Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 2.1e-291 1005.0 512 100.0
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 1.2e-249 866.3 479 87.9
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 4.6e-246 854.4 461 90.7
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 3.3e-244 848.2 485 85.8
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 9.7e-220 766.9 444 83.3
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 1.4e-210 736.5 442 81.2
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 1.6e-206 723.0 492 74.4
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 1.7e-200 703.0 471 76.2
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 3.2e-199 698.7 459 75.4
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 4.1e-194 681.8 486 71.8
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 8.8e-189 664.1 466 69.5
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 6.3e-187 657.9 454 70.5
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 9.1e-186 654.1 459 71.9
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 2.0e-185 652.9 442 71.3
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 4.5e-185 651.7 421 74.3
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 3.8e-184 648.7 421 74.3
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 2.7e-182 642.5 448 71.7
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 1.0e-181 640.6 424 71.5
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 1.4e-181 640.2 464 68.1
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 1.8e-181 639.8 436 70.9
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 2.3e-181 639.4 436 69.7
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 3.0e-181 639.0 421 72.9
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 6.8e-181 637.9 436 71.1
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 2.6e-180 636.0 471 65.6
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 3.4e-180 635.6 416 73.3
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 7.5e-180 634.4 457 65.6
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 2.2e-179 632.9 471 63.9
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 2.8e-179 632.5 422 69.7
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 4.9e-179 631.7 425 69.6
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 5.4e-178 628.2 434 68.2
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 2.7e-177 625.9 429 69.2
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 3.5e-177 625.5 449 68.8
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 3.5e-177 625.5 422 68.7
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 2.3e-176 622.9 424 70.3
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 6.6e-176 621.3 412 72.1
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 6.6e-176 621.3 418 70.8
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 3.3e-175 619.0 466 64.6
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 3.3e-175 619.0 413 69.5
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 2.1e-174 616.3 455 65.9
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 4.7e-174 615.1 411 71.8
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 6.8e-173 611.3 422 69.0
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 1.2e-172 610.5 430 70.5
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 3.4e-172 609.0 418 69.9
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 9.8e-172 607.4 476 64.7
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 1.8e-170 603.2 426 67.1
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 3.2e-170 602.4 421 68.2
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 4.1e-170 602.1 458 66.2
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 4.1e-170 602.1 404 69.8
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 1.6e-169 600.1 442 65.6
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 2.7e-169 599.4 475 63.4
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 2.7e-169 599.4 413 69.7
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 7.8e-169 597.8 431 66.6
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 1.1e-167 594.0 406 70.0
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 4.7e-166 588.6 422 66.4
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 1.0e-165 587.4 448 66.1
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 1.8e-165 586.6 427 65.8
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 3.1e-165 585.9 408 70.1
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 9.8e-164 580.9 422 67.5
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 5.4e-162 575.1 494 59.3
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 9.2e-162 574.3 421 62.9
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 9.2e-162 574.3 433 62.6
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 1.6e-161 573.5 438 63.2
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 2.0e-161 573.2 468 62.0
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 2.7e-161 572.8 524 57.4
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 7.8e-161 571.2 433 66.5
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.0e-160 570.9 424 66.0
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 3.0e-160 569.3 435 65.3
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 5.0e-160 568.5 411 65.2
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 4.3e-159 565.5 425 65.6
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 5.6e-159 565.1 464 62.3
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 1.6e-158 563.5 422 64.5
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 3.6e-158 562.4 458 58.5
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 2.6e-156 556.2 416 63.9
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 9.8e-156 554.3 456 61.6
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 1.3e-155 553.9 427 63.9
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 3.2e-154 549.3 426 63.6
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 7.1e-154 548.1 449 62.4
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 7.1e-154 548.1 387 68.5
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 5.1e-152 542.0 566 51.8
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 4.0e-149 532.3 423 63.6
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 2.0e-148 530.0 368 68.2
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 1.1e-146 524.2 347 71.5
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.9e-146 523.5 456 59.4
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 4.1e-146 522.3 455 58.7
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 6.0e-145 518.5 401 62.8
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 5.6e-143 511.9 382 63.1
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 2.8e-142 509.6 421 57.5
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 9.3e-138 494.6 343 69.1
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 1.0e-136 491.1 370 61.9
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 1.1e-135 487.6 428 54.4
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 4.5e-132 475.7 346 68.5
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 4.9e-131 472.2 438 56.2
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 6.4e-131 471.9 418 55.3
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 1.5e-127 460.7 424 56.1
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 9.3e-122 441.4 324 66.0
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 1.4e-117 427.6 456 47.6
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 2.4e-117 426.8 469 50.7
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 1.8e-112 410.6 321 62.9
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 1.9e-106 390.6 411 48.7
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 9.3e-106 388.3 270 70.4
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 1.3e-94 351.3 255 67.1
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 2.3e-88 330.5 260 64.6
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 5.2e-80 302.8 297 50.5
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 2.6e-79 300.4 187 73.8
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 4.2e-74 283.1 184 71.7
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 4.8e-70 269.6 235 59.1
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 2.6e-63 247.3 214 58.9
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 1.8e-56 224.6 296 44.9
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 1.3e-54 218.4 169 62.1
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 4.6e-44 183.3 285 39.3
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 5.0e-43 179.9 121 70.2
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 2.6e-39 167.5 168 50.0
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 5.8e-39 166.4 96 77.1
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 4.9e-38 163.3 139 54.0
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 3.6e-33 147.1 285 38.9
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 3.1e-32 144.1 134 54.5
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 5.2e-32 143.3 121 54.5
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 5.8e-31 139.8 236 37.3
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 8.4e-30 136.0 116 54.3
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 5.4e-29 133.3 111 58.6
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 6.6e-27 126.3 453 28.9
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 3.1e-24 117.5 103 56.3
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 9.3e-21 105.9 96 54.2
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 3.5e-20 104.0 223 32.7
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 8.1e-17 92.8 77 53.2
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 1.2e-15 89.0 109 45.9
Cre09.g389400 Chlamydomonas reinhardtii HOM05D002474 ORTHO05D006727 2.4e-13 81.3 287 24.7
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 3.2e-13 80.9 53 67.9
PRCOL_00006911 Prasinoderma coloniale HOM05D002474 ORTHO05D006727 5.4e-13 80.1 482 23.2
Peaxi162Scf00036g01918 Petunia axillaris HOM05D002474 ORTHO05D006727 1.6e-12 78.6 63 54.0
Peaxi162Scf00781g00210 Petunia axillaris HOM05D002474 ORTHO05D006727 1.3e-11 75.5 56 57.1
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 3.0e-11 74.3 48 70.8
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.1e-09 68.2 40 75.0
Glyma.13G065601 Glycine max HOM05D002474 ORTHO05D006727 3.7e-09 67.4 49 65.3
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 3.1e-08 64.3 35 77.1
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 2.2e-06 58.2 35 68.6


User provided reference genes

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