Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 7.2e-34 146.7 78 100.0
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 7.5e-23 110.2 78 79.5
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 1.3e-22 109.4 77 79.2
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 1.6e-20 102.4 77 71.4
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 8.6e-19 96.7 73 68.5
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 8.6e-19 96.7 73 68.5
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 1.1e-18 96.3 73 69.9
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 1.1e-18 96.3 78 66.7
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 2.5e-18 95.1 76 68.4
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 3.3e-18 94.7 78 66.7
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 9.5e-18 93.2 73 69.9
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 9.5e-18 93.2 72 73.6
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 1.2e-17 92.8 77 66.2
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 1.6e-17 92.4 76 67.1
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 2.8e-17 91.7 73 69.9
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 3.6e-17 91.3 73 67.1
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 3.6e-17 91.3 73 65.8
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 8.0e-17 90.1 77 66.2
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 8.0e-17 90.1 73 65.8
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 1.0e-16 89.7 77 64.9
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 1.0e-16 89.7 77 64.9
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 1.0e-16 89.7 77 64.9
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 1.0e-16 89.7 77 64.9
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 1.0e-16 89.7 77 64.9
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.0e-16 89.7 73 67.1
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 1.0e-16 89.7 75 74.7
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 1.4e-16 89.4 77 62.3
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 1.4e-16 89.4 73 67.1
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.8e-16 89.0 73 68.5
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.8e-16 89.0 73 68.5
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.8e-16 89.0 73 68.5
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 1.8e-16 89.0 74 63.5
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 2.3e-16 88.6 73 68.5
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 2.3e-16 88.6 73 65.8
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 3.0e-16 88.2 73 67.1
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.0e-16 88.2 73 68.5
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 3.0e-16 88.2 73 68.5
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 3.0e-16 88.2 73 68.5
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 4.0e-16 87.8 73 68.5
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 5.2e-16 87.4 73 68.5
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 5.2e-16 87.4 73 64.4
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 5.2e-16 87.4 75 66.7
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 5.2e-16 87.4 72 65.3
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 5.2e-16 87.4 73 68.5
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 5.2e-16 87.4 73 67.1
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 5.2e-16 87.4 73 68.5
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 6.8e-16 87.0 77 63.6
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 6.8e-16 87.0 73 65.8
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 6.8e-16 87.0 79 63.3
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 8.9e-16 86.7 77 64.9
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 8.9e-16 86.7 73 67.1
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.9e-16 86.7 73 67.1
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 8.9e-16 86.7 73 65.8
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 1.2e-15 86.3 73 64.4
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.2e-15 86.3 73 65.8
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.2e-15 86.3 73 67.1
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 1.2e-15 86.3 73 64.4
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 1.2e-15 86.3 74 66.2
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 1.5e-15 85.9 73 67.1
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 1.5e-15 85.9 73 64.4
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 1.5e-15 85.9 73 65.8
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 2.0e-15 85.5 77 62.3
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 2.0e-15 85.5 77 62.3
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 2.0e-15 85.5 77 62.3
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 2.0e-15 85.5 77 61.0
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 2.0e-15 85.5 73 65.8
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 2.6e-15 85.1 75 62.7
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 2.6e-15 85.1 73 64.4
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 3.4e-15 84.7 73 65.8
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 3.4e-15 84.7 77 61.0
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 3.4e-15 84.7 77 61.0
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 4.4e-15 84.3 73 65.8
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 4.4e-15 84.3 77 61.0
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 4.4e-15 84.3 73 64.4
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 4.4e-15 84.3 73 65.8
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 5.7e-15 84.0 74 66.2
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 5.7e-15 84.0 73 64.4
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 5.7e-15 84.0 73 63.0
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 5.7e-15 84.0 73 63.0
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 7.5e-15 83.6 73 64.4
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 9.8e-15 83.2 77 61.0
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 9.8e-15 83.2 76 60.5
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 9.8e-15 83.2 73 63.0
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 1.3e-14 82.8 74 63.5
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 1.3e-14 82.8 73 61.6
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 1.3e-14 82.8 77 61.0
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 1.7e-14 82.4 72 63.9
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 1.7e-14 82.4 77 63.6
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 2.2e-14 82.0 73 64.4
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 2.2e-14 82.0 78 60.3
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 2.2e-14 82.0 73 63.0
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.2e-14 82.0 73 63.0
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.2e-14 82.0 73 63.0
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 2.2e-14 82.0 73 63.0
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 2.9e-14 81.6 73 61.6
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 2.9e-14 81.6 73 61.6
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.9e-14 81.6 75 65.3
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.9e-14 81.6 75 65.3
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 2.9e-14 81.6 73 63.0
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 2.9e-14 81.6 75 60.0
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.7e-14 81.3 73 63.0
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.7e-14 81.3 73 63.0
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 3.7e-14 81.3 79 58.2
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 4.9e-14 80.9 73 63.0
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.9e-14 80.9 73 63.0
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 4.9e-14 80.9 75 64.0
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 4.9e-14 80.9 77 55.8
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 4.9e-14 80.9 77 62.3
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 4.9e-14 80.9 73 63.0
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 6.3e-14 80.5 73 65.8
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 6.3e-14 80.5 73 65.8
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.3e-14 80.1 73 63.0
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 8.3e-14 80.1 77 61.0
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.1e-13 79.7 73 60.3
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.1e-13 79.7 73 60.3
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.1e-13 79.7 77 62.3
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 1.1e-13 79.7 73 63.0
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 1.4e-13 79.3 72 62.5
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 1.4e-13 79.3 73 61.6
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.4e-13 79.3 73 61.6
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 1.4e-13 79.3 73 58.9
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.4e-13 79.3 75 65.3
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 1.4e-13 79.3 72 59.7
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 1.8e-13 79.0 77 53.2
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 1.8e-13 79.0 78 57.7
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 2.4e-13 78.6 76 56.6
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 2.4e-13 78.6 73 60.3
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 2.4e-13 78.6 73 60.3
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 2.4e-13 78.6 71 63.4
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 2.4e-13 78.6 73 61.6
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 3.2e-13 78.2 77 58.4
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 3.2e-13 78.2 73 58.9
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 3.2e-13 78.2 77 59.7
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 4.1e-13 77.8 73 60.3
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 4.1e-13 77.8 73 61.6
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 5.4e-13 77.4 73 60.3
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 7.0e-13 77.0 73 60.3
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 7.0e-13 77.0 73 60.3
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 9.2e-13 76.6 70 60.0
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 2.0e-12 75.5 70 62.9
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 2.0e-12 75.5 73 60.3
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 3.5e-12 74.7 77 57.1
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 3.5e-12 74.7 73 58.9
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 4.6e-12 74.3 72 56.9
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 5.9e-12 73.9 53 75.5
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 7.8e-12 73.6 73 61.6
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 7.8e-12 73.6 76 59.2
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 1.3e-11 72.8 70 58.6
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 5.0e-11 70.9 73 53.4
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 6.6e-11 70.5 77 57.1
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.6e-11 70.5 73 56.2
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 9.5e-10 66.6 77 48.1
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 9.5e-10 66.6 56 66.1
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 9.5e-10 66.6 77 54.5
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 1.5e-07 59.3 71 45.1
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 2.6e-07 58.5 72 51.4
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 4.4e-07 57.8 59 54.2


User provided reference genes

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