Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40773 Trifolium pratense HOM05D006022 ORTHO05D007649 1.2e-141 506.5 269 100.0
Medtr8g099585 Medicago truncatula HOM05D006022 ORTHO05D007649 3.3e-118 428.7 305 79.7
TPR.G3389 Trifolium pratense HOM05D006022 ORTHO05D007649 2.1e-117 426.0 272 86.8
Psat7g023280 Pisum sativum HOM05D006022 ORTHO05D007649 1.7e-114 416.4 305 76.7
Ca_17472_v3 Cicer arietinum L. HOM05D006022 ORTHO05D007649 6.0e-112 407.9 305 75.1
Lj4g0024036 Lotus japonicus HOM05D006022 ORTHO05D007649 1.4e-100 370.2 313 68.4
Lalb_Chr05g0224031 Lupinus albus HOM05D006022 ORTHO05D007649 3.5e-96 355.5 312 67.0
Glyma.08G023800 Glycine max HOM05D006022 ORTHO05D007649 2.1e-93 346.3 322 64.0
Glyma.05G217800 Glycine max HOM05D006022 ORTHO05D007649 3.6e-93 345.5 320 64.4
Phvul.002G299600 Phaseolus vulgaris HOM05D006022 ORTHO05D007649 1.8e-92 343.2 312 63.8
VMungo0251G1998 Vigna mungo HOM05D006022 ORTHO05D007649 1.1e-89 334.0 311 63.0
arahy.Tifrunner.gnm1.ann1.DK6PZW Arachis hypogaea HOM05D006022 ORTHO05D007649 2.6e-83 312.8 295 63.4
arahy.Tifrunner.gnm1.ann1.MN1JRI Arachis hypogaea HOM05D006022 ORTHO05D007649 4.5e-83 312.0 291 63.9
COL.COLO4_10720 Corchorus olitorius HOM05D006022 ORTHO05D007649 1.6e-69 266.9 314 52.2
Thecc.03G300300 Theobroma cacao HOM05D006022 ORTHO05D007649 1.6e-69 266.9 310 53.2
Duzib084G0652 Durio zibethinus HOM05D006022 ORTHO05D007649 1.1e-68 264.2 312 52.2
QL02p030100 Quercus lobata HOM05D006022 ORTHO05D007649 2.4e-68 263.1 323 52.3
Cfa011987 Carpinus fangiana HOM05D006022 ORTHO05D007649 3.2e-65 252.7 314 53.2
Gohir.A08G112400 Gossypium hirsutum HOM05D006022 ORTHO05D007649 7.2e-65 251.5 311 51.4
Gorai.004G132300 Gossypium raimondii HOM05D006022 ORTHO05D007649 2.7e-64 249.6 312 50.6
Manes.01G050200 Manihot esculenta HOM05D006022 ORTHO05D007649 2.7e-64 249.6 315 49.8
Haze_09085 Corylus avellana HOM05D006022 ORTHO05D007649 3.6e-64 249.2 314 51.9
Gohir.D08G125400 Gossypium hirsutum HOM05D006022 ORTHO05D007649 5.1e-63 245.4 312 50.0
CiPaw.12G081600 Carya illinoinensis HOM05D006022 ORTHO05D007649 4.4e-62 242.3 321 48.0
Atru.chr9.1963 Acer truncatum HOM05D006022 ORTHO05D007649 5.7e-62 241.9 324 49.1
GSVIVG01019556001 Vitis vinifera HOM05D006022 ORTHO05D007649 1.7e-61 240.4 307 51.1
CANSAT21G0687 Cannabis sativa HOM05D006022 ORTHO05D007649 2.2e-61 240.0 203 64.5
Cpa.g.sc79.13 Carica papaya HOM05D006022 ORTHO05D007649 2.8e-61 239.6 311 48.6
Dinv38822 Davidia involucrata HOM05D006022 ORTHO05D007406 1.8e-60 236.9 311 48.6
Nn1g00246 Nelumbo nucifera HOM05D006022 ORTHO05D007649 2.6e-59 233.0 249 55.4
Potri.001G089900 Populus trichocarpa HOM05D006022 ORTHO05D007649 5.9e-59 231.9 303 48.2
MELO3C005765.2 Cucumis melo HOM05D006022 ORTHO05D007649 1.3e-58 230.7 174 66.1
CsaV3_5G001870 Cucumis sativus L. HOM05D006022 ORTHO05D007649 1.3e-58 230.7 246 53.3
ClCG01G001730 Citrullus lanatus HOM05D006022 ORTHO05D007649 1.7e-58 230.3 174 66.7
Prupe.5G122300 Prunus persica HOM05D006022 ORTHO05D007649 2.9e-58 229.6 314 45.9
TAR375G1078 Trochodendron aralioides HOM05D006022 ORTHO05D007649 3.8e-58 229.2 293 47.4
Sabra01G0066300 Salix brachista HOM05D006022 ORTHO05D007649 8.5e-58 228.0 314 46.8
TWI81G0375 Tripterygium wilfordii HOM05D006022 ORTHO05D007649 1.9e-57 226.9 303 47.9
RhsimUnG0007600 Rhododendron simsii HOM05D006022 ORTHO05D007649 5.5e-57 225.3 287 48.8
Rhsim02G0245100 Rhododendron simsii HOM05D006022 ORTHO05D007649 7.2e-57 224.9 281 48.8
PGR042G3794 Punica granatum HOM05D006022 ORTHO05D007649 9.4e-57 224.6 208 57.7
vmacro11345 Vaccinium macrocarpon HOM05D006022 ORTHO05D007649 2.1e-56 223.4 278 48.9
RcHm_v2.0_Chr7g0194241 Rosa chinensis HOM05D006022 ORTHO05D007649 6.1e-56 221.9 312 47.8
Ciclev10018527m.g Citrus clementina HOM05D006022 ORTHO05D007649 1.8e-55 220.3 245 51.8
FvH4_5g04850 Fragaria vesca HOM05D006022 ORTHO05D007649 2.3e-55 219.9 206 58.7
FAN18G3678 Fragaria x ananassa HOM05D006022 ORTHO05D007649 2.3e-55 219.9 206 58.7
Eucgr.E00880 Eucalyptus grandis HOM05D006022 ORTHO05D007649 5.2e-55 218.8 267 51.3
MD14G1130300 Malus domestica HOM05D006022 ORTHO05D007649 1.1e-54 217.6 304 44.4
FAN18G0793 Fragaria x ananassa HOM05D006022 ORTHO05D007649 2.0e-54 216.9 206 58.3
Hma1.2p1_0359F.1_g135140 Hydrangea macrophylla HOM05D006022 ORTHO05D007649 2.0e-54 216.9 257 51.4
FAN04G2854 Fragaria x ananassa HOM05D006022 ORTHO05D007649 3.7e-53 212.6 203 57.6
Sed0008879 Sechium edule HOM05D006022 ORTHO05D007649 3.7e-53 212.6 247 51.0
Ah.07g197550 Amaranthus hybridus HOM05D006022 ORTHO05D007649 1.4e-52 210.7 207 56.0
CSS0021468 Camellia sinensis var. sinensis HOM05D006022 ORTHO05D007649 1.8e-52 210.3 296 47.0
THA.LOC104807002 Tarenaya hassleriana HOM05D006022 ORTHO05D007649 1.8e-52 210.3 282 47.2
DCAR_029909 Daucus carota HOM05D006022 ORTHO05D007649 3.1e-52 209.5 263 49.0
Hund14211 Selenicereus undatus HOM05D006022 ORTHO05D007649 3.1e-52 209.5 174 63.8
Aqoxy5G04291 Aquilegia oxysepala HOM05D006022 ORTHO05D007649 5.3e-52 208.8 180 62.8
Actinidia22171 Actinidia chinensis HOM05D006022 ORTHO05D007649 7.0e-52 208.4 239 51.5
BcaC01g04650 Brassica carinata HOM05D006022 ORTHO05D007649 1.3e-50 204.1 266 49.6
BolC3t15840H Brassica oleracea HOM05D006022 ORTHO05D007649 1.3e-50 204.1 266 49.6
AUR62019856 Chenopodium quinoa HOM05D006022 ORTHO05D007649 1.3e-50 204.1 231 49.8
BcaB01g02727 Brassica carinata HOM05D006022 ORTHO05D007649 1.7e-50 203.8 197 59.4
A03p29210 Brassica napus HOM05D006022 ORTHO05D007649 1.7e-50 203.8 266 50.0
C03p35290 Brassica napus HOM05D006022 ORTHO05D007649 1.7e-50 203.8 266 49.6
Sp6g06550 Schrenkiella parvula HOM05D006022 ORTHO05D007649 3.8e-50 202.6 261 50.2
BraA03t12116Z Brassica rapa HOM05D006022 ORTHO05D007649 5.0e-50 202.2 266 49.6
Sopen12g024380 Solanum pennellii HOM05D006022 ORTHO05D007649 1.1e-49 201.1 289 46.0
CAN.G390.10 Capsicum annuum HOM05D006022 ORTHO05D007649 1.5e-49 200.7 204 57.4
MBI07_g39841_MAGBIO Magnolia biondii HOM05D006022 ORTHO05D007649 1.9e-49 200.3 270 46.3
AUR62010858 Chenopodium quinoa HOM05D006022 ORTHO05D007649 2.5e-49 199.9 231 49.4
MD06G1109300 Malus domestica HOM05D006022 ORTHO05D007649 3.2e-49 199.5 324 42.0
Nitab4.5_0004010g0010 Nicotiana tabacum HOM05D006022 ORTHO05D007649 3.2e-49 199.5 294 44.9
EL10Ac5g12933 Beta vulgaris HOM05D006022 ORTHO05D007649 9.4e-49 198.0 246 49.2
Solyc12g055910.3 Solanum lycopersicum HOM05D006022 ORTHO05D007649 1.2e-48 197.6 289 45.7
Carub.0006s2968 Capsella rubella HOM05D006022 ORTHO05D007649 1.6e-48 197.2 184 59.2
Sc22g0004930 Simmondsia chinensis HOM05D006022 ORTHO05D007649 1.6e-48 197.2 301 43.9
Nitab4.5_0004515g0030 Nicotiana tabacum HOM05D006022 ORTHO05D007649 2.1e-48 196.8 213 55.4
PSO170G1024 Papaver somniferum HOM05D006022 ORTHO05D007649 2.1e-48 196.8 249 47.4
AL6G45030 Arabidopsis lyrata HOM05D006022 ORTHO05D007649 4.7e-48 195.7 260 47.3
Lj2A165T43 Lonicera japonica HOM05D006022 ORTHO05D007649 4.7e-48 195.7 310 42.9
Thhalv10028398m.g Eutrema salsugineum HOM05D006022 ORTHO05D007649 6.1e-48 195.3 261 47.9
Cc08_g16230 Coffea canephora HOM05D006022 ORTHO05D007649 1.8e-47 193.7 192 56.8
ECA233G0648 Erigeron canadensis HOM05D006022 ORTHO05D007649 3.0e-47 193.0 199 54.3
Lsat_1_v5_gn_6_8380 Lactuca sativa HOM05D006022 ORTHO05D007649 3.0e-47 193.0 175 61.1
AT4G10930 Arabidopsis thaliana HOM05D006022 ORTHO05D007649 4.0e-47 192.6 264 46.2
MSTRG.1801 Avicennia marina HOM05D006022 ORTHO05D007649 1.2e-46 191.0 203 53.2
HanXRQChr10g0316931 Helianthus annuus HOM05D006022 ORTHO05D007649 1.5e-46 190.7 238 48.7
CARHR255670 Cardamine hirsuta HOM05D006022 ORTHO05D007649 2.6e-46 189.9 275 46.5
SGA_v2.0_scaffold111G31401 Striga asiatica HOM05D006022 ORTHO05D007649 5.7e-46 188.7 239 46.0
Oeu023154.1 Olea europaea HOM05D006022 ORTHO05D007649 2.2e-45 186.8 236 48.3
Migut.E01259 Erythranthe guttata HOM05D006022 ORTHO05D007649 2.7e-43 179.9 285 40.7
ATR0602G083 Amborella trichopoda HOM05D006022 ORTHO05D007649 7.7e-43 178.3 227 47.6
Peaxi162Scf00117g00919 Petunia axillaris HOM05D006022 ORTHO05D007649 7.7e-43 178.3 230 50.9
unitig_26.g9566 Utricularia gibba HOM05D006022 ORTHO05D007649 1.0e-39 167.9 271 40.2
SHI06973 Sapria himalayana HOM05D006022 ORTHO05D007649 2.4e-36 156.8 184 50.0
Zm00001eb209080 Zea mays HOM05D006022 ORTHO05D007649 3.5e-35 152.9 179 51.4
HPP92_009829 Vanilla planifolia HOM05D006022 ORTHO05D007649 7.2e-33 145.2 207 42.5
SEGI_16880 Sequoiadendron giganteum HOM05D006022 ORTHO05D007649 1.4e-31 141.0 240 40.0
Mapoly0002s0107 Marchantia polymorpha HOM05D006022 ORTHO05D007649 7.5e-14 82.0 211 33.6
Pp3c6_15100 Physcomitrium patens HOM05D006022 ORTHO05D007649 4.6e-11 72.8 265 26.8
AagrBONN_evm.TU.Sc2ySwM_228.3550 Anthoceros agrestis HOM05D006022 ORTHO05D007649 2.0e-06 57.4 176 30.7


User provided reference genes

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