Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14411 Trifolium pratense HOM05D007071 ORTHO05D008677 2.2e-28 128.3 65 100.0
TPR.G40805 Trifolium pratense HOM05D007071 ORTHO05D008677 2.2e-28 128.3 65 100.0
Medtr7g107150 Medicago truncatula HOM05D007071 ORTHO05D008677 8.7e-25 116.3 65 92.3
Psat3g026600 Pisum sativum HOM05D007071 ORTHO05D008677 1.9e-24 115.2 65 90.8
Lj1g0020560 Lotus japonicus HOM05D007071 ORTHO05D008677 3.3e-24 114.4 65 87.7
Glyma.19G203500 Glycine max HOM05D007071 ORTHO05D008677 7.4e-24 113.2 65 84.6
arahy.Tifrunner.gnm1.ann1.B8MRUG Arachis hypogaea HOM05D007071 ORTHO05D008677 9.6e-24 112.8 65 86.2
arahy.Tifrunner.gnm1.ann1.P13BQJ Arachis hypogaea HOM05D007071 ORTHO05D008677 2.1e-23 111.7 65 84.6
Glyma.03G206000 Glycine max HOM05D007071 ORTHO05D008677 2.1e-23 111.7 65 84.6
VMungo1383G1243 Vigna mungo HOM05D007071 ORTHO05D008677 4.8e-23 110.5 65 81.5
Phvul.001G199700 Phaseolus vulgaris HOM05D007071 ORTHO05D008677 1.1e-22 109.4 65 81.5
RcHm_v2.0_Chr3g0477671 Rosa chinensis HOM05D007071 ORTHO05D008677 2.5e-19 98.2 65 72.3
CANSAT64G1821 Cannabis sativa HOM05D007071 ORTHO05D008677 7.1e-19 96.7 65 73.8
Cfa020101 Carpinus fangiana HOM05D007071 ORTHO05D008677 9.3e-19 96.3 67 77.6
CiPaw.09G025100 Carya illinoinensis HOM05D007071 ORTHO05D008677 1.6e-18 95.5 67 76.1
MD14G1046200 Malus domestica HOM05D007071 ORTHO05D008677 2.1e-18 95.1 65 72.3
TWI77G0807 Tripterygium wilfordii HOM05D007071 ORTHO05D008677 4.6e-18 94.0 67 73.1
Prupe.7G088000 Prunus persica HOM05D007071 ORTHO05D008677 1.3e-17 92.4 65 70.8
QL07p025881 Quercus lobata HOM05D007071 ORTHO05D008677 1.3e-17 92.4 66 71.2
Duzib093G1750 Durio zibethinus HOM05D007071 ORTHO05D008677 1.8e-17 92.0 67 71.6
COL.COLO4_29462 Corchorus olitorius HOM05D007071 ORTHO05D008677 5.1e-17 90.5 65 69.2
ECA248G1335 Erigeron canadensis HOM05D007071 ORTHO05D008677 5.1e-17 90.5 65 66.2
FvH4_6g21190 Fragaria vesca HOM05D007071 ORTHO05D008677 5.1e-17 90.5 65 67.7
Potri.016G064200 Populus trichocarpa HOM05D007071 ORTHO05D008677 1.1e-16 89.4 67 67.2
Sabra16G0066300 Salix brachista HOM05D007071 ORTHO05D008677 1.5e-16 89.0 67 67.2
Actinidia37784 Actinidia chinensis HOM05D007071 ORTHO05D008677 1.3e-15 85.9 67 65.7
Sc01g0005210 Simmondsia chinensis HOM05D007071 ORTHO05D008677 1.3e-15 85.9 67 65.7
Gohir.D09G127800 Gossypium hirsutum HOM05D007071 ORTHO05D008677 1.6e-15 85.5 67 65.7
Gorai.006G146400 Gossypium raimondii HOM05D007071 ORTHO05D008677 1.6e-15 85.5 67 65.7
Eucgr.A02531 Eucalyptus grandis HOM05D007071 ORTHO05D008677 2.8e-15 84.7 67 67.2
Gohir.A09G131600 Gossypium hirsutum HOM05D007071 ORTHO05D008677 2.8e-15 84.7 67 64.2
HanXRQChr11g0347671 Helianthus annuus HOM05D007071 ORTHO05D008677 2.8e-15 84.7 65 63.1
ClCG10G017880 Citrullus lanatus HOM05D007071 ORTHO05D008677 1.4e-14 82.4 65 63.1
CsaV3_3G038410 Cucumis sativus L. HOM05D007071 ORTHO05D008677 1.4e-14 82.4 65 64.6
Rhsim03G0057500 Rhododendron simsii HOM05D007071 ORTHO05D008677 1.8e-14 82.0 67 64.2
MELO3C009585.2 Cucumis melo HOM05D007071 ORTHO05D008677 2.4e-14 81.6 65 63.1
Dinv25088 Davidia involucrata HOM05D007071 ORTHO05D008677 3.1e-14 81.3 67 64.2
Manes.08G038400 Manihot esculenta HOM05D007071 ORTHO05D008677 4.1e-14 80.9 66 63.6
PGR004G1089 Punica granatum HOM05D007071 ORTHO05D008677 5.3e-14 80.5 68 66.2
Lalb_Chr25g0287781 Lupinus albus HOM05D007071 ORTHO05D008677 6.9e-14 80.1 63 69.8
Nn2g14444 Nelumbo nucifera HOM05D007071 ORTHO05D008677 6.9e-14 80.1 67 61.2
GSVIVG01022502001 Vitis vinifera HOM05D007071 ORTHO05D008677 6.9e-14 80.1 64 64.1
vmacro07528 Vaccinium macrocarpon HOM05D007071 ORTHO05D008677 3.4e-13 77.8 79 57.0
Hund10779 Selenicereus undatus HOM05D007071 ORTHO05D008677 4.5e-13 77.4 67 59.7
Migut.J00748 Erythranthe guttata HOM05D007071 ORTHO05D008677 7.6e-13 76.6 65 60.0
Cc06_g07070 Coffea canephora HOM05D007071 ORTHO05D008677 1.0e-12 76.3 65 55.4
Lsat_1_v5_gn_1_56481 Lactuca sativa HOM05D000137 ORTHO05D000503 1.3e-12 75.9 65 61.5
THA.LOC104809942 Tarenaya hassleriana HOM05D007071 ORTHO05D008677 2.2e-12 75.1 67 53.7
PSO339G2219 Papaver somniferum HOM05D007071 ORTHO05D008677 5.0e-12 73.9 67 55.2
Aqoxy2G00613 Aquilegia oxysepala HOM05D007071 ORTHO05D008677 8.4e-12 73.2 67 53.7
Nitab4.5_0000117g0100 Nicotiana tabacum HOM05D007071 ORTHO05D008677 1.9e-11 72.0 64 57.8
Peaxi162Scf00425g00036 Petunia axillaris HOM05D007071 ORTHO05D008677 1.9e-11 72.0 63 55.6
Peaxi162Scf00645g00018 Petunia axillaris HOM05D007071 ORTHO05D008677 1.9e-11 72.0 63 55.6
Sed0020351 Sechium edule HOM05D007071 ORTHO05D008677 4.2e-11 70.9 65 56.9
AUR62038410 Chenopodium quinoa HOM05D000573 ORTHO05D008677 5.5e-11 70.5 67 58.2
SGA_v2.0_scaffold31G12809 Striga asiatica HOM05D007071 ORTHO05D008677 5.5e-11 70.5 63 52.4
MBI11_g24568_MAGBIO Magnolia biondii HOM05D007071 ORTHO05D008677 9.3e-11 69.7 65 53.8
Peaxi162Scf00414g00006 Petunia axillaris HOM05D007071 ORTHO05D008677 9.3e-11 69.7 63 54.0
AUR62036298 Chenopodium quinoa HOM05D007071 ORTHO05D008677 1.6e-10 68.9 67 56.7
Sp6g36270 Schrenkiella parvula HOM05D007071 ORTHO05D008677 1.6e-10 68.9 65 53.8
AL6G16680 Arabidopsis lyrata HOM05D007071 ORTHO05D008677 2.1e-10 68.6 65 53.8
A10p29800 Brassica napus HOM05D007071 ORTHO05D008677 2.1e-10 68.6 65 52.3
BolC9t59762H Brassica oleracea HOM05D007071 ORTHO05D008677 2.1e-10 68.6 65 52.3
AT5G06590 Arabidopsis thaliana HOM05D007071 ORTHO05D008677 2.7e-10 68.2 65 53.8
Solyc01g056990.3 Solanum lycopersicum HOM05D007071 ORTHO05D008677 2.7e-10 68.2 65 55.4
CARHR206610 Cardamine hirsuta HOM05D007071 ORTHO05D008677 3.5e-10 67.8 65 52.3
Sopen01g021160 Solanum pennellii HOM05D007071 ORTHO05D008677 3.5e-10 67.8 65 55.4
C09p70180 Brassica napus HOM05D007071 ORTHO05D008677 4.6e-10 67.4 65 50.8
BraA10t45019Z Brassica rapa HOM05D007071 ORTHO05D008677 4.6e-10 67.4 65 50.8
CSS0001330 Camellia sinensis var. sinensis HOM05D007071 ORTHO05D008677 4.6e-10 67.4 59 57.6
Cpa.g.sc222.1 Carica papaya HOM05D007071 ORTHO05D008677 4.6e-10 67.4 67 58.2
Thhalv10014151m.g Eutrema salsugineum HOM05D007071 ORTHO05D008677 4.6e-10 67.4 65 52.3
Carub.0006s0547 Capsella rubella HOM05D007071 ORTHO05D008677 6.1e-10 67.0 65 53.8
MSTRG.5919 Avicennia marina HOM05D007071 ORTHO05D008677 1.3e-09 65.9 65 50.8
Aa31sc291G40 Aethionema arabicum HOM05D007071 ORTHO05D008677 5.1e-09 63.9 68 52.9
FAN09G1879 Fragaria x ananassa HOM05D007071 ORTHO05D008677 8.7e-09 63.2 44 70.5
Ah.12g059560 Amaranthus hybridus HOM05D007071 ORTHO05D008677 7.4e-08 60.1 66 51.5
Thhalv10014358m.g Eutrema salsugineum HOM05D007071 ORTHO05D008677 2.2e-07 58.5 56 48.2
Gohir.A06G128402 Gossypium hirsutum HOM05D007071 ORTHO05D008677 4.8e-07 57.4 46 56.5
Atru.chr8.1251 Acer truncatum HOM05D007071 ORTHO05D008677 6.3e-07 57.0 48 64.6
MD12G1047800 Malus domestica HOM05D007071 ORTHO05D008677 8.2e-07 56.6 49 65.3


User provided reference genes

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