Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G42 Trifolium pratense HOM05D003698 ORTHO05D004320 3.0e-12 73.6 30 100.0
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 6.7e-12 72.4 30 96.7
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 8.7e-12 72.0 30 96.7
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.1e-11 71.6 30 96.7
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.1e-11 71.6 30 96.7
Cpa.g.sc170.35 Carica papaya HOM05D003698 ORTHO05D004320 1.1e-11 71.6 30 96.7
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 1.1e-11 71.6 30 96.7
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 1.1e-11 71.6 30 96.7
Eucgr.E00184 Eucalyptus grandis HOM05D003698 ORTHO05D004320 1.1e-11 71.6 30 96.7
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 1.1e-11 71.6 30 96.7
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 1.1e-11 71.6 30 96.7
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 1.5e-11 71.2 30 96.7
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 1.5e-11 71.2 30 96.7
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 1.5e-11 71.2 30 96.7
Haze_05811 Corylus avellana HOM05D003698 ORTHO05D004320 1.5e-11 71.2 30 96.7
Haze_15453 Corylus avellana HOM05D003698 ORTHO05D004320 1.5e-11 71.2 30 96.7
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 1.5e-11 71.2 30 96.7
CANSAT11G2537 Cannabis sativa HOM05D003698 ORTHO05D004320 1.9e-11 70.9 30 93.3
CANSAT25G0181 Cannabis sativa HOM05D003698 ORTHO05D004320 1.9e-11 70.9 30 93.3
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 1.9e-11 70.9 30 93.3
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 1.9e-11 70.9 30 93.3
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 2.5e-11 70.5 30 93.3
ClCG03G012620 Citrullus lanatus HOM05D003698 ORTHO05D004320 2.5e-11 70.5 30 93.3
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 2.5e-11 70.5 30 93.3
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 2.5e-11 70.5 30 93.3
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 3.3e-11 70.1 30 93.3
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 3.3e-11 70.1 30 93.3
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 3.3e-11 70.1 30 93.3
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 3.3e-11 70.1 30 93.3
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 3.3e-11 70.1 30 93.3
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 3.3e-11 70.1 30 93.3
CSS0016921 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 3.3e-11 70.1 30 93.3
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 3.3e-11 70.1 30 93.3
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 3.3e-11 70.1 30 93.3
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 3.3e-11 70.1 30 93.3
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 3.3e-11 70.1 30 93.3
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 3.3e-11 70.1 30 93.3
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 3.3e-11 70.1 30 93.3
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 3.3e-11 70.1 30 93.3
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 3.3e-11 70.1 30 93.3
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 3.3e-11 70.1 30 93.3
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 4.3e-11 69.7 30 93.3
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 4.3e-11 69.7 30 93.3
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 4.3e-11 69.7 30 93.3
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 4.3e-11 69.7 30 93.3
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 4.3e-11 69.7 30 93.3
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 4.3e-11 69.7 30 93.3
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 4.3e-11 69.7 30 93.3
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 5.6e-11 69.3 29 96.6
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 5.6e-11 69.3 30 93.3
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 5.6e-11 69.3 30 93.3
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 90.0
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 90.0
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 90.0
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 90.0
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 90.0
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 90.0
FAN03G0966 Fragaria x ananassa HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 90.0
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 90.0
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 7.4e-11 68.9 30 90.0
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 93.3
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 93.3
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 90.0
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 90.0
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 93.3
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 90.0
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 93.3
Nn6g33536 Nelumbo nucifera HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 93.3
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 90.0
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 90.0
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 90.0
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 93.3
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 86.7
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 90.0
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 90.0
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 7.4e-11 68.9 30 90.0
CAN.G134.78 Capsicum annuum HOM05D003698 ORTHO05D004320 9.6e-11 68.6 30 90.0
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 9.6e-11 68.6 30 93.3
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 9.6e-11 68.6 30 90.0
Lj9A580G54 Lonicera japonica HOM05D003698 ORTHO05D004320 9.6e-11 68.6 30 90.0
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 9.6e-11 68.6 30 90.0
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 9.6e-11 68.6 30 90.0
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 9.6e-11 68.6 30 90.0
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 9.6e-11 68.6 30 90.0
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 9.6e-11 68.6 30 90.0
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 9.6e-11 68.6 30 90.0
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 9.6e-11 68.6 30 90.0
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 9.6e-11 68.6 30 90.0
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 9.6e-11 68.6 30 90.0
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 9.6e-11 68.6 30 90.0
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 9.6e-11 68.6 30 90.0
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 9.6e-11 68.6 30 90.0
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 9.6e-11 68.6 30 90.0
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 9.6e-11 68.6 30 90.0
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 1.3e-10 68.2 30 90.0
Prupe.8G033900 Prunus persica HOM05D003698 ORTHO05D004320 1.3e-10 68.2 30 90.0
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 1.3e-10 68.2 30 90.0
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 1.6e-10 67.8 29 89.7
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.6e-10 67.8 30 86.7
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.6e-10 67.8 30 86.7
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 1.6e-10 67.8 30 86.7
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 1.6e-10 67.8 29 89.7
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 1.6e-10 67.8 30 90.0
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 1.6e-10 67.8 30 90.0
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 1.6e-10 67.8 30 90.0
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 2.1e-10 67.4 30 86.7
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 2.1e-10 67.4 30 86.7
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 2.1e-10 67.4 30 83.3
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 2.1e-10 67.4 30 86.7
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 2.8e-10 67.0 30 90.0
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 2.8e-10 67.0 30 90.0
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 2.8e-10 67.0 30 90.0
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 2.8e-10 67.0 30 90.0
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 4.8e-10 66.2 30 90.0
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 4.8e-10 66.2 29 86.2
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 4.8e-10 66.2 30 86.7
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.8e-10 66.2 30 90.0
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 6.2e-10 65.9 30 90.0
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 83.3
SEGI_40114 Sequoiadendron giganteum HOM05D003698 ORTHO05D004320 8.1e-10 65.5 31 90.3
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 8.1e-10 65.5 30 86.7
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 1.1e-09 65.1 30 83.3
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 1.1e-09 65.1 30 83.3
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 1.4e-09 64.7 29 82.8
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 1.8e-09 64.3 30 83.3
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 1.8e-09 64.3 30 83.3
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 2.4e-09 63.9 30 83.3
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 2.4e-09 63.9 30 83.3
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 5.3e-09 62.8 30 80.0
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 6.9e-09 62.4 30 80.0
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 6.9e-09 62.4 30 80.0
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 9.0e-09 62.0 30 80.0
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 1.2e-08 61.6 31 83.9
AUR62013874 Chenopodium quinoa HOM05D003698 ORTHO05D004320 1.2e-08 61.6 30 80.0
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 1.2e-08 61.6 30 80.0
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 1.2e-08 61.6 30 80.0
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 3.4e-08 60.1 31 80.6
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 4.5e-08 59.7 25 96.0
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 1.3e-07 58.2 31 74.2
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 2.2e-07 57.4 31 74.2
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 3.8e-07 56.6 31 74.2
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 1.1e-06 55.1 31 67.7
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 3.2e-06 53.5 31 64.5
CSS0047600 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 5.5e-06 52.8 24 79.2


User provided reference genes

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