Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 6.3e-50 200.3 90 100.0
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 7.3e-46 186.8 90 94.4
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 1.4e-44 182.6 90 91.1
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 5.2e-44 180.6 91 91.2
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 8.9e-44 179.9 91 89.0
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 8.9e-44 179.9 91 89.0
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 8.9e-44 179.9 91 89.0
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 8.9e-44 179.9 91 89.0
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 5.8e-43 177.2 89 88.8
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 7.5e-43 176.8 90 88.9
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 8.3e-42 173.3 90 85.6
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 2.0e-40 168.7 90 84.4
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 3.5e-40 167.9 90 85.6
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 6.0e-40 167.2 90 85.6
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 1.0e-39 166.4 90 86.7
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 1.0e-39 166.4 90 86.7
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 1.3e-39 166.0 90 85.6
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 1.7e-39 165.6 82 87.8
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 2.3e-39 165.2 90 85.6
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 3.9e-39 164.5 90 84.4
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 3.9e-39 164.5 90 83.3
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 3.9e-39 164.5 90 83.3
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 3.9e-39 164.5 90 83.3
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 6.6e-39 163.7 90 85.6
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 8.6e-39 163.3 90 82.2
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 1.9e-38 162.2 90 82.2
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 2.5e-38 161.8 90 85.6
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 2.5e-38 161.8 90 85.6
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 2.5e-38 161.8 89 82.0
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 3.3e-38 161.4 90 85.6
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 3.3e-38 161.4 90 85.6
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 3.3e-38 161.4 90 85.6
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 4.3e-38 161.0 89 85.4
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 4.3e-38 161.0 89 85.4
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 4.3e-38 161.0 89 85.4
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 4.3e-38 161.0 89 85.4
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 4.3e-38 161.0 87 85.1
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 7.3e-38 160.2 90 82.2
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 7.3e-38 160.2 90 82.2
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 7.3e-38 160.2 89 79.8
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 7.3e-38 160.2 89 79.8
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 9.5e-38 159.8 90 84.4
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 9.5e-38 159.8 90 84.4
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 9.5e-38 159.8 90 84.4
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 9.5e-38 159.8 90 84.4
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 9.5e-38 159.8 90 82.2
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 9.5e-38 159.8 86 81.4
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 9.5e-38 159.8 90 82.2
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 1.2e-37 159.5 85 81.2
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 1.2e-37 159.5 89 85.4
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 1.6e-37 159.1 87 83.9
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.6e-37 159.1 87 80.5
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 2.1e-37 158.7 89 84.3
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 2.8e-37 158.3 82 85.4
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 2.8e-37 158.3 90 84.4
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 3.6e-37 157.9 90 82.2
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 4.7e-37 157.5 90 81.1
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 8.0e-37 156.8 90 80.0
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 8.0e-37 156.8 90 80.0
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 8.0e-37 156.8 82 81.7
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.1e-36 156.4 90 81.1
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 2.3e-36 155.2 89 79.8
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 2.3e-36 155.2 87 81.6
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 4.0e-36 154.5 87 80.5
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 4.0e-36 154.5 87 80.5
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 5.2e-36 154.1 80 85.0
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 6.8e-36 153.7 90 80.0
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 8.9e-36 153.3 87 81.6
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 1.2e-35 152.9 89 78.7
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 1.5e-35 152.5 84 82.1
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 2.0e-35 152.1 88 78.4
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 2.6e-35 151.8 82 82.9
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 3.4e-35 151.4 77 83.1
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 4.4e-35 151.0 84 81.0
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 4.4e-35 151.0 90 78.9
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 5.8e-35 150.6 77 83.1
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 7.5e-35 150.2 85 78.8
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 7.5e-35 150.2 85 78.8
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 7.5e-35 150.2 77 81.8
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 7.5e-35 150.2 89 77.5
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 9.8e-35 149.8 90 78.9
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 2.2e-34 148.7 82 80.5
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 4.9e-34 147.5 64 100.0
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 6.4e-34 147.1 82 81.7
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 1.4e-33 146.0 77 80.5
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 1.9e-33 145.6 85 77.6
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 1.9e-33 145.6 85 77.6
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 2.4e-33 145.2 87 79.3
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 3.2e-33 144.8 86 76.7
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 4.1e-33 144.4 82 78.0
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 4.1e-33 144.4 87 75.9
Hund01114 Selenicereus undatus HOM05D006996 ORTHO05D008961 5.4e-33 144.1 90 77.8
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 7.0e-33 143.7 90 77.8
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 2.1e-32 142.1 110 63.6
AUR62000730 Chenopodium quinoa HOM05D006996 ORTHO05D008961 1.5e-30 136.0 89 71.9
AUR62008544 Chenopodium quinoa HOM05D006996 ORTHO05D008961 2.5e-30 135.2 89 73.0
AUR62021549 Chenopodium quinoa HOM05D006996 ORTHO05D008961 4.3e-30 134.4 89 70.8
SalBow7G3715 Salvia bowleyana HOM05D006996 ORTHO05D008961 4.3e-30 134.4 82 78.0
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 8.9e-28 126.7 68 79.4
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 1.1e-25 119.8 65 83.1
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 1.1e-25 119.8 61 83.6
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 5.4e-25 117.5 62 82.3
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 4.6e-24 114.4 61 75.4
COL.COLO4_06384 Corchorus olitorius HOM05D006996 ORTHO05D008961 4.0e-20 101.3 52 88.5
TAR676G0001 Trochodendron aralioides HOM05D006996 ORTHO05D008961 8.9e-20 100.1 59 76.3
Mapoly0024s0016 Marchantia polymorpha HOM05D006996 ORTHO05D008961 1.2e-19 99.8 83 56.6
TPR.G35081 Trifolium pratense HOM05D006996 ORTHO05D048925 3.5e-16 88.2 41 95.1
MCO13G082 Micromonas commoda HOM05D006996 ORTHO05D008961 1.1e-14 83.2 58 63.8
SEGI_13346 Sequoiadendron giganteum HOM05D006996 ORTHO05D008961 4.3e-14 81.3 57 59.6
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 5.3e-12 74.3 42 81.0
FAN09G4817 Fragaria x ananassa HOM05D006996 ORTHO05D008961 2.2e-10 68.9 38 78.9
CSS0002917 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 8.4e-10 67.0 40 72.5
CSS0018135 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.9e-09 65.9 40 70.0


User provided reference genes

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