Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 3.0e-167 592.8 613 100.0
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 2.7e-83 313.9 197 83.2
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 2.1e-75 287.7 217 70.0
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 5.4e-68 263.1 237 63.7
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 3.5e-67 260.4 189 73.0
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 8.1e-64 249.2 247 56.3
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 1.4e-55 221.9 231 56.3
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 6.7e-42 176.4 223 48.4
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 7.2e-36 156.4 197 46.7
Psat3g199520 Pisum sativum HOM05D004824 ORTHO05D003903 7.2e-36 156.4 103 78.6
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 3.9e-34 150.6 201 44.3
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 5.1e-34 150.2 148 53.4
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 8.7e-34 149.4 220 44.5
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 9.7e-33 146.0 196 44.9
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 3.7e-32 144.1 192 43.2
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 1.8e-31 141.7 146 52.7
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 4.5e-30 137.1 176 48.9
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 3.6e-27 127.5 190 38.4
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 4.6e-27 127.1 193 46.1
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 4.6e-27 127.1 175 46.9
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 7.9e-27 126.3 212 38.7
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 7.9e-27 126.3 194 41.2
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 3.9e-26 124.0 189 37.6
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 8.8e-26 122.9 174 42.5
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 1.1e-25 122.5 215 38.6
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 1.1e-25 122.5 189 40.7
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 1.1e-25 122.5 169 47.9
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 2.0e-25 121.7 184 40.2
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 2.0e-25 121.7 208 38.0
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 7.4e-25 119.8 191 37.2
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 9.7e-25 119.4 171 43.3
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 9.7e-25 119.4 174 42.0
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 1.7e-24 118.6 216 37.5
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 2.2e-24 118.2 216 37.5
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 2.2e-24 118.2 178 38.8
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 3.7e-24 117.5 216 37.5
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 8.2e-24 116.3 206 37.9
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 8.2e-24 116.3 180 38.3
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 1.1e-23 115.9 160 41.2
Medtr7g011520 Medicago truncatula HOM05D004824 ORTHO05D003903 1.4e-23 115.5 125 52.8
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 1.8e-23 115.2 154 41.6
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 1.2e-22 112.5 143 43.4
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 2.0e-22 111.7 151 43.0
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 2.0e-22 111.7 140 45.7
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 2.6e-22 111.3 129 48.1
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 3.4e-22 110.9 203 38.4
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 4.5e-22 110.5 150 40.7
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 4.5e-22 110.5 162 37.0
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 5.9e-22 110.2 211 37.4
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.0e-21 109.4 242 32.2
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 1.0e-21 109.4 202 35.1
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 2.2e-21 108.2 223 35.0
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 2.2e-21 108.2 202 35.1
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 2.2e-21 108.2 184 40.2
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 5.0e-21 107.1 168 38.7
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 5.0e-21 107.1 159 37.7
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 5.0e-21 107.1 140 42.1
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 6.5e-21 106.7 149 40.9
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 1.1e-20 105.9 194 37.6
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 1.4e-20 105.5 170 37.1
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 5.5e-20 103.6 160 37.5
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 7.2e-20 103.2 192 37.5
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 9.4e-20 102.8 147 41.5
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 1.6e-19 102.1 205 35.1
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 1.6e-19 102.1 178 36.5
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 7.9e-19 99.8 224 31.7
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 1.0e-18 99.4 149 39.6
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 1.4e-18 99.0 194 34.0
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 1.8e-18 98.6 179 35.2
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 2.3e-18 98.2 148 39.2
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 3.0e-18 97.8 197 39.1
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 3.9e-18 97.4 214 36.0
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 3.9e-18 97.4 195 34.4
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 3.9e-18 97.4 148 39.2
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 3.9e-18 97.4 148 39.2
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 3.9e-18 97.4 152 38.8
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 5.2e-18 97.1 173 32.9
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 5.2e-18 97.1 148 38.5
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 5.2e-18 97.1 205 35.1
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 1.1e-17 95.9 208 37.0
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 1.5e-17 95.5 197 34.5
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 4.4e-17 94.0 206 31.1
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 4.4e-17 94.0 199 35.7
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 5.7e-17 93.6 190 35.3
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 9.7e-17 92.8 240 34.6
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 9.7e-17 92.8 159 35.8
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 1.7e-16 92.0 180 36.1
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 2.2e-16 91.7 143 39.9
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 3.7e-16 90.9 202 33.2
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 3.7e-16 90.9 206 34.0
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 4.8e-16 90.5 145 39.3
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 1.1e-15 89.4 137 40.9
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 2.4e-15 88.2 170 30.6
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 5.3e-15 87.0 171 34.5
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 1.2e-14 85.9 209 28.7
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 1.2e-14 85.9 182 33.5
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 7.7e-14 83.2 204 27.5
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 7.7e-14 83.2 186 35.5
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 3.8e-13 80.9 223 31.4
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.1e-12 79.3 197 31.5
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 4.2e-12 77.4 211 26.1
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 4.2e-12 77.4 210 26.7
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 5.5e-12 77.0 184 32.6
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 9.4e-12 76.3 139 33.8
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 1.2e-11 75.9 160 31.2
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 1.6e-11 75.5 206 28.6
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 1.6e-11 75.5 107 42.1
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 2.7e-11 74.7 130 33.1
Psat3g199560 Pisum sativum HOM05D004824 ORTHO05D003903 4.7e-11 73.9 73 53.4
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 6.1e-11 73.6 182 31.9
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 6.1e-11 73.6 194 28.9
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 8.0e-11 73.2 173 29.5
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 8.0e-11 73.2 171 28.1
TPR.G27632 Trifolium pratense HOM05D004824 ORTHO05D003903 8.0e-11 73.2 103 38.8
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 1.0e-10 72.8 196 28.6
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 1.4e-10 72.4 112 38.4
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 5.2e-10 70.5 127 33.1
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 5.2e-10 70.5 211 27.5
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 1.2e-09 69.3 191 28.3
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 2.6e-09 68.2 192 29.7
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 2.6e-09 68.2 192 27.6
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 1.3e-08 65.9 188 32.4
arahy.Tifrunner.gnm1.ann1.F7MB9I Arachis hypogaea HOM05D004824 ORTHO05D003903 1.8e-07 62.0 240 27.5
ClCG06G009360 Citrullus lanatus HOM05D000001 ORTHO05D000003 5.3e-07 60.5 75 40.0
arahy.Tifrunner.gnm1.ann1.947KSG Arachis hypogaea HOM05D000162 ORTHO05D000090 9.1e-07 59.7 68 39.7
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 1.2e-06 59.3 108 26.9
Thhalv10009488m.g Eutrema salsugineum HOM05D004824 ORTHO05D031114 1.6e-06 58.9 101 39.6
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 2.0e-06 58.5 79 30.4
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 2.0e-06 58.5 187 28.3
FvH4_5g24641 Fragaria vesca HOM05D000001 ORTHO05D000003 2.7e-06 58.2 90 28.9
SHI33202 Sapria himalayana HOM05D008459 ORTHO05D003903 2.7e-06 58.2 67 43.3
MD17G1208400 Malus domestica HOM05D000891 ORTHO05D000761 3.5e-06 57.8 99 34.3
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 3.5e-06 57.8 103 30.1
Sabra01G0108300 Salix brachista HOM05D007893 ORTHO05D010042 3.5e-06 57.8 160 27.5
FvH4_4g21400 Fragaria vesca HOM05D001779 ORTHO05D001753 4.5e-06 57.4 91 27.5
FAN12G4042 Fragaria x ananassa HOM05D001779 ORTHO05D001753 4.5e-06 57.4 91 27.5
GSVIVG01017677001 Vitis vinifera HOM05D001779 ORTHO05D001753 4.5e-06 57.4 73 32.9
ATR0322G078 Amborella trichopoda HOM05D000891 ORTHO05D000761 5.9e-06 57.0 79 36.7
Lj6A699G68 Lonicera japonica HOM05D001779 ORTHO05D001753 5.9e-06 57.0 99 23.2
RcHm_v2.0_Chr4g0427331 Rosa chinensis HOM05D001779 ORTHO05D001753 5.9e-06 57.0 91 27.5
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 5.9e-06 57.0 112 26.8
Dinv29518 Davidia involucrata HOM05D001779 ORTHO05D001753 7.7e-06 56.6 99 24.2
Rhsim06G0226500 Rhododendron simsii HOM05D000439 ORTHO05D000761 7.7e-06 56.6 73 37.0


User provided reference genes

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