Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 1.8e-75 285.8 142 100.0
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 1.5e-69 266.2 142 93.7
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 4.8e-68 261.2 142 90.8
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 8.2e-68 260.4 142 90.1
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 6.9e-67 257.3 142 89.4
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 6.9e-67 257.3 141 90.1
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 1.2e-66 256.5 142 88.7
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 2.0e-66 255.8 142 88.7
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 7.6e-66 253.8 142 88.7
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 1.0e-65 253.4 142 86.6
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 2.2e-65 252.3 142 86.6
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 2.9e-65 251.9 137 89.8
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 2.9e-65 251.9 141 86.5
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 9.3e-64 246.9 142 84.5
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 1.2e-63 246.5 142 84.5
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 4.6e-63 244.6 142 83.1
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 3.0e-62 241.9 142 83.1
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 3.0e-62 241.9 142 81.7
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 1.9e-61 239.2 142 81.0
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 1.9e-61 239.2 142 80.3
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 1.9e-61 239.2 142 82.4
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 2.5e-61 238.8 142 81.7
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 2.5e-61 238.8 142 81.0
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 9.7e-61 236.9 139 81.3
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 9.7e-61 236.9 136 82.4
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 2.1e-60 235.7 141 80.1
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 3.7e-60 235.0 142 79.6
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 6.3e-60 234.2 142 81.7
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 1.1e-59 233.4 142 78.9
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 1.8e-59 232.6 139 79.9
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 3.1e-59 231.9 139 81.3
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 4.1e-59 231.5 139 80.6
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 6.9e-59 230.7 139 78.4
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 9.0e-59 230.3 139 81.3
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 9.0e-59 230.3 142 79.6
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 9.0e-59 230.3 140 78.6
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 1.5e-58 229.6 142 78.9
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 1.5e-58 229.6 139 79.1
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 1.5e-58 229.6 142 79.6
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 1.5e-58 229.6 142 79.6
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 2.0e-58 229.2 136 80.9
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.6e-58 228.8 140 80.0
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 2.6e-58 228.8 140 80.0
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 4.5e-58 228.0 142 78.9
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 4.5e-58 228.0 142 78.2
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 5.9e-58 227.6 139 78.4
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 7.6e-58 227.3 142 77.5
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 7.6e-58 227.3 140 80.0
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 1.3e-57 226.5 139 78.4
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 3.8e-57 224.9 142 77.5
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 3.8e-57 224.9 139 77.0
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 6.5e-57 224.2 142 78.2
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 8.5e-57 223.8 138 75.4
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.1e-56 223.4 137 78.8
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.9e-56 222.6 139 75.5
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 3.2e-56 221.9 142 76.1
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 3.2e-56 221.9 142 76.1
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 4.2e-56 221.5 136 80.1
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 5.5e-56 221.1 138 75.4
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 5.5e-56 221.1 137 76.6
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 1.6e-55 219.5 136 77.9
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 3.6e-55 218.4 136 77.9
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 3.6e-55 218.4 142 76.1
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 3.6e-55 218.4 140 72.9
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 6.1e-55 217.6 136 76.5
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 6.1e-55 217.6 142 75.4
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 7.9e-55 217.2 139 78.4
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.0e-54 216.9 142 73.9
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 1.0e-54 216.9 142 74.6
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 1.0e-54 216.9 142 74.6
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 1.3e-54 216.5 143 76.2
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 3.9e-54 214.9 117 90.6
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 3.9e-54 214.9 142 73.9
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 5.1e-54 214.5 139 77.0
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 8.7e-54 213.8 143 74.1
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 1.5e-53 213.0 137 75.2
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 2.5e-53 212.2 143 74.1
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 5.7e-53 211.1 117 88.9
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 9.7e-53 210.3 143 72.7
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 1.6e-52 209.5 136 74.3
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 2.8e-52 208.8 140 72.9
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 2.8e-52 208.8 143 74.1
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 3.7e-52 208.4 142 72.5
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 8.2e-52 207.2 137 70.1
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 8.2e-52 207.2 126 80.2
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 1.4e-51 206.5 143 72.7
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 1.8e-51 206.1 143 72.0
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.8e-51 206.1 136 73.5
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 2.4e-51 205.7 123 81.3
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 2.4e-51 205.7 116 85.3
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 3.1e-51 205.3 143 72.0
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 4.1e-51 204.9 143 72.0
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 4.1e-51 204.9 143 72.0
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 9.1e-51 203.8 142 69.0
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 3.4e-50 201.8 137 71.5
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.0e-49 200.3 136 72.8
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 2.9e-49 198.7 125 80.0
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.9e-49 198.7 140 73.6
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.9e-49 198.7 140 72.9
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 5.0e-49 198.0 138 69.6
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 6.5e-49 197.6 116 84.5
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 8.5e-49 197.2 116 83.6
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 1.1e-48 196.8 135 71.1
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 1.4e-48 196.4 127 76.4
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 4.2e-48 194.9 119 81.5
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 1.2e-47 193.4 139 66.9
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 1.2e-47 193.4 121 77.7
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 2.1e-47 192.6 119 77.3
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.0e-46 190.3 116 81.9
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 1.0e-46 190.3 142 65.5
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 2.3e-46 189.1 120 77.5
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 3.0e-46 188.7 138 65.9
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 5.1e-46 188.0 112 79.5
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 5.7e-45 184.5 119 74.8
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 7.4e-45 184.1 137 69.3
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 2.8e-44 182.2 137 64.2
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 1.1e-43 180.3 139 65.5
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 1.2e-42 176.8 138 63.0
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.0e-42 176.0 114 76.3
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 2.6e-42 175.6 116 74.1
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 2.9e-41 172.2 98 79.6
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 8.5e-41 170.6 116 72.4
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 5.5e-40 167.9 120 70.0
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 9.4e-40 167.2 114 71.9
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.6e-39 166.4 114 71.9
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 1.4e-38 163.3 139 59.7
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 1.8e-38 162.9 143 58.0
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 3.7e-36 155.2 136 55.9
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.5e-29 133.3 136 49.3
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 1.7e-28 129.8 79 75.9
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 9.4e-24 114.0 79 68.4
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 1.6e-23 113.2 117 53.8
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 8.0e-23 110.9 64 81.2
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 1.1e-19 100.5 116 52.6
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 4.5e-18 95.1 60 75.0
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 6.8e-06 54.7 64 48.4


User provided reference genes

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