Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 2.2e-277 958.4 494 100.0
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 8.4e-221 770.4 510 81.0
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 4.5e-214 748.0 496 81.0
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 2.5e-209 732.3 497 77.1
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 7.7e-206 720.7 497 76.5
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 6.5e-205 717.6 497 74.8
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 9.4e-204 713.8 497 74.8
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 2.3e-202 709.1 499 74.7
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 2.2e-200 702.6 498 73.9
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 3.2e-196 688.7 498 73.3
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 4.8e-192 674.9 500 72.4
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 4.0e-170 602.1 500 63.0
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 5.7e-169 598.2 499 62.7
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 7.5e-169 597.8 499 62.5
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 2.4e-167 592.8 499 62.9
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 9.2e-167 590.9 501 62.3
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 1.0e-165 587.4 501 62.7
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 1.7e-165 586.6 496 62.9
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 2.9e-165 585.9 499 61.9
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 1.9e-164 583.2 500 62.0
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 3.3e-164 582.4 500 62.2
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 5.6e-164 581.6 500 62.4
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.1e-163 579.7 500 62.4
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 4.7e-163 578.6 500 62.4
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 6.1e-163 578.2 499 61.1
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 5.2e-162 575.1 500 62.0
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 6.8e-162 574.7 500 61.8
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 2.6e-161 572.8 502 61.4
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 3.7e-160 568.9 500 61.6
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 4.9e-160 568.5 499 60.9
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 8.3e-160 567.8 500 61.4
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 3.2e-159 565.8 500 60.6
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 4.6e-158 562.0 462 63.6
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 5.0e-157 558.5 500 59.8
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 5.6e-156 555.1 500 59.8
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 5.6e-156 555.1 507 59.8
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 6.2e-155 551.6 499 59.1
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 2.3e-154 549.7 500 59.8
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 3.4e-153 545.8 499 59.1
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 1.3e-152 543.9 501 59.1
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 3.7e-152 542.3 498 59.0
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 3.7e-152 542.3 498 58.2
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 6.0e-150 535.0 540 57.0
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 6.6e-149 531.6 499 57.9
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 2.5e-148 529.6 502 57.4
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 7.3e-148 528.1 530 55.1
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 9.5e-148 527.7 501 57.1
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 3.6e-147 525.8 485 57.5
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 3.6e-147 525.8 500 57.4
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 4.7e-147 525.4 501 56.7
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 8.1e-147 524.6 501 56.7
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 5.2e-146 521.9 510 57.1
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 5.2e-146 521.9 501 56.5
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 9.9e-145 517.7 505 56.4
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 2.2e-144 516.5 540 55.4
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.4e-143 513.8 499 56.3
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 2.7e-142 509.6 501 56.9
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 3.0e-141 506.1 506 55.3
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 2.5e-140 503.1 500 54.6
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 7.6e-137 491.5 472 56.6
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 1.7e-136 490.3 501 54.3
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 6.0e-134 481.9 504 54.2
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 7.8e-134 481.5 511 52.3
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 8.7e-133 478.0 542 50.4
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 1.5e-132 477.2 527 52.4
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 1.9e-132 476.9 507 53.5
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 2.8e-131 473.0 501 54.3
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 1.4e-130 470.7 522 52.7
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 1.2e-129 467.6 513 50.9
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 1.3e-128 464.2 510 52.0
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 1.1e-127 461.1 506 52.6
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 5.6e-124 448.7 501 52.1
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 3.6e-123 446.0 577 48.4
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 1.8e-122 443.7 577 48.2
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 1.8e-122 443.7 499 51.7
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 5.3e-122 442.2 506 54.0
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 5.3e-122 442.2 492 51.8
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 9.0e-122 441.4 503 52.3
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 4.5e-121 439.1 503 52.1
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 5.8e-121 438.7 565 48.3
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 6.4e-120 435.3 502 51.0
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 8.4e-120 434.9 451 55.4
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 1.4e-119 434.1 496 51.6
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 2.4e-119 433.3 504 51.8
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 5.4e-119 432.2 546 48.4
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 9.3e-119 431.4 503 49.7
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 1.3e-117 427.6 385 60.3
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 1.8e-117 427.2 515 50.7
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 3.9e-117 426.0 380 60.8
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 1.1e-116 424.5 515 48.5
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 2.5e-116 423.3 386 60.9
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 3.3e-116 422.9 522 51.0
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 1.3e-115 421.0 505 49.7
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 4.8e-115 419.1 512 50.0
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 4.0e-114 416.0 518 50.8
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 6.4e-112 408.7 515 49.7
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 3.2e-111 406.4 452 49.6
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 5.5e-111 405.6 562 45.0
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 6.0e-110 402.1 529 48.4
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 3.0e-109 399.8 527 48.8
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 1.9e-108 397.1 505 49.5
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 5.6e-108 395.6 507 47.9
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 1.1e-103 381.3 511 47.9
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 5.7e-100 369.0 433 49.9
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 4.5e-97 359.4 352 56.8
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 5.0e-96 355.9 351 55.0
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 1.4e-85 321.2 264 64.4
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 1.2e-70 271.6 219 66.2
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 2.7e-70 270.4 219 65.8
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 1.7e-67 261.2 218 64.7
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 1.1e-66 258.5 266 55.3
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 5.0e-64 249.6 395 42.0
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 1.1e-63 248.4 268 54.9
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 3.2e-63 246.9 174 69.0
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 8.3e-59 232.3 221 55.2
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 2.3e-56 224.2 508 35.0
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 4.5e-49 199.9 377 38.7
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 4.5e-49 199.9 457 36.1
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 2.9e-43 180.6 530 33.6
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 5.6e-39 166.4 441 33.1
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.5e-36 158.3 525 29.9
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 2.0e-36 157.9 127 66.9
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.4e-34 151.0 498 25.9
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 4.1e-34 150.2 457 30.2
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 8.6e-32 142.5 453 29.4
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 4.0e-29 133.7 185 42.7
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 6.0e-25 119.8 153 43.8
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 7.8e-25 119.4 451 27.9
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 1.1e-21 109.0 114 47.4
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 1.8e-21 108.2 137 44.5
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 1.3e-16 92.0 81 61.7
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 2.9e-11 74.3 41 80.5
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 7.3e-07 59.7 91 46.2
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 3.6e-06 57.4 227 28.2


User provided reference genes

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