Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 0.0e+00 1370.5 676 100.0
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 0.0e+00 1089.3 676 81.8
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 6.2e-307 1057.0 706 77.5
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 1.1e-306 1056.2 676 80.2
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 3.7e-267 924.9 682 70.1
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 1.2e-262 909.8 682 70.7
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 2.3e-253 879.0 686 67.2
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 1.1e-252 876.7 679 68.0
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 4.8e-251 871.3 689 66.6
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 3.1e-250 868.6 695 66.3
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 6.9e-250 867.5 692 65.3
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 1.2e-249 866.7 695 66.3
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 1.4e-247 859.8 681 67.0
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 1.6e-246 856.3 681 66.7
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 2.2e-243 845.9 684 65.8
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 9.1e-242 840.5 682 65.4
LjContig00274_ERROPOS1100000g0006521 Lotus japonicus HOM05D003691 ORTHO05D004288 3.7e-235 818.5 615 70.6
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 1.6e-233 813.1 688 62.1
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 2.5e-231 805.8 683 63.8
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 4.7e-230 801.6 693 62.5
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 1.2e-217 760.4 686 60.2
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 7.2e-215 751.1 683 59.9
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 8.0e-214 747.7 688 60.0
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 2.3e-213 746.1 686 58.6
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 3.0e-213 745.7 685 60.1
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 3.4e-212 742.3 677 60.1
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 5.7e-212 741.5 687 58.5
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.8e-210 736.5 692 57.8
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.4e-210 736.1 692 57.8
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 2.4e-210 736.1 687 57.8
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 5.4e-210 734.9 686 58.5
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 1.6e-209 733.4 690 58.1
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.9e-208 728.8 684 57.3
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 3.3e-207 725.7 686 57.0
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 4.3e-207 725.3 685 57.8
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 4.3e-207 725.3 702 56.8
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 1.2e-204 717.2 687 57.8
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 2.0e-204 716.5 688 56.4
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 3.4e-204 715.7 685 57.8
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 4.4e-204 715.3 684 56.9
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 7.5e-204 714.5 685 56.6
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 1.3e-203 713.8 685 56.6
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 2.2e-203 713.0 685 57.5
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 2.9e-203 712.6 682 56.7
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 6.4e-203 711.4 685 57.5
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 2.4e-202 709.5 691 55.6
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 2.4e-202 709.5 685 55.6
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 3.2e-202 709.1 689 56.6
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 4.1e-202 708.8 697 55.8
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 4.6e-201 705.3 685 55.9
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 6.0e-201 704.9 682 56.0
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 7.8e-201 704.5 686 57.3
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 1.1e-199 700.7 691 56.2
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.5e-199 700.3 692 55.8
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 2.5e-199 699.5 698 56.6
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 7.3e-199 698.0 694 55.6
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 2.1e-198 696.4 691 55.7
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 2.1e-198 696.4 683 55.1
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 2.8e-198 696.0 689 56.2
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 3.6e-198 695.7 688 56.1
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 3.6e-198 695.7 693 56.0
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 6.2e-198 694.9 697 55.5
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 8.9e-197 691.0 688 55.4
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 4.4e-196 688.7 696 55.3
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 2.2e-195 686.4 689 56.0
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 3.7e-195 685.6 696 55.3
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 1.9e-194 683.3 696 55.5
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 3.2e-194 682.6 697 54.9
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 1.2e-193 680.6 663 56.0
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 1.6e-193 680.2 696 54.9
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 2.1e-193 679.9 685 55.0
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 1.3e-192 677.2 691 54.4
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 1.8e-189 666.8 684 53.8
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 4.0e-189 665.6 687 55.0
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 8.9e-189 664.5 684 54.1
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 5.8e-188 661.8 681 54.9
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 9.9e-188 661.0 666 55.1
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 1.7e-187 660.2 700 54.0
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 3.7e-187 659.1 691 54.7
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 6.4e-187 658.3 677 54.8
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 3.2e-186 656.0 677 54.7
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 7.1e-186 654.8 683 54.2
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 3.9e-184 649.0 687 54.3
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 5.1e-184 648.7 681 53.5
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 5.6e-183 645.2 681 53.3
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 4.7e-182 642.1 690 54.3
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 4.7e-182 642.1 687 53.3
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 6.2e-182 641.7 687 53.4
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 1.8e-181 640.2 691 52.0
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 4.0e-181 639.0 703 51.6
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 7.6e-180 634.8 680 52.5
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 2.9e-179 632.9 678 52.5
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 1.1e-178 630.9 699 52.1
TAR626G1388 Trochodendron aralioides HOM05D003691 ORTHO05D004288 2.4e-178 629.8 623 55.7
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 2.7e-177 626.3 597 56.8
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 6.6e-176 621.7 680 52.1
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 1.9e-175 620.2 733 50.1
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 4.3e-175 619.0 683 52.1
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 1.6e-174 617.1 687 50.8
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 1.6e-174 617.1 687 51.2
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 2.4e-173 613.2 694 51.3
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 3.8e-171 605.9 713 49.4
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 1.4e-170 604.0 684 50.3
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 1.2e-169 600.9 682 51.0
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 3.3e-167 592.8 729 49.1
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 5.6e-167 592.0 702 49.1
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 4.8e-166 589.0 704 48.0
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 1.7e-163 580.5 683 49.6
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 2.2e-163 580.1 702 48.3
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 1.4e-162 577.4 682 49.3
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 2.4e-162 576.6 662 51.4
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 7.9e-161 571.6 681 49.3
Cpa.g.sc87.104 Carica papaya HOM05D003691 ORTHO05D004288 2.1e-158 563.5 520 58.8
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 1.4e-157 560.8 698 48.6
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 1.2e-156 557.8 664 50.2
BcaB06g28605 Brassica carinata HOM05D003691 ORTHO05D004288 4.9e-155 552.4 653 51.3
BcaB02g10460 Brassica carinata HOM05D003691 ORTHO05D004288 3.2e-154 549.7 510 58.4
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 1.6e-153 547.4 662 48.3
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 2.1e-150 537.0 727 46.5
HPP92_023149 Vanilla planifolia HOM05D003691 ORTHO05D004288 1.7e-147 527.3 670 47.3
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 5.0e-147 525.8 662 48.5
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 8.4e-147 525.0 519 53.6
Zm00001eb162990 Zea mays HOM05D003691 ORTHO05D004288 5.5e-146 522.3 665 47.1
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 1.2e-140 504.6 542 52.8
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 1.2e-140 504.6 676 45.1
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 4.5e-140 502.7 678 44.0
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 3.2e-138 496.5 695 44.0
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 4.3e-135 486.1 599 49.4
CiPaw.11G193000 Carya illinoinensis HOM05D003691 ORTHO05D004288 4.1e-133 479.6 534 51.3
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 1.7e-131 474.2 695 43.2
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 5.3e-125 452.6 681 43.5
C04p62100 Brassica napus HOM05D003691 ORTHO05D004288 1.3e-123 448.0 467 54.4
COL.COLO4_09704 Corchorus olitorius HOM05D003691 ORTHO05D004288 1.6e-121 441.0 505 51.3
Lalb_Chr19g0136071 Lupinus albus HOM05D003691 ORTHO05D004288 1.0e-120 438.3 373 64.3
Dinv22243 Davidia involucrata HOM05D003691 ORTHO05D004288 8.8e-120 435.3 566 47.3
BcaC02g07908 Brassica carinata HOM05D003691 ORTHO05D004288 2.4e-117 427.2 671 41.7
Gohir.A07G186000 Gossypium hirsutum HOM05D003691 ORTHO05D004288 4.5e-116 422.9 448 53.3
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 5.4e-109 399.4 602 41.4
Actinidia10811 Actinidia chinensis HOM05D003691 ORTHO05D004288 4.2e-106 389.8 447 52.6
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 6.1e-105 386.0 299 64.2
SEGI_30766 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 3.0e-104 383.6 575 42.4
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 3.1e-101 373.6 693 38.4
Lj8A171G44 Lonicera japonica HOM05D003691 ORTHO05D004288 1.5e-98 364.8 484 47.1
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 1.8e-96 357.8 688 35.8
AagrBONN_evm.TU.Sc2ySwM_228.2537 Anthoceros agrestis HOM05D003691 ORTHO05D004288 4.4e-95 353.2 693 35.5
SEGI_37895 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 8.3e-94 349.0 581 40.3
AUR62020385 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.0e-91 342.0 342 56.7
Oeu036739.1 Olea europaea HOM05D003691 ORTHO05D004288 2.3e-88 330.9 263 67.7
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 1.1e-82 312.0 805 32.7
MD03G1195700 Malus domestica HOM05D003691 ORTHO05D004288 7.3e-82 309.3 425 43.5
FAN25G2100 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.8e-80 304.7 284 58.8
Pp3c7_4280 Physcomitrium patens HOM05D003691 ORTHO05D004288 5.8e-79 299.7 698 36.0
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 8.9e-64 249.2 337 44.5
MD17G1101300 Malus domestica HOM05D003691 ORTHO05D004288 2.0e-63 248.1 263 55.1
MCO04G245 Micromonas commoda HOM05D003691 ORTHO05D004288 2.2e-62 244.6 636 34.0
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 7.8e-60 236.1 303 43.6
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 1.0e-59 235.7 419 41.1
PRCOL_00002032 Prasinoderma coloniale HOM05D003691 ORTHO05D004288 3.6e-57 227.3 718 29.8
Actinidia10812 Actinidia chinensis HOM05D003691 ORTHO05D004288 5.6e-50 203.4 226 50.4
CDE09G1127 Ceratophyllum demersum HOM05D003691 ORTHO05D004288 5.6e-42 176.8 230 48.7
Cfa026695 Carpinus fangiana HOM05D003691 ORTHO05D004288 4.9e-38 163.7 719 26.6
Sed0010458 Sechium edule HOM05D003691 ORTHO05D004288 1.9e-37 161.8 246 40.2
Lj8A171G43 Lonicera japonica HOM05D003691 ORTHO05D004288 2.8e-33 147.9 143 55.2
C04p62090 Brassica napus HOM05D003691 ORTHO05D004288 7.4e-26 123.2 133 53.4
TPR.G35222 Trifolium pratense HOM05D003691 ORTHO05D004288 6.9e-24 116.7 60 90.0
TPR.G2961 Trifolium pratense HOM05D001978 ORTHO05D003036 2.6e-23 114.8 63 87.3
MD03G1195600 Malus domestica HOM05D003691 ORTHO05D004288 1.0e-22 112.8 166 43.4
SEGI_16706 Sequoiadendron giganteum HOM05D003691 ORTHO05D017750 8.5e-22 109.8 105 56.2
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 1.8e-19 102.1 84 60.7
arahy.Tifrunner.gnm1.ann1.NAA2I0 Arachis hypogaea HOM05D003691 ORTHO05D004288 8.8e-19 99.8 61 78.7
CAN.G574.39 Capsicum annuum HOM05D003691 ORTHO05D004288 3.7e-17 94.4 90 54.4
Glyma.13G310451 Glycine max HOM05D003691 ORTHO05D004288 6.3e-17 93.6 50 82.0
SEGI_15855 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 1.4e-16 92.4 96 51.0
CAN.G574.40 Capsicum annuum HOM05D003691 ORTHO05D004288 1.4e-13 82.4 68 58.8
EL10Ac4g08622 Beta vulgaris HOM05D003691 ORTHO05D019836 7.2e-13 80.1 61 59.0
ATR0772G025 Amborella trichopoda HOM05D003691 ORTHO05D004288 4.7e-12 77.4 116 37.9
SHI10371 Sapria himalayana HOM05D003691 ORTHO05D004288 1.8e-11 75.5 90 53.3
Lj8A127T49 Lonicera japonica HOM05D003691 ORTHO05D004288 1.1e-10 72.8 76 55.3
Actinidia03601 Actinidia chinensis HOM05D003691 ORTHO05D004288 2.6e-10 71.6 56 67.9
Rhsim07G0255900 Rhododendron simsii HOM05D000234 ORTHO05D004288 9.7e-10 69.7 128 35.9
SHI10370 Sapria himalayana HOM05D000105 ORTHO05D000023 7.0e-08 63.5 53 67.9
FAN16G1928 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.2e-07 62.8 82 42.7
Cre13.g589300 Chlamydomonas reinhardtii HOM05D003691 ORTHO05D004288 5.9e-07 60.5 207 24.6
MD17G1101200 Malus domestica HOM05D003691 ORTHO05D004288 5.9e-07 60.5 102 38.2
MD17G1101000 Malus domestica HOM05D003691 ORTHO05D004288 3.8e-06 57.8 46 60.9


User provided reference genes

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