Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 4.0e-63 244.6 123 100.0
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 2.7e-51 205.3 123 87.0
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 1.5e-46 189.5 124 81.5
Medtr2g088320 Medicago truncatula HOM05D007398 ORTHO05D004912 1.0e-42 176.8 126 77.8
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 2.8e-32 142.1 114 66.7
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 3.1e-31 138.7 138 60.1
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 2.0e-30 136.0 125 60.8
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 3.8e-29 131.7 129 58.1
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 2.5e-28 129.0 128 56.2
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 7.1e-28 127.5 138 57.2
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 3.7e-24 115.2 126 55.6
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 3.7e-24 115.2 126 55.6
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 1.4e-23 113.2 126 54.8
Lalb_Chr19g0135871 Lupinus albus HOM05D007398 ORTHO05D004912 1.4e-23 113.2 130 54.6
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 2.4e-23 112.5 125 52.0
FAN10G4171 Fragaria x ananassa HOM05D007398 ORTHO05D004912 4.1e-23 111.7 123 54.5
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 9.0e-23 110.5 126 54.8
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 1.5e-22 109.8 131 51.9
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 1.5e-22 109.8 104 56.7
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 1.5e-22 109.8 104 56.7
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 4.5e-22 108.2 112 56.2
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 4.5e-22 108.2 126 50.0
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 4.5e-22 108.2 126 54.0
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 5.9e-22 107.8 126 53.2
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 7.6e-22 107.5 123 52.0
Atru.chr6.3184 Acer truncatum HOM05D007398 ORTHO05D004912 1.0e-21 107.1 120 52.5
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 2.9e-21 105.5 125 56.0
Atru.chr6.3183 Acer truncatum HOM05D007398 ORTHO05D004912 5.0e-21 104.8 120 51.7
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 6.5e-21 104.4 105 57.1
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 8.5e-21 104.0 121 45.5
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.1e-20 103.6 104 55.8
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 1.9e-20 102.8 128 52.3
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 3.2e-20 102.1 108 53.7
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 9.3e-20 100.5 93 58.1
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 2.1e-19 99.4 116 52.6
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 3.6e-19 98.6 134 51.5
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 4.6e-19 98.2 100 57.0
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 7.9e-19 97.4 106 53.8
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.8e-18 96.3 105 51.4
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 2.3e-18 95.9 124 47.6
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 3.0e-18 95.5 129 49.6
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 5.1e-18 94.7 107 52.3
Lj4g0016348 Lotus japonicus HOM05D007398 ORTHO05D004912 1.9e-17 92.8 119 41.2
Rhsim06G0162600 Rhododendron simsii HOM05D007398 ORTHO05D004912 3.3e-17 92.0 130 42.3
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 3.3e-17 92.0 119 51.3
Gohir.A12G157600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 5.7e-17 91.3 110 53.6
Lj3g0008615 Lotus japonicus HOM05D007398 ORTHO05D004912 7.4e-17 90.9 122 49.2
Gorai.008G173500 Gossypium raimondii HOM05D007398 ORTHO05D004912 9.7e-17 90.5 110 54.5
Lsat_1_v5_gn_7_92201 Lactuca sativa HOM05D007398 ORTHO05D004912 9.7e-17 90.5 128 41.4
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 2.2e-16 89.4 89 58.4
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 2.8e-16 89.0 118 46.6
Gohir.D12G159800 Gossypium hirsutum HOM05D007398 ORTHO05D004912 8.2e-16 87.4 110 53.6
Duzib251G0280 Durio zibethinus HOM05D007398 ORTHO05D004912 1.8e-15 86.3 101 50.5
HanXRQChr03g0069481 Helianthus annuus HOM05D007398 ORTHO05D004912 1.2e-14 83.6 115 45.2
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.6e-14 82.4 101 49.5
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 3.4e-14 82.0 89 53.9
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 3.4e-14 82.0 97 51.5
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 4.5e-14 81.6 102 50.0
Sed0017131 Sechium edule HOM05D007398 ORTHO05D004912 5.9e-14 81.3 105 49.5
Eucgr.K00797 Eucalyptus grandis HOM05D007398 ORTHO05D004912 7.7e-14 80.9 128 43.8
ClCG02G008700 Citrullus lanatus HOM05D007398 ORTHO05D004912 1.3e-13 80.1 101 46.5
Cc05_g04620 Coffea canephora HOM05D007398 ORTHO05D004912 2.9e-13 79.0 124 42.7
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 3.8e-13 78.6 108 44.4
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 3.8e-13 78.6 108 44.4
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 3.8e-13 78.6 94 51.1
Sed0025347 Sechium edule HOM05D007398 ORTHO05D004912 5.0e-13 78.2 104 42.3
ECA236G3422 Erigeron canadensis HOM05D007398 ORTHO05D004912 8.5e-13 77.4 137 41.6
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 8.5e-13 77.4 127 45.7
TWI18G0787 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 1.1e-12 77.0 112 44.6
Duzib248G0799 Durio zibethinus HOM05D007398 ORTHO05D004912 1.4e-12 76.6 119 44.5
Aqoxy1G02145 Aquilegia oxysepala HOM05D007398 ORTHO05D004912 1.9e-12 76.3 132 40.9
Sed0017095 Sechium edule HOM05D007398 ORTHO05D004912 3.2e-12 75.5 123 43.9
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 5.5e-12 74.7 95 47.4
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 9.4e-12 73.9 106 44.3
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 1.2e-11 73.6 84 48.8
ECA240G1365 Erigeron canadensis HOM05D007398 ORTHO05D004912 2.1e-11 72.8 94 48.9
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.1e-11 72.8 101 46.5
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 2.7e-11 72.4 106 45.3
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.7e-11 72.4 107 43.9
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 3.6e-11 72.0 107 43.9
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 3.6e-11 72.0 107 43.9
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 7.9e-11 70.9 113 42.5
Gorai.012G184400 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.4e-10 70.1 101 45.5
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 2.3e-10 69.3 107 43.0
Oeu041920.1 Olea europaea HOM05D007398 ORTHO05D004912 3.0e-10 68.9 128 39.1
Lsat_1_v5_gn_9_106500 Lactuca sativa HOM05D007398 ORTHO05D004912 5.1e-10 68.2 128 39.8
QL05p073115 Quercus lobata HOM05D007398 ORTHO05D004912 1.1e-09 67.0 90 48.9
PSO541G0095 Papaver somniferum HOM05D007398 ORTHO05D004912 4.4e-09 65.1 118 35.6
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 5.7e-09 64.7 111 40.5
HanXRQChr16g0504931 Helianthus annuus HOM05D007398 ORTHO05D004912 9.7e-09 63.9 131 35.9
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 1.3e-08 63.5 119 41.2
QL05p073125 Quercus lobata HOM05D007398 ORTHO05D004912 1.3e-08 63.5 90 47.8
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 3.7e-08 62.0 88 46.6
Migut.H01572 Erythranthe guttata HOM05D011575 ORTHO05D004912 6.3e-08 61.2 86 40.7
SalBow8G3401 Salvia bowleyana HOM05D011575 ORTHO05D004912 6.3e-08 61.2 89 38.2
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 8.2e-08 60.8 110 38.2
Migut.M01320 Erythranthe guttata HOM05D011575 ORTHO05D004912 8.2e-08 60.8 92 40.2
Os04g0624701 Oryza sativa ssp. japonica HOM05D007398 ORTHO05D004912 8.2e-08 60.8 124 37.9
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 1.1e-07 60.5 90 43.3
Zm00001eb273730 Zea mays HOM05D007398 ORTHO05D004912 1.1e-07 60.5 115 38.3
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 1.8e-07 59.7 119 38.7
VMungo0647G2151 Vigna mungo HOM05D011727 ORTHO05D004912 1.8e-07 59.7 92 43.5
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 2.4e-07 59.3 124 36.3
Glyma.14G163600 Glycine max HOM05D011727 ORTHO05D004912 3.1e-07 58.9 88 43.2
Aa31LG3G10880 Aethionema arabicum HOM05D009587 ORTHO05D004912 4.1e-07 58.5 99 39.4
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 4.1e-07 58.5 130 34.6
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 5.3e-07 58.2 117 40.2
BolC3t14094H Brassica oleracea HOM05D009587 ORTHO05D004912 7.0e-07 57.8 118 40.7
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 1.2e-06 57.0 88 43.2
BcaB01g04338 Brassica carinata HOM05D009587 ORTHO05D004912 1.2e-06 57.0 117 38.5
Phvul.008G166200 Phaseolus vulgaris HOM05D011727 ORTHO05D004912 1.2e-06 57.0 92 40.2
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 2.0e-06 56.2 95 40.0
MSTRG.7209 Avicennia marina HOM05D011575 ORTHO05D004912 2.0e-06 56.2 88 38.6
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 2.0e-06 56.2 134 34.3
Zm00001eb070220 Zea mays HOM05D007398 ORTHO05D004912 2.0e-06 56.2 133 34.6
Haze_06802 Corylus avellana HOM05D061810 ORTHO05D004912 2.6e-06 55.8 86 44.2
Glyma.13G082600 Glycine max HOM05D011727 ORTHO05D004912 3.4e-06 55.5 100 43.0
Sc16g0005970 Simmondsia chinensis HOM05D007398 ORTHO05D004912 3.4e-06 55.5 110 39.1
Oeu002741.1 Olea europaea HOM05D011575 ORTHO05D004912 4.5e-06 55.1 86 38.4
Potri.006G052300 Populus trichocarpa HOM05D007398 ORTHO05D004912 4.5e-06 55.1 96 40.6
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 7.7e-06 54.3 87 41.4
FAN21G2105 Fragaria x ananassa HOM05D011727 ORTHO05D004912 7.7e-06 54.3 90 44.4


User provided reference genes

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