Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 4.1e-52 208.0 122 100.0
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 2.3e-42 175.6 125 76.8
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 3.0e-42 175.3 127 81.9
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 6.8e-39 164.1 126 82.5
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 4.1e-36 154.8 127 65.4
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 2.7e-35 152.1 127 67.7
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 5.1e-34 147.9 127 70.9
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 1.9e-33 146.0 130 63.1
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 2.4e-31 139.0 125 62.4
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 6.8e-31 137.5 120 62.5
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.2e-30 136.7 121 60.3
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 5.8e-30 134.4 121 59.5
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 5.8e-30 134.4 124 58.1
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 9.9e-30 133.7 121 59.5
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 2.2e-29 132.5 125 59.2
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 2.2e-29 132.5 125 59.2
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 2.2e-29 132.5 126 61.9
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 3.8e-29 131.7 123 60.2
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 6.4e-29 131.0 120 58.3
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 1.1e-28 130.2 122 59.0
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 2.4e-28 129.0 120 58.3
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 4.2e-28 128.3 115 57.4
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 4.2e-28 128.3 123 59.3
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 2.7e-27 125.6 121 57.9
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 2.7e-27 125.6 120 55.8
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 4.6e-27 124.8 124 71.0
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 4.6e-27 124.8 125 68.8
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 4.6e-27 124.8 125 70.4
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 7.8e-27 124.0 119 57.1
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 1.0e-26 123.6 134 52.2
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 1.7e-26 122.9 120 55.8
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 3.0e-26 122.1 115 56.5
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 3.9e-26 121.7 123 52.0
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 8.7e-26 120.6 81 72.8
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 1.9e-25 119.4 117 56.4
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 2.5e-25 119.0 119 58.0
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 4.3e-25 118.2 81 71.6
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 1.6e-24 116.3 119 54.6
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 2.1e-24 115.9 121 53.7
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 2.8e-24 115.5 120 53.3
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 2.8e-24 115.5 124 59.7
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 3.6e-24 115.2 120 54.2
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 3.6e-24 115.2 131 51.1
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 4.8e-24 114.8 120 52.5
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 6.2e-24 114.4 116 55.2
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 6.2e-24 114.4 116 58.6
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 1.1e-23 113.6 121 55.4
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 1.4e-23 113.2 124 51.6
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 2.4e-23 112.5 115 54.8
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 4.0e-23 111.7 117 54.7
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 5.3e-23 111.3 124 57.3
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 5.3e-23 111.3 116 53.4
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 9.0e-23 110.5 119 52.9
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 1.2e-22 110.2 118 53.4
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 1.2e-22 110.2 126 50.8
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 1.2e-22 110.2 119 59.7
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 1.2e-22 110.2 120 50.8
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 1.5e-22 109.8 110 54.5
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 1.5e-22 109.8 128 50.0
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 3.4e-22 108.6 116 51.7
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 3.4e-22 108.6 118 50.0
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 3.4e-22 108.6 111 55.0
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 3.4e-22 108.6 115 55.7
SEGI_09956 Sequoiadendron giganteum HOM05D006753 ORTHO05D008521 5.8e-22 107.8 116 49.1
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 7.6e-22 107.5 114 54.4
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 7.6e-22 107.5 117 60.7
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 7.6e-22 107.5 122 60.7
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 7.6e-22 107.5 113 54.0
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 1.7e-21 106.3 117 53.0
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 3.8e-21 105.1 127 49.6
A10p28190 Brassica napus HOM05D006753 ORTHO05D008521 4.9e-21 104.8 122 58.2
BraA10t44868Z Brassica rapa HOM05D006753 ORTHO05D008521 4.9e-21 104.8 122 58.2
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 6.4e-21 104.4 116 52.6
C09p68400 Brassica napus HOM05D006753 ORTHO05D008521 6.4e-21 104.4 125 58.4
BolC9t59587H Brassica oleracea HOM05D006753 ORTHO05D008521 6.4e-21 104.4 125 61.6
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 6.4e-21 104.4 110 60.0
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 6.4e-21 104.4 113 51.3
Aqoxy3G04333 Aquilegia oxysepala HOM05D006753 ORTHO05D008521 2.4e-20 102.4 105 55.2
CDE05G2438 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 3.2e-20 102.1 126 49.2
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 3.2e-20 102.1 113 50.4
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 5.4e-20 101.3 132 47.0
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 7.1e-20 100.9 115 50.4
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 9.3e-20 100.5 110 52.7
CDE05G0871 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 9.3e-20 100.5 112 50.9
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 9.3e-20 100.5 116 50.0
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 9.3e-20 100.5 116 52.6
Rhsim05G0152000 Rhododendron simsii HOM05D006753 ORTHO05D008521 9.3e-20 100.5 105 53.3
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 1.6e-19 99.8 71 71.8
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 1.6e-19 99.8 113 52.2
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 2.7e-19 99.0 117 57.3
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 2.7e-19 99.0 117 57.3
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 2.7e-19 99.0 117 57.3
AT5G08535 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 1.0e-18 97.1 109 56.9
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 1.3e-18 96.7 115 46.1
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 2.3e-18 95.9 124 50.0
AL5G33000 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 5.1e-18 94.7 116 50.0
Aa31LG3G18000 Aethionema arabicum HOM05D006753 ORTHO05D008521 3.3e-17 92.0 119 58.8
Carub.0006s0749 Capsella rubella HOM05D006753 ORTHO05D008521 4.3e-17 91.7 122 56.6
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 9.6e-17 90.5 56 76.8
AL6G19240 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 3.6e-16 88.6 107 53.3
Mapoly0001s0293 Marchantia polymorpha HOM05D006753 ORTHO05D008521 8.1e-16 87.4 112 42.0
BcaB08g37248 Brassica carinata HOM05D006753 ORTHO05D008521 2.4e-15 85.9 88 58.0
Peaxi162Scf00003g02334 Petunia axillaris HOM05D006753 ORTHO05D008521 4.0e-15 85.1 105 47.6
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 1.5e-14 83.2 83 53.0
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 1.5e-14 83.2 83 53.0
SMO166G0033 Selaginella moellendorffii HOM05D006753 ORTHO05D008521 2.6e-14 82.4 103 47.6
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 5.8e-14 81.3 89 53.9
SMO115G0110 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 2.9e-13 79.0 78 56.4
Eucgr.J00331 Eucalyptus grandis HOM05D006753 ORTHO05D008521 2.4e-12 75.9 175 34.3
Nitab4.5_0002355g0040 Nicotiana tabacum HOM05D006753 ORTHO05D008521 3.9e-10 68.6 131 39.7
Thhalv10015604m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 8.7e-10 67.4 84 48.8
vmacro19681 Vaccinium macrocarpon HOM05D006753 ORTHO05D008521 1.8e-07 59.7 40 77.5
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 4.0e-07 58.5 128 43.8
CBR_g16096 Chara braunii HOM05D000019 ORTHO05D000002 4.0e-07 58.5 69 44.9
Haze_17401 Corylus avellana HOM05D006753 ORTHO05D008521 4.0e-07 58.5 54 55.6
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 1.2e-06 57.0 56 51.8
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 1.2e-06 57.0 56 55.4
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 1.2e-06 57.0 54 50.0
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 2.0e-06 56.2 95 35.8
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 2.0e-06 56.2 53 50.9
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 2.6e-06 55.8 50 54.0
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 2.6e-06 55.8 54 53.7
CSS0023466 Camellia sinensis var. sinensis HOM05D006753 ORTHO05D008521 3.4e-06 55.5 27 92.6
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 3.4e-06 55.5 51 52.9
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 4.5e-06 55.1 55 45.5
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 4.5e-06 55.1 56 50.0
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 5.8e-06 54.7 56 50.0
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 5.8e-06 54.7 51 52.9
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 5.8e-06 54.7 51 52.9
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 5.8e-06 54.7 51 52.9
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 5.8e-06 54.7 51 51.0
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 5.8e-06 54.7 56 50.0
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 7.6e-06 54.3 51 52.9
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 7.6e-06 54.3 51 51.0
Cre02.g085200 Chlamydomonas reinhardtii HOM05D006753 ORTHO05D008521 7.6e-06 54.3 47 48.9
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 7.6e-06 54.3 51 51.0
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 7.6e-06 54.3 51 52.9
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 1.0e-05 53.9 51 52.9
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 1.0e-05 53.9 56 50.0
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 1.0e-05 53.9 56 50.0
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 1.0e-05 53.9 56 50.0


User provided reference genes

Program Settings