Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4129 Trifolium pratense HOM05D006667 ORTHO05D008387 1.3e-142 510.4 419 100.0
Medtr1g114610 Medicago truncatula HOM05D006667 ORTHO05D008387 3.4e-122 442.6 419 86.9
Lj5g0023243 Lotus japonicus HOM05D006667 ORTHO05D008387 1.2e-114 417.5 404 86.9
Psat6g234200 Pisum sativum HOM05D006667 ORTHO05D008387 1.5e-114 417.2 417 83.5
Ca_11261_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 4.5e-114 415.6 419 89.3
VMungo0720G1985 Vigna mungo HOM05D006667 ORTHO05D008387 1.0e-110 404.4 419 80.4
Lalb_Chr02g0143651 Lupinus albus HOM05D006667 ORTHO05D008387 2.2e-108 396.7 419 78.8
arahy.Tifrunner.gnm1.ann1.IH6UK4 Arachis hypogaea HOM05D006667 ORTHO05D008387 7.6e-106 388.3 406 81.0
Prupe.1G349400 Prunus persica HOM05D006667 ORTHO05D008387 1.3e-102 377.5 404 78.2
Glyma.10G286600 Glycine max HOM05D006667 ORTHO05D008387 6.7e-102 375.2 420 79.0
arahy.Tifrunner.gnm1.ann1.F8B6JQ Arachis hypogaea HOM05D006667 ORTHO05D008387 2.4e-99 366.7 392 81.6
Glyma.20G102500 Glycine max HOM05D006667 ORTHO05D008387 1.3e-97 360.9 419 76.4
Actinidia04346 Actinidia chinensis HOM05D006667 ORTHO05D008387 2.2e-97 360.1 402 76.6
Rhsim12G0089400 Rhododendron simsii HOM05D006667 ORTHO05D008387 8.5e-97 358.2 406 75.6
Potri.005G088800 Populus trichocarpa HOM05D006667 ORTHO05D008387 3.6e-95 352.8 404 76.7
Dinv07500 Davidia involucrata HOM05D006667 ORTHO05D008387 3.9e-94 349.4 410 76.3
Lj6A708T61 Lonicera japonica HOM05D006667 ORTHO05D008387 5.1e-94 349.0 406 77.6
Lj6A713T75 Lonicera japonica HOM05D006667 ORTHO05D008387 5.1e-94 349.0 406 77.6
FvH4_4g37160 Fragaria vesca HOM05D006667 ORTHO05D008387 5.7e-93 345.5 404 75.5
FAN12G3199 Fragaria x ananassa HOM05D006667 ORTHO05D008387 5.7e-93 345.5 404 75.5
Sabra05G0073100 Salix brachista HOM05D006667 ORTHO05D008387 1.7e-92 344.0 399 75.2
THA.LOC104819372 Tarenaya hassleriana HOM05D006667 ORTHO05D008387 8.2e-92 341.7 406 77.1
RcHm_v2.0_Chr4g0446961 Rosa chinensis HOM05D006667 ORTHO05D008387 1.1e-91 341.3 411 74.7
PGSC0003DMG400011513 Solanum tuberosum HOM05D006667 ORTHO05D008387 5.3e-91 339.0 419 73.5
QL03p045401 Quercus lobata HOM05D006667 ORTHO05D008387 9.1e-91 338.2 408 73.5
Manes.04G162700 Manihot esculenta HOM05D006667 ORTHO05D008387 2.6e-90 336.7 405 79.0
A02p41020 Brassica napus HOM05D006667 ORTHO05D008387 1.7e-89 334.0 405 74.1
TAR622G0133 Trochodendron aralioides HOM05D006667 ORTHO05D008387 6.5e-89 332.0 411 73.0
MELO3C011757.2 Cucumis melo HOM05D006667 ORTHO05D008387 1.1e-88 331.3 404 74.0
BcaC03g18029 Brassica carinata HOM05D006667 ORTHO05D008387 1.4e-88 330.9 405 73.6
C02p60910 Brassica napus HOM05D006667 ORTHO05D008387 1.9e-88 330.5 405 73.6
DCAR_002607 Daucus carota HOM05D006667 ORTHO05D008387 2.5e-88 330.1 404 73.5
Peaxi162Scf00681g00319 Petunia axillaris HOM05D006667 ORTHO05D008387 2.5e-88 330.1 406 73.6
BraA02t09050Z Brassica rapa HOM05D006667 ORTHO05D008387 3.2e-88 329.7 405 74.1
Thecc.02G154400 Theobroma cacao HOM05D006667 ORTHO05D008387 1.6e-87 327.4 404 77.2
CsaV3_5G029020 Cucumis sativus L. HOM05D006667 ORTHO05D008387 2.1e-87 327.0 422 71.6
Gorai.008G147100 Gossypium raimondii HOM05D006667 ORTHO05D008387 2.1e-87 327.0 404 77.2
Gohir.D12G135900 Gossypium hirsutum HOM05D006667 ORTHO05D008387 3.6e-87 326.2 404 77.2
BraA06t26360Z Brassica rapa HOM05D006667 ORTHO05D008387 8.0e-87 325.1 406 74.4
Sabra07G0063900 Salix brachista HOM05D006667 ORTHO05D008387 3.0e-86 323.2 465 58.9
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 3.9e-86 322.8 406 74.1
AL6G34600 Arabidopsis lyrata HOM05D006667 ORTHO05D008387 6.7e-86 322.0 406 73.6
Sp2g23820 Schrenkiella parvula HOM05D006667 ORTHO05D008387 1.5e-85 320.9 406 76.4
CSS0023228 Camellia sinensis var. sinensis HOM05D006667 ORTHO05D008387 2.0e-85 320.5 404 74.5
Hund24389 Selenicereus undatus HOM05D006667 ORTHO05D008387 2.6e-85 320.1 420 70.7
Migut.L00803 Erythranthe guttata HOM05D006667 ORTHO05D008387 9.7e-85 318.2 412 72.3
Thhalv10004329m.g Eutrema salsugineum HOM05D006667 ORTHO05D008387 1.3e-84 317.8 406 73.4
CANSAT78G2402 Cannabis sativa HOM05D006667 ORTHO05D008387 3.7e-84 316.2 404 72.0
Aqoxy3G04313 Aquilegia oxysepala HOM05D006667 ORTHO05D008387 4.8e-84 315.8 405 68.1
Aa31LG11G2790 Aethionema arabicum HOM05D006667 ORTHO05D008387 8.2e-84 315.1 406 72.9
EL10Ac9g22983 Beta vulgaris HOM05D006667 ORTHO05D008387 3.1e-83 313.2 432 69.7
Cpa.g.sc60.94 Carica papaya HOM05D006667 ORTHO05D008387 3.1e-83 313.2 407 72.0
Hma1.2p1_0044F.1_g026320 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 5.9e-82 308.9 402 73.6
CARHR190200 Cardamine hirsuta HOM05D006667 ORTHO05D008387 7.7e-82 308.5 406 71.9
ClCG02G014160 Citrullus lanatus HOM05D006667 ORTHO05D008387 1.5e-80 304.3 404 70.8
Sed0022119 Sechium edule HOM05D006667 ORTHO05D008387 1.9e-80 303.9 406 70.2
Solyc04g008980.3 Solanum lycopersicum HOM05D006667 ORTHO05D008387 1.9e-80 303.9 403 72.7
unitig_749.g13342 Utricularia gibba HOM05D006667 ORTHO05D008387 2.5e-80 303.5 402 73.6
Sed0011343 Sechium edule HOM05D006667 ORTHO05D008387 5.5e-80 302.4 420 68.8
CiPaw.05G172300 Carya illinoinensis HOM05D006667 ORTHO05D008387 9.4e-80 301.6 404 70.3
Carub.0006s2112 Capsella rubella HOM05D006667 ORTHO05D008387 1.2e-79 301.2 406 72.7
Sopen04g004160 Solanum pennellii HOM05D006667 ORTHO05D008387 1.2e-79 301.2 403 72.5
Nitab4.5_0004979g0060 Nicotiana tabacum HOM05D006667 ORTHO05D008387 6.1e-79 298.9 406 71.7
BolC7t44948H Brassica oleracea HOM05D006667 ORTHO05D008387 1.4e-78 297.7 406 71.9
A06p34280 Brassica napus HOM05D006667 ORTHO05D008387 3.0e-78 296.6 406 71.7
TWI74G1436 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 3.0e-78 296.6 404 70.0
MBI06_g27487_MAGBIO Magnolia biondii HOM05D006667 ORTHO05D008387 5.2e-78 295.8 403 69.7
SalBow2G2931 Salvia bowleyana HOM05D006667 ORTHO05D008387 5.2e-78 295.8 400 72.0
AT5G23340 Arabidopsis thaliana HOM05D006667 ORTHO05D008387 4.4e-77 292.7 406 70.9
Cfa008778 Carpinus fangiana HOM05D006667 ORTHO05D008387 5.7e-77 292.4 413 67.1
BcaB07g29860 Brassica carinata HOM05D006667 ORTHO05D008387 9.7e-77 291.6 405 73.3
Nitab4.5_0005997g0030 Nicotiana tabacum HOM05D006667 ORTHO05D008387 4.8e-76 289.3 406 71.2
AUR62032948 Chenopodium quinoa HOM05D006667 ORTHO05D008387 3.1e-75 286.6 408 68.6
CAN.G274.16 Capsicum annuum HOM05D006667 ORTHO05D008387 2.7e-74 283.5 400 70.8
Sc10g0006700 Simmondsia chinensis HOM05D006667 ORTHO05D008387 3.5e-74 283.1 399 68.7
Eucgr.G02589 Eucalyptus grandis HOM05D006667 ORTHO05D008387 2.7e-71 273.5 405 72.6
Hma1.2p1_0044F.1_g026310 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 3.0e-70 270.0 441 53.1
Ca_11262_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 2.0e-69 267.3 182 86.3
TWI53G1716 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 5.7e-69 265.8 404 74.3
Atru.chr11.1242 Acer truncatum HOM05D006667 ORTHO05D008387 8.3e-68 261.9 404 67.6
SGA_v2.0_scaffold80G25957 Striga asiatica HOM05D006667 ORTHO05D008387 2.0e-66 257.3 407 68.1
Ciclev10033734m.g Citrus clementina HOM05D006667 ORTHO05D008387 4.5e-66 256.1 403 59.3
PGR142G2507 Punica granatum HOM05D006667 ORTHO05D008387 7.7e-66 255.4 416 65.4
MSTRG.8092 Avicennia marina HOM05D006667 ORTHO05D008387 1.3e-65 254.6 408 65.9
ECA246G5028 Erigeron canadensis HOM05D002605 ORTHO05D002842 5.0e-65 252.7 398 73.6
vmacro15997 Vaccinium macrocarpon HOM05D006667 ORTHO05D008387 1.9e-64 250.8 536 49.3
HanXRQChr17g0541041 Helianthus annuus HOM05D006667 ORTHO05D008387 3.3e-64 250.0 411 72.0
Zm00001eb185570 Zea mays HOM05D006667 ORTHO05D008387 4.2e-64 249.6 399 59.6
COL.COLO4_33111 Corchorus olitorius HOM05D006667 ORTHO05D008387 7.2e-64 248.8 403 69.5
Lsat_1_v5_gn_3_34481 Lactuca sativa HOM05D006667 ORTHO05D008387 2.1e-63 247.3 405 72.8
AUR62017733 Chenopodium quinoa HOM05D006667 ORTHO05D008387 1.8e-59 234.2 420 59.3
Ah.03g147880 Amaranthus hybridus HOM05D006667 ORTHO05D008387 7.8e-58 228.8 428 53.7
Haze_11790 Corylus avellana HOM05D006667 ORTHO05D008387 8.6e-57 225.3 408 62.0
Oeu027930.1 Olea europaea HOM05D006667 ORTHO05D008387 3.3e-56 223.4 405 68.9
CDE04G2906 Ceratophyllum demersum HOM05D006667 ORTHO05D008387 2.1e-55 220.7 401 64.6
PSO017G3027 Papaver somniferum HOM05D006667 ORTHO05D008387 3.7e-52 209.9 440 60.0
Gohir.A12G132300 Gossypium hirsutum HOM05D006667 ORTHO05D008387 2.5e-48 197.2 181 65.2
HanXRQChr06g0171711 Helianthus annuus HOM05D006667 ORTHO05D008387 2.5e-48 197.2 395 67.6
arahy.Tifrunner.gnm1.ann1.6XP1A8 Arachis hypogaea HOM05D006667 ORTHO05D008387 7.5e-45 185.7 108 80.6
arahy.Tifrunner.gnm1.ann1.RI7T4X Arachis hypogaea HOM05D006667 ORTHO05D008387 7.5e-45 185.7 108 80.6
Nn3g18579 Nelumbo nucifera HOM05D006667 ORTHO05D008387 1.3e-44 184.9 419 65.4
Phvul.007G014200 Phaseolus vulgaris HOM05D006667 ORTHO05D008387 1.9e-43 181.0 182 52.2
SEGI_01489 Sequoiadendron giganteum HOM05D006667 ORTHO05D008387 1.3e-41 174.9 430 55.3
PSO170G5099 Papaver somniferum HOM05D006667 ORTHO05D008387 1.1e-40 171.8 414 63.3
arahy.Tifrunner.gnm1.ann1.ALJ85P Arachis hypogaea HOM05D006667 ORTHO05D008387 1.1e-38 165.2 96 84.4
Potri.007G075600 Populus trichocarpa HOM05D006667 ORTHO05D008387 1.2e-37 161.8 393 44.3
HPP92_025485 Vanilla planifolia HOM05D006667 ORTHO05D008387 2.2e-36 157.5 112 68.8
Dinv17648 Davidia involucrata HOM05D006667 ORTHO05D008387 2.4e-35 154.1 154 61.7
arahy.Tifrunner.gnm1.ann1.L6WSTP Arachis hypogaea HOM05D006667 ORTHO05D008387 2.7e-34 150.6 92 80.4
ATR0618G066 Amborella trichopoda HOM05D006667 ORTHO05D008387 3.0e-33 147.1 111 63.1
Os02g0636400 Oryza sativa ssp. japonica HOM05D006667 ORTHO05D008387 1.9e-32 144.4 174 41.4
SMO116G0353 Selaginella moellendorffii HOM05D006667 ORTHO05D008387 7.6e-29 132.5 105 60.0
Medtr7g010500 Medicago truncatula HOM05D006667 ORTHO05D008387 3.2e-27 127.1 68 89.7
MBI19_g11829_MAGBIO Magnolia biondii HOM05D003317 ORTHO05D003696 1.9e-08 64.7 155 28.4
C06p28130 Brassica napus HOM05D006667 ORTHO05D008387 4.3e-08 63.5 58 53.4
BolC6t37979H Brassica oleracea HOM05D006667 ORTHO05D008387 2.4e-06 57.8 58 48.3
Migut.N00691 Erythranthe guttata HOM05D005998 ORTHO05D007664 5.3e-06 56.6 71 40.8
Nn2g11622 Nelumbo nucifera HOM05D002813 ORTHO05D003203 6.9e-06 56.2 99 35.4
TAR624G0435 Trochodendron aralioides HOM05D003317 ORTHO05D003696 6.9e-06 56.2 157 27.4
Glyma.10G286666 Glycine max HOM05D006667 ORTHO05D008387 9.0e-06 55.8 43 60.5


User provided reference genes

Program Settings