Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 2795.0 1370 100.0
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 2409.0 1368 86.2
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 2328.1 1404 82.3
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 0.0e+00 2191.0 1379 79.7
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 2172.1 1389 77.8
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 2149.0 1382 76.8
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 2106.6 1367 76.6
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 2081.2 1382 74.4
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 2020.4 1377 72.5
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 2017.7 1377 72.5
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 0.0e+00 1959.9 1332 74.0
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 1582.8 1448 57.3
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 1580.5 1399 58.5
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 1548.1 1453 56.1
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 1543.9 1396 57.5
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1533.9 1390 57.2
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1528.8 1398 56.7
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1521.9 1394 57.0
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1514.6 1394 55.4
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1504.2 1403 55.5
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1500.3 1389 55.9
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1500.0 1395 55.5
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1493.4 1391 55.7
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 1488.8 1389 56.0
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1484.9 1385 56.3
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 1479.9 1413 56.0
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1475.3 1386 55.5
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1473.8 1385 55.7
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1455.3 1484 52.2
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1453.7 1400 54.1
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 1437.6 1397 54.3
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1432.2 1401 53.8
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 0.0e+00 1423.3 1394 53.7
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 0.0e+00 1422.9 1388 54.3
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 0.0e+00 1419.4 1410 53.9
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1415.2 1351 55.2
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1413.3 1394 52.7
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 1395.9 1385 53.6
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1375.9 1386 53.3
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 0.0e+00 1372.8 1383 52.3
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 0.0e+00 1372.8 1376 50.5
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 1370.1 1455 50.5
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1362.1 1405 52.2
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 0.0e+00 1358.2 1379 50.5
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1354.3 1383 51.0
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 0.0e+00 1352.4 1379 50.8
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 0.0e+00 1349.0 1388 50.4
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 0.0e+00 1347.4 1404 51.3
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 0.0e+00 1346.6 1381 50.3
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1346.6 1405 51.8
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 0.0e+00 1346.3 1382 50.9
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1343.2 1381 50.7
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 0.0e+00 1341.6 1164 58.4
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1339.7 1383 50.8
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 0.0e+00 1332.8 1384 51.1
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 0.0e+00 1331.6 1384 49.4
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 0.0e+00 1330.5 1393 50.0
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1330.5 1381 50.6
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1326.6 1380 51.4
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 0.0e+00 1324.7 1381 50.4
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1317.0 1468 49.3
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 0.0e+00 1307.7 1399 51.0
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 0.0e+00 1305.4 1387 50.9
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 0.0e+00 1298.9 1491 48.9
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 0.0e+00 1295.4 1166 56.4
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1290.8 1412 49.3
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1290.0 1132 57.6
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 0.0e+00 1289.6 1395 49.6
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 0.0e+00 1285.8 1354 51.6
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 0.0e+00 1275.4 1418 49.3
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 0.0e+00 1246.1 1368 49.5
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 1246.1 1405 49.4
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 0.0e+00 1236.1 1356 50.0
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 0.0e+00 1210.7 1383 49.4
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 0.0e+00 1206.8 1428 46.8
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 0.0e+00 1203.7 1374 48.4
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 0.0e+00 1181.8 1375 48.3
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 0.0e+00 1170.2 1391 46.4
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 0.0e+00 1125.2 1379 45.9
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 0.0e+00 1108.6 1411 45.3
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1108.2 1056 54.4
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1104.4 1074 52.9
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1102.4 1060 54.2
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 0.0e+00 1082.4 1040 52.5
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1079.3 982 56.2
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 0.0e+00 1076.6 978 55.8
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 5.5e-294 1015.0 944 55.7
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 1.4e-249 867.5 1397 39.0
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 8.8e-244 848.2 876 52.1
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 4.7e-229 799.3 1502 35.2
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 4.4e-227 792.7 1491 36.3
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 1.2e-221 774.6 1479 35.7
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 1.9e-214 750.7 746 51.9
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 7.1e-201 705.7 850 46.9
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 1.7e-194 684.5 785 49.0
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 1.1e-190 671.8 606 57.4
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 4.8e-189 666.4 1341 36.2
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 2.2e-178 630.9 583 56.8
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.2e-170 604.4 780 44.1
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 2.9e-170 604.0 784 44.5
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 2.5e-169 600.9 600 52.8
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 3.8e-154 550.4 656 49.4
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.2e-153 547.4 884 40.3
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 1.2e-152 545.4 580 50.9
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 9.1e-148 529.3 1341 30.6
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.8e-132 478.4 593 47.0
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 2.4e-108 398.3 388 55.9
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 1.4e-92 345.9 416 48.1
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 1.2e-91 342.8 200 81.5
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 7.3e-89 333.6 315 53.7
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 2.4e-84 318.5 346 47.7
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 2.7e-75 288.5 267 58.1
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.2e-68 265.0 303 46.5
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 3.7e-64 251.5 256 53.9
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 3.4e-62 245.0 1630 22.5
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 9.9e-62 243.4 346 43.4
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 9.9e-62 243.4 243 54.3
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 1.1e-57 229.9 244 50.4
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 8.2e-56 223.8 299 43.1
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 6.9e-55 220.7 263 48.3
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 5.5e-52 211.1 893 26.2
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 1.3e-50 206.5 207 51.7
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 6.3e-48 197.6 202 52.0
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 3.8e-45 188.3 184 54.3
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 1.4e-44 186.4 191 50.3
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-43 183.3 484 27.1
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 7.2e-36 157.5 190 45.3
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 9.4e-36 157.1 86 83.7
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 1.4e-34 153.3 177 48.0
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 7.4e-33 147.5 94 73.4
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 1.4e-31 143.3 256 36.3
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.7e-29 136.3 153 44.4
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 8.8e-26 124.0 148 48.0
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 4.8e-24 118.2 74 74.3
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 3.5e-22 112.1 103 54.4
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 7.2e-20 104.4 82 64.6
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 3.0e-18 99.0 115 44.3
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 7.5e-17 94.4 146 41.1
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 2.7e-14 85.9 85 48.2
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 5.0e-13 81.6 83 50.6
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 5.5e-12 78.2 53 66.0
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 9.4e-12 77.4 88 48.9
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.1e-11 76.3 62 58.1
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.1e-11 76.3 62 58.1
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 2.3e-10 72.8 81 45.7
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 3.0e-10 72.4 62 56.5
Psat0s3766g0160 Pisum sativum HOM05D002292 ORTHO05D012672 8.8e-10 70.9 36 88.9
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.0e-09 69.7 55 61.8
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.0e-09 69.7 56 62.5
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 4.4e-09 68.6 128 39.1
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 4.4e-09 68.6 53 60.4
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.7e-08 66.6 66 54.5
MD17G1281500 Malus domestica HOM05D004810 ORTHO05D006272 4.8e-08 65.1 52 63.5
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-07 63.5 39 59.0
Cre04.g217991 Chlamydomonas reinhardtii HOM05D004810 ORTHO05D006272 2.4e-07 62.8 262 28.6
arahy.Tifrunner.gnm1.ann1.H8DGBI Arachis hypogaea HOM05D002634 ORTHO05D003100 1.2e-06 60.5 106 34.9
Lsat_1_v5_gn_2_85441 Lactuca sativa HOM05D002634 ORTHO05D003100 7.7e-06 57.8 112 31.2


User provided reference genes

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