Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 3.0e-151 538.5 275 100.0
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 9.4e-113 410.6 274 79.9
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 2.7e-107 392.5 269 74.3
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 3.5e-99 365.5 269 71.0
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 8.3e-93 344.4 245 70.2
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 3.2e-84 315.8 270 64.4
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 1.0e-82 310.8 270 63.0
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 2.0e-78 296.6 271 59.8
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 4.9e-77 292.0 206 73.8
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 7.1e-76 288.1 272 57.7
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 5.1e-74 282.0 270 57.4
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 5.2e-71 271.9 272 57.0
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 2.3e-66 256.5 165 73.9
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.8e-63 246.9 271 50.9
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 1.3e-61 240.7 255 52.5
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 2.9e-61 239.6 264 51.5
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 2.7e-59 233.0 269 48.7
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 6.0e-59 231.9 262 49.6
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 6.2e-56 221.9 271 46.5
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 6.9e-55 218.4 273 46.9
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 4.5e-54 215.7 193 57.5
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.3e-53 214.2 274 44.5
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 2.4e-52 209.9 271 46.5
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 7.1e-52 208.4 274 44.9
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 2.1e-51 206.8 270 45.2
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 1.8e-50 203.8 272 44.1
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 2.3e-50 203.4 275 45.1
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 3.0e-50 203.0 275 45.1
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.9e-50 202.6 278 43.9
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 5.1e-50 202.2 293 42.0
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 8.1e-48 194.9 289 42.6
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 1.8e-47 193.7 274 45.3
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 9.0e-47 191.4 269 41.6
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 9.0e-47 191.4 217 50.7
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 9.0e-47 191.4 279 41.9
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.6e-46 189.9 274 41.6
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 3.4e-46 189.5 255 42.0
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 5.8e-46 188.7 274 44.2
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 7.6e-46 188.3 262 44.3
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.0e-45 188.0 286 42.3
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.3e-45 187.6 274 43.8
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 2.9e-45 186.4 288 42.7
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.4e-44 184.1 275 42.9
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 1.9e-44 183.7 241 45.6
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 3.2e-44 183.0 277 43.0
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.6e-43 180.6 280 38.2
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.6e-43 179.1 253 40.3
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 1.0e-42 177.9 372 34.1
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 3.0e-42 176.4 285 38.6
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 3.9e-42 176.0 271 40.2
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 5.1e-42 175.6 256 41.0
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 6.7e-42 175.3 269 38.7
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 1.5e-41 174.1 270 40.0
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 1.9e-41 173.7 272 41.2
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 2.5e-41 173.3 282 39.7
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 5.7e-41 172.2 284 40.5
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 5.7e-41 172.2 348 37.6
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 1.3e-40 171.0 156 57.1
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 1.3e-40 171.0 273 40.7
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.6e-40 170.6 280 37.5
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 2.8e-40 169.9 253 39.5
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 6.3e-40 168.7 269 40.9
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 1.1e-39 167.9 270 39.3
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 1.1e-39 167.9 322 35.7
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 1.1e-39 167.9 322 35.4
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 1.4e-39 167.5 244 41.0
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 1.8e-39 167.2 158 51.9
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 6.9e-39 165.2 307 35.8
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 9.0e-39 164.9 251 38.2
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 1.2e-38 164.5 278 38.5
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 2.0e-38 163.7 237 43.5
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 3.4e-38 162.9 278 39.9
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 3.4e-38 162.9 269 39.0
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 7.6e-38 161.8 326 35.0
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 7.6e-38 161.8 310 36.8
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 7.6e-38 161.8 303 36.6
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 1.0e-37 161.4 316 35.4
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 1.7e-37 160.6 372 35.5
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 2.9e-37 159.8 283 41.3
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 6.5e-37 158.7 322 35.4
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 6.5e-37 158.7 298 35.2
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 1.1e-36 157.9 288 38.9
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.1e-36 157.9 253 38.3
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 4.2e-36 156.0 329 34.3
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 5.5e-36 155.6 172 48.8
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.2e-35 154.5 293 38.2
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 1.6e-35 154.1 301 33.9
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.6e-35 154.1 350 33.4
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 2.1e-35 153.7 352 33.2
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 2.7e-35 153.3 233 39.5
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 4.6e-35 152.5 306 35.6
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 6.1e-35 152.1 172 47.7
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 6.1e-35 152.1 315 35.2
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 1.0e-34 151.4 157 46.5
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.0e-34 149.8 352 33.0
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.9e-33 147.1 326 34.0
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 4.3e-33 146.0 375 31.5
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.7e-32 142.9 157 47.1
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 4.8e-32 142.5 277 37.5
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.4e-31 141.0 256 36.7
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.4e-31 141.0 270 34.1
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.4e-31 141.0 178 43.8
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 1.8e-31 140.6 297 33.7
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.8e-31 140.6 266 38.3
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 1.8e-31 140.6 254 36.2
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 6.9e-31 138.7 261 39.1
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 9.0e-31 138.3 241 39.0
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 1.2e-30 137.9 142 49.3
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.5e-30 137.5 165 44.8
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 2.6e-30 136.7 267 34.5
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 2.6e-30 136.7 282 37.2
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 1.7e-29 134.0 325 30.2
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 5.0e-29 132.5 242 37.2
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 6.5e-29 132.1 155 43.2
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 1.4e-28 131.0 334 32.0
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.2e-28 129.8 274 35.4
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 5.5e-28 129.0 246 38.2
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 2.7e-27 126.7 247 36.8
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 3.6e-27 126.3 208 40.4
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 6.1e-27 125.6 243 36.6
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 6.1e-27 125.6 243 36.6
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.0e-26 124.8 267 33.0
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 1.0e-26 124.8 333 30.9
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 5.1e-26 122.5 241 36.9
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 5.1e-26 122.5 241 36.9
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.5e-25 120.9 243 35.4
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 3.3e-25 119.8 251 35.1
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 5.7e-25 119.0 175 40.0
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 3.7e-24 116.3 230 38.3
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 1.1e-23 114.8 246 33.7
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.1e-23 114.8 326 31.0
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 1.1e-23 114.8 268 31.0
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 3.1e-23 113.2 256 35.5
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 1.2e-22 111.3 169 42.0
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 4.5e-22 109.4 251 35.5
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 5.9e-22 109.0 333 29.7
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 1.3e-21 107.8 211 37.9
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 1.3e-21 107.8 213 38.0
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 2.2e-21 107.1 248 31.0
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 3.8e-21 106.3 216 37.5
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 8.5e-21 105.1 245 33.5
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 1.9e-20 104.0 131 38.9
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 9.4e-20 101.7 252 32.1
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 1.2e-19 101.3 272 31.2
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 2.7e-19 100.1 101 46.5
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.8e-18 97.4 262 32.4
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.8e-18 97.4 109 45.0
arahy.Tifrunner.gnm1.ann1.ZI9W5R Arachis hypogaea HOM05D004296 ORTHO05D005045 1.5e-17 94.4 134 41.0
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 4.4e-17 92.8 256 28.1
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 9.7e-17 91.7 78 50.0
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 2.8e-16 90.1 242 31.4
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.2e-13 80.5 96 43.8
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 8.5e-13 78.6 90 42.2
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 4.2e-12 76.3 99 45.5
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 3.6e-11 73.2 179 32.4
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 1.5e-09 67.8 144 34.7
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 7.5e-09 65.5 55 52.7
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 7.5e-09 65.5 154 31.2
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 6.3e-08 62.4 54 53.7
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 1.8e-07 60.8 88 35.2


User provided reference genes

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