Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4132 Trifolium pratense HOM05D004590 ORTHO05D006056 7.8e-161 570.5 302 100.0
Medtr7g109590 Medicago truncatula HOM05D004590 ORTHO05D006056 3.4e-140 501.9 300 85.7
Psat3g019440 Pisum sativum HOM05D004590 ORTHO05D006056 8.5e-115 417.5 304 74.3
Glyma.19G216900 Glycine max HOM05D004590 ORTHO05D006056 2.0e-87 326.6 310 60.0
Phvul.001G213500 Phaseolus vulgaris HOM05D004590 ORTHO05D006056 8.3e-86 321.2 301 60.8
Glyma.03G220000 Glycine max HOM05D004590 ORTHO05D006056 5.4e-85 318.5 288 62.8
Glyma.10G012400 Glycine max HOM05D004590 ORTHO05D006056 3.5e-84 315.8 285 61.1
Glyma.02G011900 Glycine max HOM05D004590 ORTHO05D006056 1.8e-80 303.5 287 59.9
VMungo1383G1848 Vigna mungo HOM05D004590 ORTHO05D006056 1.8e-80 303.5 297 57.9
Phvul.007G213800 Phaseolus vulgaris HOM05D004590 ORTHO05D006056 2.0e-79 300.1 304 55.9
Lalb_Chr02g0146851 Lupinus albus HOM05D004590 ORTHO05D006056 2.4e-77 293.1 306 56.5
VMungo0720G1332 Vigna mungo HOM05D004590 ORTHO05D006056 3.5e-76 289.3 285 57.5
Ca_10279_v3 Cicer arietinum L. HOM05D004590 ORTHO05D006056 6.6e-75 285.0 314 50.6
Lj5g0007000 Lotus japonicus HOM05D004590 ORTHO05D006056 5.6e-74 282.0 314 52.9
Medtr1g086950 Medicago truncatula HOM05D004590 ORTHO05D006056 8.9e-72 274.6 314 50.3
arahy.Tifrunner.gnm1.ann1.3K3C0B Arachis hypogaea HOM05D004590 ORTHO05D006056 3.4e-71 272.7 280 54.3
Psat6g161400 Pisum sativum HOM05D004590 ORTHO05D006056 8.3e-70 268.1 310 49.4
Lj1g0007921 Lotus japonicus HOM05D004590 ORTHO05D006056 7.0e-69 265.0 304 53.9
TPR.G38694 Trifolium pratense HOM05D004590 ORTHO05D006056 7.3e-66 255.0 323 47.4
Atru.chr5.984 Acer truncatum HOM05D004590 ORTHO05D006056 6.2e-65 251.9 282 52.5
QL12p019662 Quercus lobata HOM05D004590 ORTHO05D006056 8.1e-65 251.5 281 51.2
Ciclev10021487m.g Citrus clementina HOM05D004590 ORTHO05D006056 5.2e-64 248.8 287 50.9
Dinv10105 Davidia involucrata HOM05D004590 ORTHO05D006056 1.2e-63 247.7 278 52.5
Manes.01G228400 Manihot esculenta HOM05D004590 ORTHO05D006056 1.6e-60 237.3 301 46.5
TWI75G0806 Tripterygium wilfordii HOM05D004590 ORTHO05D006056 7.8e-60 235.0 282 47.2
Thecc.01G314300 Theobroma cacao HOM05D004590 ORTHO05D006056 2.3e-59 233.4 298 48.0
Gohir.D08G050700 Gossypium hirsutum HOM05D004590 ORTHO05D006056 3.9e-59 232.6 289 47.4
Sabra14G0088900 Salix brachista HOM05D004590 ORTHO05D006056 4.3e-58 229.2 284 49.3
COL.COLO4_23224 Corchorus olitorius HOM05D004590 ORTHO05D006056 7.3e-58 228.4 281 47.7
CiPaw.07G118200 Carya illinoinensis HOM05D004590 ORTHO05D006056 9.5e-58 228.0 282 48.6
Duzib133G0018 Durio zibethinus HOM05D004590 ORTHO05D006056 9.5e-58 228.0 286 47.9
Gorai.004G050300 Gossypium raimondii HOM05D004590 ORTHO05D006056 9.5e-58 228.0 289 47.1
Potri.014G119900 Populus trichocarpa HOM05D004590 ORTHO05D006056 9.5e-58 228.0 283 47.7
FAN04G1151 Fragaria x ananassa HOM05D004590 ORTHO05D001814 2.8e-57 226.5 300 47.0
FAN18G0138 Fragaria x ananassa HOM05D004590 ORTHO05D006056 4.7e-57 225.7 300 47.7
Gohir.A08G040600 Gossypium hirsutum HOM05D004590 ORTHO05D006056 4.7e-57 225.7 289 46.7
FAN18G0760 Fragaria x ananassa HOM05D004590 ORTHO05D001814 6.2e-57 225.3 303 46.9
Peaxi162Scf00691g00043 Petunia axillaris HOM05D004590 ORTHO05D006056 8.1e-57 224.9 286 46.9
Cfa005786 Carpinus fangiana HOM05D004590 ORTHO05D006056 1.1e-56 224.6 269 50.2
Haze_05055 Corylus avellana HOM05D004590 ORTHO05D006056 1.4e-56 224.2 271 49.4
Potri.002G195400 Populus trichocarpa HOM05D004590 ORTHO05D006056 1.8e-56 223.8 282 48.6
Prupe.8G266000 Prunus persica HOM05D004590 ORTHO05D006056 1.8e-56 223.8 290 47.9
FAN08G1928 Fragaria x ananassa HOM05D004590 ORTHO05D006056 4.0e-56 222.6 304 46.7
Sabra02G0161400 Salix brachista HOM05D004590 ORTHO05D006056 8.9e-56 221.5 282 48.9
CANSAT25G1025 Cannabis sativa HOM05D004590 ORTHO05D006056 1.2e-55 221.1 289 46.0
Cpa.g.sc18.55 Carica papaya HOM05D004590 ORTHO05D006056 2.0e-55 220.3 282 47.5
Manes.05G004200 Manihot esculenta HOM05D004590 ORTHO05D006056 2.0e-55 220.3 299 46.2
Actinidia25853 Actinidia chinensis HOM05D004590 ORTHO05D006056 3.4e-55 219.5 270 48.1
CiPaw.08G089200 Carya illinoinensis HOM05D004590 ORTHO05D006056 4.4e-55 219.2 300 46.0
Gorai.007G122400 Gossypium raimondii HOM05D004590 ORTHO05D006056 4.4e-55 219.2 298 47.0
Solyc01g079370.4 Solanum lycopersicum HOM05D004590 ORTHO05D001814 1.3e-54 217.6 281 44.1
Gohir.D11G113800 Gossypium hirsutum HOM05D004590 ORTHO05D006056 2.9e-54 216.5 296 46.3
Eucgr.H01008 Eucalyptus grandis HOM05D004590 ORTHO05D006056 3.2e-53 213.0 273 45.4
Eucgr.L03092 Eucalyptus grandis HOM05D004590 ORTHO05D006056 7.1e-53 211.8 273 45.4
DCAR_002892 Daucus carota HOM05D004590 ORTHO05D006056 9.2e-53 211.5 288 44.4
Lsat_1_v5_gn_9_2700 Lactuca sativa HOM05D004590 ORTHO05D006056 1.6e-52 210.7 276 45.7
PSO761G0256 Papaver somniferum HOM05D004590 ORTHO05D006056 2.1e-52 210.3 304 43.1
Aqoxy5G02551 Aquilegia oxysepala HOM05D004590 ORTHO05D006056 6.0e-52 208.8 291 43.3
PSO210G2446 Papaver somniferum HOM05D004590 ORTHO05D006056 1.3e-51 207.6 304 42.8
vmacro02401 Vaccinium macrocarpon HOM05D004590 ORTHO05D006056 2.3e-51 206.8 289 44.6
Sopen01g031150 Solanum pennellii HOM05D004590 ORTHO05D006056 6.6e-51 205.3 230 47.4
ECA247G0553 Erigeron canadensis HOM05D001902 ORTHO05D006056 8.6e-51 204.9 294 45.2
HanXRQChr10g0285241 Helianthus annuus HOM05D004590 ORTHO05D006056 8.6e-51 204.9 250 48.0
Peaxi162Scf00058g02629 Petunia axillaris HOM05D004590 ORTHO05D006056 2.5e-50 203.4 288 45.1
CiPaw.07G118100 Carya illinoinensis HOM05D004590 ORTHO05D006056 3.3e-50 203.0 283 44.2
MD03G1293400 Malus domestica HOM05D004590 ORTHO05D006056 3.3e-50 203.0 290 45.5
Migut.N00771 Erythranthe guttata HOM05D004590 ORTHO05D006056 7.3e-50 201.8 296 44.6
DCAR_018295 Daucus carota HOM05D004590 ORTHO05D006056 2.8e-49 199.9 302 40.4
Oeu008476.1 Olea europaea HOM05D004590 ORTHO05D006056 3.6e-49 199.5 231 48.5
Nitab4.5_0007407g0080 Nicotiana tabacum HOM05D004590 ORTHO05D001814 1.8e-48 197.2 300 42.0
FAN13G0862 Fragaria x ananassa HOM05D004590 ORTHO05D001814 2.4e-48 196.8 304 43.8
SalBow2G1668 Salvia bowleyana HOM05D004590 ORTHO05D001814 3.1e-48 196.4 254 46.5
PGR083G0375 Punica granatum HOM05D004590 ORTHO05D006056 4.0e-48 196.1 293 44.0
Nn4g25589 Nelumbo nucifera HOM05D004590 ORTHO05D006056 5.2e-48 195.7 253 45.1
Nitab4.5_0000363g0250 Nicotiana tabacum HOM05D004590 ORTHO05D001814 6.8e-48 195.3 298 40.6
Dinv10107 Davidia involucrata HOM05D004590 ORTHO05D006056 3.4e-47 193.0 290 43.8
Gohir.A11G109250 Gossypium hirsutum HOM05D004590 ORTHO05D006056 4.9e-46 189.1 256 45.7
Oeu043737.1 Olea europaea HOM05D004590 ORTHO05D006056 6.4e-46 188.7 222 49.1
Solyc06g009610.1 Solanum lycopersicum HOM05D004590 ORTHO05D001814 1.1e-45 188.0 283 41.0
Actinidia17904 Actinidia chinensis HOM05D004590 ORTHO05D006056 1.9e-45 187.2 281 41.6
Rhsim13G0004900 Rhododendron simsii HOM05D001902 ORTHO05D001973 2.4e-45 186.8 266 45.5
PGR044G0990 Punica granatum HOM05D004590 ORTHO05D006056 4.2e-45 186.0 275 43.3
Sopen06g004240 Solanum pennellii HOM05D004590 ORTHO05D001814 5.4e-45 185.7 288 41.3
RcHm_v2.0_Chr7g0241061 Rosa chinensis HOM05D004590 ORTHO05D006056 1.6e-44 184.1 258 46.5
PGSC0003DMG400007284 Solanum tuberosum HOM05D004590 ORTHO05D006056 2.7e-44 183.3 291 41.2
Sed0021092 Sechium edule HOM05D004590 ORTHO05D006056 3.5e-44 183.0 259 42.1
Nitab4.5_0007087g0030 Nicotiana tabacum HOM05D004590 ORTHO05D001814 2.3e-43 180.3 302 39.7
Sp4g29300 Schrenkiella parvula HOM05D004590 ORTHO05D006056 3.0e-43 179.9 269 42.4
DCAR_012338 Daucus carota HOM05D004590 ORTHO05D006056 6.6e-43 178.7 283 39.9
THA.LOC104802151 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 5.6e-42 175.6 292 40.1
Dinv33123 Davidia involucrata HOM05D004590 ORTHO05D006056 7.3e-42 175.3 220 48.6
Lj1C16T8 Lonicera japonica HOM05D004590 ORTHO05D006056 9.6e-42 174.9 283 42.4
MELO3C017913.2 Cucumis melo HOM05D001902 ORTHO05D001973 2.1e-41 173.7 249 41.8
CARHR142760 Cardamine hirsuta HOM05D004590 ORTHO05D006056 2.8e-41 173.3 269 42.0
A03p25930 Brassica napus HOM05D004590 ORTHO05D006056 4.8e-41 172.6 268 41.0
Lalb_Chr21g0309621 Lupinus albus HOM05D004590 ORTHO05D006056 1.4e-40 171.0 190 53.2
AT2G47360 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 1.8e-40 170.6 270 41.1
BcaB02g08783 Brassica carinata HOM05D004590 ORTHO05D006056 1.8e-40 170.6 271 41.0
AL1G11900 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 4.0e-40 169.5 283 39.2
AL4G46920 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 6.9e-40 168.7 269 40.5
BcaC02g12568 Brassica carinata HOM05D004590 ORTHO05D006056 1.5e-39 167.5 271 41.0
BolC4t21692H Brassica oleracea HOM05D004590 ORTHO05D006056 1.5e-39 167.5 271 41.0
THA.LOC104815920 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 2.0e-39 167.2 259 39.4
BcaB01g03170 Brassica carinata HOM05D004590 ORTHO05D006056 3.4e-39 166.4 267 40.1
Thhalv10001759m.g Eutrema salsugineum HOM05D004590 ORTHO05D006056 4.4e-39 166.0 271 39.9
A05p00540 Brassica napus HOM05D004590 ORTHO05D006056 7.6e-39 165.2 270 40.4
C04p00580 Brassica napus HOM05D004590 ORTHO05D006056 1.3e-38 164.5 271 40.6
AT1G02570 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 2.2e-38 163.7 260 38.8
BraA05t19052Z Brassica rapa HOM05D004590 ORTHO05D006056 2.2e-38 163.7 270 40.4
Carub.0001s0163 Capsella rubella HOM05D004590 ORTHO05D006056 6.4e-38 162.2 260 38.8
BraA03t11810Z Brassica rapa HOM05D004590 ORTHO05D006056 8.4e-38 161.8 268 38.8
CARHR001880 Cardamine hirsuta HOM05D004590 ORTHO05D006056 1.1e-37 161.4 257 39.7
PSO223G0035 Papaver somniferum HOM05D004590 ORTHO05D006056 1.9e-37 160.6 270 38.5
Thhalv10009368m.g Eutrema salsugineum HOM05D004590 ORTHO05D006056 3.2e-37 159.8 259 39.0
Cc01_g21490 Coffea canephora HOM05D004590 ORTHO05D006056 4.2e-37 159.5 295 37.6
ClCG10G011450 Citrullus lanatus HOM05D004590 ORTHO05D006056 7.1e-37 158.7 259 38.2
BcaB06g29451 Brassica carinata HOM05D004590 ORTHO05D006056 9.3e-37 158.3 269 40.1
A10p01300 Brassica napus HOM05D004590 ORTHO05D006056 6.0e-36 155.6 259 37.8
Sp1g01590 Schrenkiella parvula HOM05D004590 ORTHO05D006056 6.0e-36 155.6 262 37.8
BraA10t42408Z Brassica rapa HOM05D004590 ORTHO05D006056 2.3e-35 153.7 259 38.2
BcaC02g06968 Brassica carinata HOM05D004590 ORTHO05D006056 3.0e-35 153.3 269 39.4
C04p72730 Brassica napus HOM05D004590 ORTHO05D006056 3.0e-35 153.3 269 39.4
BolC4t28754H Brassica oleracea HOM05D004590 ORTHO05D006056 3.0e-35 153.3 269 39.4
Migut.N00928 Erythranthe guttata HOM05D004590 ORTHO05D006056 6.6e-35 152.1 286 42.0
BolC5t28912H Brassica oleracea HOM05D004590 ORTHO05D006056 8.7e-35 151.8 259 37.1
C05p01300 Brassica napus HOM05D004590 ORTHO05D006056 1.9e-34 150.6 259 36.7
BolC3t15444H Brassica oleracea HOM05D004590 ORTHO05D006056 1.9e-34 150.6 268 37.3
Aa31LG1G9960 Aethionema arabicum HOM05D004590 ORTHO05D006056 4.3e-34 149.4 255 37.6
MBI19_g07230_MAGBIO Magnolia biondii HOM05D004590 ORTHO05D006056 4.3e-34 149.4 280 35.4
Eucgr.K03548 Eucalyptus grandis HOM05D004590 ORTHO05D006056 7.4e-34 148.7 270 35.6
RcHm_v2.0_Chr7g0241031 Rosa chinensis HOM05D004590 ORTHO05D006056 6.9e-32 142.1 119 58.8
CsaV3_7G030000 Cucumis sativus L. HOM05D004590 ORTHO05D006056 9.0e-32 141.7 270 37.0
AL251U10010 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 2.0e-31 140.6 300 36.3
Aa31LG10G16310 Aethionema arabicum HOM05D004590 ORTHO05D006056 5.8e-31 139.0 285 36.1
ClCG09G005050 Citrullus lanatus HOM05D004590 ORTHO05D001814 1.7e-30 137.5 270 35.2
MELO3C015920.2 Cucumis melo HOM05D004590 ORTHO05D006056 2.9e-30 136.7 270 34.8
Sed0006535 Sechium edule HOM05D004590 ORTHO05D006056 3.8e-30 136.3 282 33.7
AT1G02575 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 4.9e-30 136.0 286 35.3
C03p30930 Brassica napus HOM05D004590 ORTHO05D006056 1.4e-29 134.4 268 35.8
MD03G1293600 Malus domestica HOM05D004590 ORTHO05D006056 3.2e-29 133.3 101 58.4
BcaB03g15770 Brassica carinata HOM05D004590 ORTHO05D006056 7.1e-29 132.1 259 35.5
PSO210G1746 Papaver somniferum HOM05D004590 ORTHO05D006056 3.5e-28 129.8 165 40.0
Nitab4.5_0003540g0150 Nicotiana tabacum HOM05D004590 ORTHO05D006056 6.0e-28 129.0 116 55.2
CANSAT25G2756 Cannabis sativa HOM05D004590 ORTHO05D006056 1.5e-26 124.4 319 37.3
SalBow3G0071 Salvia bowleyana HOM05D004590 ORTHO05D006056 7.4e-26 122.1 252 36.9
SalBow3G0439 Salvia bowleyana HOM05D004590 ORTHO05D006056 7.4e-26 122.1 252 36.9
Actinidia20991 Actinidia chinensis HOM05D000063 ORTHO05D001814 2.1e-25 120.6 117 53.0
BcaC02g09006 Brassica carinata HOM05D004590 ORTHO05D006056 1.4e-24 117.9 132 45.5
BolC4t25517H Brassica oleracea HOM05D004590 ORTHO05D006056 1.4e-24 117.9 132 45.5
EL10As5g23540 Beta vulgaris HOM05D004590 ORTHO05D006056 6.5e-22 109.0 91 50.5
HPP92_001238 Vanilla planifolia HOM05D004590 ORTHO05D006056 6.5e-22 109.0 260 30.8
AL5G45160 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 4.2e-21 106.3 220 36.4
Carub.0004s3008 Capsella rubella HOM05D004590 ORTHO05D006056 4.6e-20 102.8 108 45.4
THA.LOC104801571 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 2.5e-18 97.1 160 36.2
C04p39520 Brassica napus HOM05D004590 ORTHO05D006056 4.8e-17 92.8 111 43.2
FAN18G1107 Fragaria x ananassa HOM05D004590 ORTHO05D006056 9.0e-16 88.6 59 62.7
SGA_v2.0_scaffold198G41121 Striga asiatica HOM05D004590 ORTHO05D006056 1.3e-14 84.7 162 38.3
Hma1.2p1_0408F.1_g146640 Hydrangea macrophylla HOM05D004590 ORTHO05D006056 2.1e-12 77.4 67 49.3
SalBow3G0261 Salvia bowleyana HOM05D004590 ORTHO05D006056 7.9e-12 75.5 264 29.2
THA.LOC104825938 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 2.9e-06 57.0 206 26.7


User provided reference genes

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