Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4168 Trifolium pratense HOM05D000370 ORTHO05D007301 6.0e-61 237.3 116 100.0
TPR.G18145 Trifolium pratense HOM05D000370 ORTHO05D007301 1.3e-26 123.2 74 83.8
Psat2g177080 Pisum sativum HOM05D000370 ORTHO05D007301 3.1e-25 118.6 74 82.4
Medtr5g012790 Medicago truncatula HOM05D000370 ORTHO05D007301 1.0e-23 113.6 76 80.3
arahy.Tifrunner.gnm1.ann1.CEL5PM Arachis hypogaea HOM05D000370 ORTHO05D007301 4.7e-21 104.8 74 73.0
arahy.Tifrunner.gnm1.ann1.LB9ANX Arachis hypogaea HOM05D000370 ORTHO05D007301 4.7e-21 104.8 74 73.0
Glyma.05G060400 Glycine max HOM05D000370 ORTHO05D007301 1.2e-19 100.1 71 71.8
Lalb_Chr09g0324341 Lupinus albus HOM05D000370 ORTHO05D007301 2.6e-19 99.0 75 68.0
Glyma.17G142700 Glycine max HOM05D000370 ORTHO05D007301 3.4e-19 98.6 71 71.8
Lj2g0024916 Lotus japonicus HOM05D000370 ORTHO05D007301 9.7e-19 97.1 73 72.6
QL12p011752 Quercus lobata HOM05D000370 ORTHO05D007301 1.7e-18 96.3 68 73.5
VMungo0251G2833 Vigna mungo HOM05D000370 ORTHO05D007301 2.2e-18 95.9 71 69.0
Sabra01G0134200 Salix brachista HOM05D000370 ORTHO05D007301 6.3e-18 94.4 73 68.5
Cfa012733 Carpinus fangiana HOM05D000370 ORTHO05D007301 1.1e-17 93.6 68 72.1
Haze_07901 Corylus avellana HOM05D000370 ORTHO05D007301 1.1e-17 93.6 71 70.4
Glyma.01G208300 Glycine max HOM05D000370 ORTHO05D007301 1.4e-17 93.2 74 71.6
Phvul.003G221500 Phaseolus vulgaris HOM05D000370 ORTHO05D007301 1.4e-17 93.2 71 67.6
CiPaw.12G051500 Carya illinoinensis HOM05D003141 ORTHO05D003633 3.1e-17 92.0 68 70.6
Manes.01G081500 Manihot esculenta HOM05D000370 ORTHO05D007301 4.1e-17 91.7 70 67.1
Potri.001G157200 Populus trichocarpa HOM05D000370 ORTHO05D007301 1.2e-16 90.1 73 64.4
VMungo1215G1285 Vigna mungo HOM05D000370 ORTHO05D007301 1.2e-16 90.1 84 63.1
Cpa.g.sc29.174 Carica papaya HOM05D000370 ORTHO05D007301 1.6e-16 89.7 74 62.2
Ciclev10019315m.g Citrus clementina HOM05D000370 ORTHO05D007301 4.5e-16 88.2 73 63.0
Prupe.5G067800 Prunus persica HOM05D000370 ORTHO05D007301 4.5e-16 88.2 68 70.6
MD06G1057000 Malus domestica HOM05D000370 ORTHO05D007301 5.9e-16 87.8 68 69.1
CANSAT21G1556 Cannabis sativa HOM05D000370 ORTHO05D007301 7.7e-16 87.4 62 74.2
Gorai.008G234400 Gossypium raimondii HOM05D000370 ORTHO05D007301 1.7e-15 86.3 73 65.8
FAN08G3393 Fragaria x ananassa HOM05D000370 ORTHO05D007301 5.0e-15 84.7 65 67.7
Nn6g33921 Nelumbo nucifera HOM05D000370 ORTHO05D007301 5.0e-15 84.7 72 62.5
Gohir.A12G216200 Gossypium hirsutum HOM05D000370 ORTHO05D007301 6.5e-15 84.3 73 64.4
Carub.0008s0040 Capsella rubella HOM05D000370 ORTHO05D007301 8.5e-15 84.0 80 58.8
Duzib205G0882 Durio zibethinus HOM05D000370 ORTHO05D007301 8.5e-15 84.0 73 64.4
PGSC0003DMG400004820 Solanum tuberosum HOM05D000370 ORTHO05D007301 1.1e-14 83.6 63 66.7
THA.LOC104798362 Tarenaya hassleriana HOM05D000370 ORTHO05D007301 1.1e-14 83.6 63 69.8
Thecc.03G249700 Theobroma cacao HOM05D000370 ORTHO05D007301 1.1e-14 83.6 73 64.4
FvH4_5g19100 Fragaria vesca HOM05D000370 ORTHO05D007301 1.5e-14 83.2 65 67.7
FAN18G4132 Fragaria x ananassa HOM05D000370 ORTHO05D007301 1.5e-14 83.2 65 67.7
Rhsim07G0109900 Rhododendron simsii HOM05D000370 ORTHO05D007301 1.5e-14 83.2 70 61.4
Aa31csc39G70 Aethionema arabicum HOM05D000370 ORTHO05D007301 1.9e-14 82.8 63 68.3
CAN.G1058.42 Capsicum annuum HOM05D000370 ORTHO05D007301 1.9e-14 82.8 63 66.7
FAN13G2645 Fragaria x ananassa HOM05D000370 ORTHO05D007301 1.9e-14 82.8 61 70.5
Solyc08g078520.4 Solanum lycopersicum HOM05D000370 ORTHO05D007301 1.9e-14 82.8 63 66.7
Nitab4.5_0002289g0030 Nicotiana tabacum HOM05D000370 ORTHO05D007301 2.5e-14 82.4 63 65.1
Cc08_g12300 Coffea canephora HOM05D000370 ORTHO05D007301 3.2e-14 82.0 55 74.5
FAN04G0029 Fragaria x ananassa HOM05D000370 ORTHO05D007301 3.2e-14 82.0 65 66.2
Nitab4.5_0001381g0140 Nicotiana tabacum HOM05D000370 ORTHO05D007301 3.2e-14 82.0 63 65.1
Atru.chr9.1294 Acer truncatum HOM05D000370 ORTHO05D007301 4.2e-14 81.6 73 63.0
AT5G47380 Arabidopsis thaliana HOM05D000370 ORTHO05D007301 4.2e-14 81.6 66 65.2
PGR042G1217 Punica granatum HOM05D000370 ORTHO05D007301 7.2e-14 80.9 67 62.7
Aqoxy7G00791 Aquilegia oxysepala HOM05D000370 ORTHO05D007301 9.4e-14 80.5 70 62.9
TWI81G0014 Tripterygium wilfordii HOM05D000370 ORTHO05D007301 9.4e-14 80.5 73 57.5
Actinidia31517 Actinidia chinensis HOM05D000370 ORTHO05D007301 1.2e-13 80.1 62 67.7
Dinv39156 Davidia involucrata HOM05D000370 ORTHO05D007301 1.2e-13 80.1 65 63.1
Peaxi162Scf00209g00020 Petunia axillaris HOM05D000370 ORTHO05D007301 1.2e-13 80.1 63 63.5
DCAR_008497 Daucus carota HOM05D000370 ORTHO05D007301 1.6e-13 79.7 63 66.7
Duzib068G1150 Durio zibethinus HOM05D000370 ORTHO05D007301 1.6e-13 79.7 73 61.6
GSVIVG01004717001 Vitis vinifera HOM05D000370 ORTHO05D007301 1.6e-13 79.7 62 66.1
vmacro14076 Vaccinium macrocarpon HOM05D000370 ORTHO05D007301 2.1e-13 79.3 58 69.0
RcHm_v2.0_Chr7g0203571 Rosa chinensis HOM05D000370 ORTHO05D007301 2.7e-13 79.0 65 64.6
CSS0022932 Camellia sinensis var. sinensis HOM05D000370 ORTHO05D007301 3.6e-13 78.6 63 66.7
CsaV3_5G004270 Cucumis sativus L. HOM05D000370 ORTHO05D007301 3.6e-13 78.6 65 63.1
Eucgr.E00412 Eucalyptus grandis HOM05D000370 ORTHO05D007301 3.6e-13 78.6 76 57.9
TAR375G0433 Trochodendron aralioides HOM05D000370 ORTHO05D007301 4.7e-13 78.2 71 60.6
COL.COLO4_37159 Corchorus olitorius HOM05D000370 ORTHO05D007301 6.1e-13 77.8 74 62.2
Gohir.A08G169500 Gossypium hirsutum HOM05D000370 ORTHO05D007301 6.1e-13 77.8 73 63.0
Lj2A219T46 Lonicera japonica HOM05D000370 ORTHO05D007301 6.1e-13 77.8 54 75.9
Nn1g00963 Nelumbo nucifera HOM05D000370 ORTHO05D007301 8.0e-13 77.4 51 76.5
ClCG00G002030 Citrullus lanatus HOM05D000370 ORTHO05D007301 1.4e-12 76.6 65 63.1
ClCG01G004100 Citrullus lanatus HOM05D000370 ORTHO05D007301 1.4e-12 76.6 65 63.1
Oeu024048.1 Olea europaea HOM05D000370 ORTHO05D007301 1.4e-12 76.6 63 63.5
CARHR174000 Cardamine hirsuta HOM05D000370 ORTHO05D007301 1.8e-12 76.3 63 69.8
MELO3C005527.2 Cucumis melo HOM05D000370 ORTHO05D007301 1.8e-12 76.3 65 61.5
AL8G10660 Arabidopsis lyrata HOM05D000370 ORTHO05D007301 2.3e-12 75.9 66 60.6
CSS0011027 Camellia sinensis var. sinensis HOM05D000370 ORTHO05D007301 3.0e-12 75.5 63 65.1
PSO339G4445 Papaver somniferum HOM05D000370 ORTHO05D007301 3.0e-12 75.5 75 56.0
BcaB07g30776 Brassica carinata HOM05D000370 ORTHO05D007301 6.8e-12 74.3 58 67.2
Hund14554 Selenicereus undatus HOM05D000370 ORTHO05D007301 1.2e-11 73.6 51 72.5
AUR62019957 Chenopodium quinoa HOM05D000370 ORTHO05D007301 3.4e-11 72.0 54 70.4
Thhalv10000820m.g Eutrema salsugineum HOM05D000370 ORTHO05D007301 3.4e-11 72.0 62 61.3
A09p23010 Brassica napus HOM05D000370 ORTHO05D007301 4.4e-11 71.6 58 65.5
Sp2g12100 Schrenkiella parvula HOM05D000370 ORTHO05D007301 4.4e-11 71.6 65 58.5
BraA09t37905Z Brassica rapa HOM05D000370 ORTHO05D007301 5.7e-11 71.2 58 65.5
AUR62007093 Chenopodium quinoa HOM05D000370 ORTHO05D007301 7.5e-11 70.9 64 59.4
Gorai.004G197700 Gossypium raimondii HOM05D000370 ORTHO05D007301 7.5e-11 70.9 74 58.1
EL10Ac5g12385 Beta vulgaris HOM05D000370 ORTHO05D007301 1.3e-10 70.1 58 65.5
Actinidia10836 Actinidia chinensis HOM05D000370 ORTHO05D007301 1.7e-10 69.7 59 67.8
HanXRQChr16g0506201 Helianthus annuus HOM05D000370 ORTHO05D007301 2.2e-10 69.3 63 57.1
Lsat_1_v5_gn_6_17960 Lactuca sativa HOM05D000370 ORTHO05D007301 2.2e-10 69.3 69 53.6
Gohir.D08G187800 Gossypium hirsutum HOM05D000370 ORTHO05D007301 2.8e-10 68.9 74 56.8
Os10g0559800 Oryza sativa ssp. japonica HOM05D000370 ORTHO05D007301 3.7e-10 68.6 51 66.7
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 4.8e-10 68.2 68 54.4
SEGI_24322 Sequoiadendron giganteum HOM05D000370 ORTHO05D007301 4.8e-10 68.2 53 67.9
ATR0317G128 Amborella trichopoda HOM05D000370 ORTHO05D007301 6.3e-10 67.8 71 50.7
HPP92_027284 Vanilla planifolia HOM05D000370 ORTHO05D007301 6.3e-10 67.8 72 52.8
BolC9t55835H Brassica oleracea HOM05D000370 ORTHO05D007301 1.1e-09 67.0 74 52.7
BcaC04g21629 Brassica carinata HOM05D000370 ORTHO05D007301 1.4e-09 66.6 75 53.3
C09p29720 Brassica napus HOM05D000370 ORTHO05D007301 1.4e-09 66.6 75 53.3
Ca_24584_v3 Cicer arietinum L. HOM05D000370 ORTHO05D007301 2.4e-09 65.9 46 76.1
HPP92_022472 Vanilla planifolia HOM05D000370 ORTHO05D007301 9.1e-09 63.9 52 63.5
Aa31csc39G50 Aethionema arabicum HOM05D000370 ORTHO05D007301 5.9e-08 61.2 54 63.0
Manes.02G040700 Manihot esculenta HOM05D000370 ORTHO05D007301 1.3e-07 60.1 67 52.2
GSVIVG01001955001 Vitis vinifera HOM05D000370 ORTHO05D007301 2.3e-07 59.3 38 78.9
Sc01g0008390 Simmondsia chinensis HOM05D000370 ORTHO05D007301 1.5e-06 56.6 39 71.8


User provided reference genes

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