g0010 Nicotiana tabacum HOM05D001233 ORTHO05D001233 1.1e-07 59.7 70 41.4
Prupe.5G188800 Prunus persica HOM05D001233 ORTHO05D001233 1.1e-07 59.7 50 50.0
Solyc03g113030.4 Solanum lycopersicum HOM05D001233 ORTHO05D001233 1.1e-07 59.7 44 56.8
Sopen03g032110 Solanum pennellii HOM05D001233 ORTHO05D001233 1.1e-07 59.7 44 56.8
GSVIVG01011365001 Vitis vinifera HOM05D001233 ORTHO05D001233 1.1e-07 59.7 70 42.9
GSVIVG01011370001 Vitis vinifera HOM05D001233 ORTHO05D001233 1.1e-07 59.7 70 42.9
CAN.G206.132 Capsicum annuum HOM05D001233 ORTHO05D001233 1.4e-07 59.3 69 44.9
CAN.G206.134 Capsicum annuum HOM05D001233 ORTHO05D001233 1.4e-07 59.3 72 43.1
Gohir.D09G019600 Gossypium hirsutum HOM05D001233 ORTHO05D001233 1.4e-07 59.3 86 37.2
Gorai.006G023000 Gossypium raimondii HOM05D001233 ORTHO05D001233 1.4e-07 59.3 86 37.2
Potri.004G129700 Populus trichocarpa HOM05D001233 ORTHO05D001233 1.4e-07 59.3 71 46.5
MELO3C031436.2 Cucumis melo HOM05D027665 ORTHO05D166745 1.9e-07 58.9 62 50.0
Migut.H00902 Erythranthe guttata HOM05D001233 ORTHO05D001233 1.9e-07 58.9 65 40.0
SalBow1G4915 Salvia bowleyana HOM05D001233 ORTHO05D001233 1.9e-07 58.9 65 49.2
PGSC0003DMG400018084 Solanum tuberosum HOM05D001233 ORTHO05D001233 1.9e-07 58.9 41 56.1
BcaB01g05078 Brassica carinata HOM05D001233 ORTHO05D001233 2.4e-07 58.5 41 61.0
ECA232G4212 Erigeron canadensis HOM05D001233 ORTHO05D001233 2.4e-07 58.5 67 35.8
Sabra12G0096700 Salix brachista HOM05D001233 ORTHO05D001533 2.4e-07 58.5 41 61.0
HPP92_016460 Vanilla planifolia HOM05D001233 ORTHO05D001233 2.4e-07 58.5 68 44.1
HPP92_027149 Vanilla planifolia HOM05D001233 ORTHO05D001233 2.4e-07 58.5 68 44.1
Aqoxy3G03320 Aquilegia oxysepala HOM05D001233 ORTHO05D001233 3.2e-07 58.2 78 39.7
CARHR198170 Cardamine hirsuta HOM05D001233 ORTHO05D001233 3.2e-07 58.2 41 63.4
Peaxi162Scf00009g00221 Petunia axillaris HOM05D001233 ORTHO05D001233 3.2e-07 58.2 41 56.1
Rhsim12G0157700 Rhododendron simsii HOM05D001233 ORTHO05D001233 3.2e-07 58.2 70 40.0
Sopen02g032540 Solanum pennellii HOM05D001233 ORTHO05D001233 3.2e-07 58.2 72 43.1
A03p06990 Brassica napus HOM05D001233 ORTHO05D001233 4.1e-07 57.8 41 61.0
BraA03t10020Z Brassica rapa HOM05D001233 ORTHO05D001233 4.1e-07 57.8 41 61.0
CANSAT64G2877 Cannabis sativa HOM05D001233 ORTHO05D001233 4.1e-07 57.8 74 41.9
AUR62038860 Chenopodium quinoa HOM05D001233 ORTHO05D001233 4.1e-07 57.8 44 54.5
DCAR_026067 Daucus carota HOM05D001233 ORTHO05D001233 4.1e-07 57.8 40 57.5
FAN13G1865 Fragaria x ananassa HOM05D001233 ORTHO05D001233 4.1e-07 57.8 68 45.6
Gohir.A09G020000 Gossypium hirsutum HOM05D001233 ORTHO05D001233 4.1e-07 57.8 86 36.0
Potri.017G080200 Populus trichocarpa HOM05D001233 ORTHO05D001233 4.1e-07 57.8 66 45.5
vmacro18204 Vaccinium macrocarpon HOM05D001233 ORTHO05D001233 4.1e-07 57.8 70 44.3
ATR0564G317 Amborella trichopoda HOM05D001233 ORTHO05D001233 5.4e-07 57.4 75 38.7
CSS0029878 Camellia sinensis var. sinensis HOM05D001233 ORTHO05D001233 5.4e-07 57.4 33 66.7
Nitab4.5_0000785g0080 Nicotiana tabacum HOM05D001233 ORTHO05D001233 5.4e-07 57.4 41 56.1
AL6G25960 Arabidopsis lyrata HOM05D001233 ORTHO05D001233 7.0e-07 57.0 41 61.0
CAN.G206.133 Capsicum annuum HOM05D001233 ORTHO05D001233 7.0e-07 57.0 65 43.1
FvH4_5g15261 Fragaria vesca HOM05D001233 ORTHO05D001284 7.0e-07 57.0 68 44.1
Lju41A24T35 Lonicera japonica HOM05D001233 ORTHO05D001233 7.0e-07 57.0 70 38.6
Os02g0575800 Oryza sativa ssp. japonica HOM05D001233 ORTHO05D001233 7.0e-07 57.0 67 40.3
RhsimUnG0099200 Rhododendron simsii HOM05D001233 ORTHO05D001233 7.0e-07 57.0 71 39.4
TWI60G0099 Tripterygium wilfordii HOM05D001233 ORTHO05D001233 7.0e-07 57.0 41 56.1
AT5G15140 Arabidopsis thaliana HOM05D001233 ORTHO05D001233 9.2e-07 56.6 41 61.0
Manes.06G095000 Manihot esculenta HOM05D001233 ORTHO05D001233 9.2e-07 56.6 70 44.3
Nn3g17164 Nelumbo nucifera HOM05D001233 ORTHO05D001233 9.2e-07 56.6 39 53.8
Oeu060928.1 Olea europaea HOM05D001233 ORTHO05D001233 9.2e-07 56.6 70 40.0
FAN08G0119 Fragaria x ananassa HOM05D000610 ORTHO05D001284 1.2e-06 56.2 68 44.1
BcaB08g36922 Brassica carinata HOM05D001233 ORTHO05D001233 1.6e-06 55.8 41 61.0
BcaB08g36924 Brassica carinata HOM05D001233 ORTHO05D001233 1.6e-06 55.8 41 61.0
C09p61990 Brassica napus HOM05D001233 ORTHO05D001233 1.6e-06 55.8 41 61.0
BolC9t59038H Brassica oleracea HOM05D001233 ORTHO05D001233 1.6e-06 55.8 41 61.0
Carub.0006s1331 Capsella rubella HOM05D001233 ORTHO05D001233 1.6e-06 55.8 41 58.5
CAN.G206.128 Capsicum annuum HOM05D001233 ORTHO05D001233 1.6e-06 55.8 72 41.7
CiPaw.11G041400 Carya illinoinensis HOM05D001233 ORTHO05D001233 1.6e-06 55.8 67 41.8
COL.COLO4_10426 Corchorus olitorius HOM05D001233 ORTHO05D001233 1.6e-06 55.8 61 49.2
Thhalv10013324m.g Eutrema salsugineum HOM05D001233 ORTHO05D001233 1.6e-06 55.8 41 61.0
RcHm_v2.0_Chr7g0180821 Rosa chinensis HOM05D001233 ORTHO05D001233 1.6e-06 55.8 71 42.3
THA.LOC104802419 Tarenaya hassleriana HOM05D001233 ORTHO05D001233 1.6e-06 55.8 45 55.6
Cc07_g03170 Coffea canephora HOM05D001233 ORTHO05D001233 2.0e-06 55.5 73 45.2
Potri.017G080100 Populus trichocarpa HOM05D001233 ORTHO05D001233 2.0e-06 55.5 66 43.9
Sabra17G0071700 Salix brachista HOM05D001233 ORTHO05D001233 2.0e-06 55.5 35 62.9
C03p07970 Brassica napus HOM05D001233 ORTHO05D001233 2.7e-06 55.1 39 61.5
BolC3t13294H Brassica oleracea HOM05D001233 ORTHO05D001233 2.7e-06 55.1 39 61.5
MBI05_g00396_MAGBIO Magnolia biondii HOM05D001233 ORTHO05D001233 2.7e-06 55.1 70 41.4
Sabra17G0071900 Salix brachista HOM05D001233 ORTHO05D001233 2.7e-06 55.1 34 67.6
SGA_v2.0_scaffold56G20039 Striga asiatica HOM05D001233 ORTHO05D001233 2.7e-06 55.1 70 37.1
Cpa.g.sc14.24 Carica papaya HOM05D001233 ORTHO05D001233 3.5e-06 54.7 41 56.1
Cpa.g.sc388.4 Carica papaya HOM05D001233 ORTHO05D001233 3.5e-06 54.7 70 44.3
ClCG06G005910 Citrullus lanatus HOM05D001233 ORTHO05D001233 3.5e-06 54.7 70 40.0
HanXRQChr09g0265471 Helianthus annuus HOM05D001233 ORTHO05D001233 3.5e-06 54.7 64 37.5
Lsat_1_v5_gn_4_177060 Lactuca sativa HOM05D001233 ORTHO05D001233 3.5e-06 54.7 69 37.7
Manes.17G023300 Manihot esculenta HOM05D001233 ORTHO05D001233 3.5e-06 54.7 70 44.3
SEGI_22927 Sequoiadendron giganteum HOM05D001233 ORTHO05D001233 3.5e-06 54.7 53 47.2
unitig_62.g23559 Utricularia gibba HOM05D001233 ORTHO05D001233 3.5e-06 54.7 37 59.5
Atru.chr9.2290 Acer truncatum HOM05D001233 ORTHO05D001233 4.6e-06 54.3 64 43.8
Lju41A24T37 Lonicera japonica HOM05D001233 ORTHO05D001233 4.6e-06 54.3 70 37.1
Nitab4.5_0000564g0200 Nicotiana tabacum HOM05D001233 ORTHO05D001233 4.6e-06 54.3 71 40.8
Peaxi162Scf00129g00433 Petunia axillaris HOM05D001233 ORTHO05D001233 4.6e-06 54.3 39 53.8
PGSC0003DMG402001316 Solanum tuberosum HOM05D001233 ORTHO05D001233 4.6e-06 54.3 39 53.8
vmacro18205 Vaccinium macrocarpon HOM05D001233 ORTHO05D001233 4.6e-06 54.3 64 45.3
Nitab4.5_0006635g0040 Nicotiana tabacum HOM05D001233 ORTHO05D001233 6.0e-06 53.9 67 41.8
PGSC0003DMG400001317 Solanum tuberosum HOM05D001233 ORTHO05D001233 6.0e-06 53.9 69 42.0
GSVIVG01008039001 Vitis vinifera HOM05D001233 ORTHO05D001233 6.0e-06 53.9 70 41.4
Ah.10g031440 Amaranthus hybridus HOM05D001233 ORTHO05D001233 7.8e-06 53.5 48 45.8
QL06p003735 Quercus lobata HOM05D001233 ORTHO05D001233 7.8e-06 53.5 42 52.4
Rhsim08G0067600 Rhododendron simsii HOM05D001233 ORTHO05D001233 7.8e-06 53.5 66 45.5
Sabra17G0071600 Salix brachista HOM05D001233 ORTHO05D001233 7.8e-06 53.5 71 40.8
PGSC0003DMG400001318 Solanum tuberosum HOM05D001233 ORTHO05D001233 7.8e-06 53.5 67 41.8


User provided reference genes

Program Settings