Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40752 Trifolium pratense HOM05D001549 ORTHO05D003098 3.3e-17 90.5 42 100.0
Psat4g089680 Pisum sativum HOM05D001549 ORTHO05D003098 7.4e-17 89.4 42 97.6
Glyma.02G062400 Glycine max HOM05D001549 ORTHO05D003098 2.8e-16 87.4 42 92.9
Lj4g0010242 Lotus japonicus HOM05D001549 ORTHO05D003098 3.7e-16 87.0 42 90.5
arahy.Tifrunner.gnm1.ann1.NDG4UC Arachis hypogaea HOM05D001549 ORTHO05D003098 8.1e-16 85.9 42 90.5
arahy.Tifrunner.gnm1.ann1.WXMK30 Arachis hypogaea HOM05D001549 ORTHO05D003098 8.1e-16 85.9 42 90.5
Glyma.16G144700 Glycine max HOM05D001549 ORTHO05D003098 1.1e-15 85.5 42 90.5
Lalb_Chr16g0388481 Lupinus albus HOM05D001549 ORTHO05D003098 1.1e-15 85.5 42 90.5
Ca_22217_v3 Cicer arietinum L. HOM05D001549 ORTHO05D003098 1.8e-15 84.7 42 92.9
MD15G1274800 Malus domestica HOM05D001549 ORTHO05D003098 2.4e-15 84.3 42 85.7
VMungo0738G0001 Vigna mungo HOM05D001549 ORTHO05D003098 2.4e-15 84.3 42 88.1
Ciclev10024926m.g Citrus clementina HOM05D001549 ORTHO05D003098 4.0e-15 83.6 42 88.1
Nitab4.5_0000108g0230 Nicotiana tabacum HOM05D001549 ORTHO05D003098 4.0e-15 83.6 42 83.3
Nitab4.5_0001014g0130 Nicotiana tabacum HOM05D001549 ORTHO05D003098 4.0e-15 83.6 42 83.3
Peaxi162Scf00535g00733 Petunia axillaris HOM05D001549 ORTHO05D003098 4.0e-15 83.6 42 83.3
AL8G44420 Arabidopsis lyrata HOM05D001549 ORTHO05D003098 5.3e-15 83.2 42 88.1
BcaB04g20082 Brassica carinata HOM05D001549 ORTHO05D003098 5.3e-15 83.2 42 88.1
BcaC04g23178 Brassica carinata HOM05D001549 ORTHO05D003098 5.3e-15 83.2 42 88.1
A09p09610 Brassica napus HOM05D001549 ORTHO05D003098 5.3e-15 83.2 42 88.1
C09p11360 Brassica napus HOM05D001549 ORTHO05D003098 5.3e-15 83.2 42 88.1
BolC9t54024H Brassica oleracea HOM05D001549 ORTHO05D003098 5.3e-15 83.2 42 88.1
BraA09t36610Z Brassica rapa HOM05D001549 ORTHO05D003098 5.3e-15 83.2 42 88.1
FAN19G2984 Fragaria x ananassa HOM05D001549 ORTHO05D003098 5.3e-15 83.2 42 85.7
FAN23G0473 Fragaria x ananassa HOM05D001549 ORTHO05D003098 5.3e-15 83.2 42 85.7
FAN26G1027 Fragaria x ananassa HOM05D001549 ORTHO05D003098 5.3e-15 83.2 42 85.7
RcHm_v2.0_Chr1g0319111 Rosa chinensis HOM05D001549 ORTHO05D003098 5.3e-15 83.2 42 85.7
RcHm_v2.0_Chr2g0103681 Rosa chinensis HOM05D001549 ORTHO05D003098 5.3e-15 83.2 42 85.7
TWI73G0625 Tripterygium wilfordii HOM05D001549 ORTHO05D003098 5.3e-15 83.2 42 85.7
CSS0023079 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D003098 6.9e-15 82.8 42 85.7
MD02G1160600 Malus domestica HOM05D001549 ORTHO05D003098 6.9e-15 82.8 42 83.3
TAR628G1517 Trochodendron aralioides HOM05D001549 ORTHO05D003098 6.9e-15 82.8 42 85.7
Dinv39910 Davidia involucrata HOM05D001549 ORTHO05D003098 9.0e-15 82.4 42 83.3
Phvul.003G248800 Phaseolus vulgaris HOM05D001549 ORTHO05D003098 9.0e-15 82.4 42 88.1
Thecc.01G047500 Theobroma cacao HOM05D001549 ORTHO05D003098 9.0e-15 82.4 42 85.7
MBI16_g19886_MAGBIO Magnolia biondii HOM05D001549 ORTHO05D003098 1.5e-14 81.6 42 85.7
Atru.chr3.453 Acer truncatum HOM05D001549 ORTHO05D003098 2.0e-14 81.3 42 83.3
AT5G66960 Arabidopsis thaliana HOM05D001549 ORTHO05D003098 2.0e-14 81.3 42 85.7
Medtr8g079030 Medicago truncatula HOM05D001549 ORTHO05D003098 2.0e-14 81.3 42 88.1
BcaB02g09966 Brassica carinata HOM05D001549 ORTHO05D003098 2.6e-14 80.9 42 85.7
CARHR280720 Cardamine hirsuta HOM05D001549 ORTHO05D003098 2.6e-14 80.9 42 85.7
Sp2g29700 Schrenkiella parvula HOM05D001549 ORTHO05D003098 2.6e-14 80.9 42 85.7
Carub.0008s2754 Capsella rubella HOM05D001549 ORTHO05D003098 3.4e-14 80.5 42 85.7
Cfa004221 Carpinus fangiana HOM05D001549 ORTHO05D003098 3.4e-14 80.5 42 83.3
CiPaw.01G027000 Carya illinoinensis HOM05D001549 ORTHO05D003098 3.4e-14 80.5 42 83.3
Haze_15180 Corylus avellana HOM05D001549 ORTHO05D003098 3.4e-14 80.5 42 83.3
FvH4_1g14740 Fragaria vesca HOM05D001549 ORTHO05D003098 3.4e-14 80.5 42 83.3
Gohir.A11G045300 Gossypium hirsutum HOM05D001549 ORTHO05D003098 3.4e-14 80.5 42 83.3
Gohir.D11G048800 Gossypium hirsutum HOM05D001549 ORTHO05D003098 3.4e-14 80.5 42 83.3
QL06p043875 Quercus lobata HOM05D001549 ORTHO05D003098 3.4e-14 80.5 42 83.3
THA.LOC104827094 Tarenaya hassleriana HOM05D001549 ORTHO05D003098 5.8e-14 79.7 42 83.3
Actinidia12081 Actinidia chinensis HOM05D001549 ORTHO05D003098 7.6e-14 79.3 42 81.0
Duzib264G0623 Durio zibethinus HOM05D001549 ORTHO05D003098 7.6e-14 79.3 42 81.0
FAN28G2359 Fragaria x ananassa HOM05D001549 ORTHO05D003098 7.6e-14 79.3 42 81.0
Oeu021854.1 Olea europaea HOM05D001549 ORTHO05D003098 7.6e-14 79.3 42 81.0
ClCG02G017060 Citrullus lanatus HOM05D001549 ORTHO05D003098 9.9e-14 79.0 42 81.0
Aa31LG1G15510 Aethionema arabicum HOM05D001549 ORTHO05D003098 1.3e-13 78.6 42 81.0
Lj4C136G10 Lonicera japonica HOM05D001549 ORTHO05D003098 1.3e-13 78.6 42 81.0
ECA232G4408 Erigeron canadensis HOM05D001549 ORTHO05D003098 2.2e-13 77.8 42 81.0
Migut.H00490 Erythranthe guttata HOM05D001549 ORTHO05D003098 2.2e-13 77.8 42 78.6
Thhalv10003673m.g Eutrema salsugineum HOM05D001549 ORTHO05D003098 2.2e-13 77.8 42 83.3
Manes.13G130700 Manihot esculenta HOM05D001549 ORTHO05D003098 2.2e-13 77.8 42 81.0
SalBow1G8516 Salvia bowleyana HOM05D001549 ORTHO05D003098 2.2e-13 77.8 42 78.6
Solyc02g090180.3 Solanum lycopersicum HOM05D001549 ORTHO05D003098 2.2e-13 77.8 42 76.2
Sopen02g034870 Solanum pennellii HOM05D001549 ORTHO05D003098 2.2e-13 77.8 42 76.2
PGSC0003DMG400010077 Solanum tuberosum HOM05D001549 ORTHO05D003098 2.2e-13 77.8 42 76.2
Aqoxy6G00926 Aquilegia oxysepala HOM05D001549 ORTHO05D003098 2.9e-13 77.4 42 78.6
CAN.G836.28 Capsicum annuum HOM05D001549 ORTHO05D003098 2.9e-13 77.4 42 78.6
MELO3C004423.2 Cucumis melo HOM05D001549 ORTHO05D003098 2.9e-13 77.4 42 81.0
Gorai.007G052400 Gossypium raimondii HOM05D001549 ORTHO05D003098 2.9e-13 77.4 42 78.6
Sed0004252 Sechium edule HOM05D001549 ORTHO05D003098 2.9e-13 77.4 41 80.5
Rhsim10G0125500 Rhododendron simsii HOM05D001549 ORTHO05D003098 3.8e-13 77.0 42 78.6
Eucgr.I01019 Eucalyptus grandis HOM05D001549 ORTHO05D003098 6.4e-13 76.3 42 78.6
HanXRQChr09g0264421 Helianthus annuus HOM05D001549 ORTHO05D003098 6.4e-13 76.3 42 81.0
Sabra07G0031400 Salix brachista HOM05D001549 ORTHO05D003098 6.4e-13 76.3 42 78.6
SGA_v2.0_scaffold204G41617 Striga asiatica HOM05D001549 ORTHO05D003098 6.4e-13 76.3 42 76.2
CDE01G0335 Ceratophyllum demersum HOM05D001549 ORTHO05D003098 8.4e-13 75.9 42 78.6
CsaV3_2G003710 Cucumis sativus L. HOM05D001549 ORTHO05D003098 8.4e-13 75.9 42 78.6
Lsat_1_v5_gn_4_177661 Lactuca sativa HOM05D001549 ORTHO05D003098 1.1e-12 75.5 42 78.6
vmacro08940 Vaccinium macrocarpon HOM05D001549 ORTHO05D003098 1.1e-12 75.5 42 76.2
PGR042G3280 Punica granatum HOM05D001549 ORTHO05D003098 1.9e-12 74.7 42 76.2
Cc07_g05500 Coffea canephora HOM05D001549 ORTHO05D003098 3.2e-12 73.9 42 76.2
CANSAT01G2865 Cannabis sativa HOM05D001549 ORTHO05D003098 4.2e-12 73.6 42 73.8
Nn5g29397 Nelumbo nucifera HOM05D001549 ORTHO05D003098 4.2e-12 73.6 42 76.2
Potri.007G035900 Populus trichocarpa HOM05D001549 ORTHO05D003098 7.1e-12 72.8 42 76.2
COL.COLO4_11319 Corchorus olitorius HOM05D001549 ORTHO05D003098 1.2e-11 72.0 42 73.8
DCAR_025681 Daucus carota HOM05D001549 ORTHO05D003098 1.2e-11 72.0 42 76.2
HPP92_019638 Vanilla planifolia HOM05D001549 ORTHO05D003098 1.2e-11 72.0 41 70.7
PSO675G5453 Papaver somniferum HOM05D001549 ORTHO05D003098 1.6e-11 71.6 42 76.2
SHI08735 Sapria himalayana HOM05D001549 ORTHO05D003098 1.6e-11 71.6 42 71.4
Os09g0453700 Oryza sativa ssp. japonica HOM05D001549 ORTHO05D003098 2.1e-11 71.2 42 73.8
Sc16g0001540 Simmondsia chinensis HOM05D001549 ORTHO05D003098 2.7e-11 70.9 42 71.4
Hund16303 Selenicereus undatus HOM05D001549 ORTHO05D003098 4.6e-11 70.1 42 71.4
ATR0733G205 Amborella trichopoda HOM05D001549 ORTHO05D003098 6.0e-11 69.7 42 76.2
BcaC06g34770 Brassica carinata HOM05D001549 ORTHO05D003098 6.0e-11 69.7 43 79.1
Cpa.g.sc15.92 Carica papaya HOM05D001549 ORTHO05D003098 3.9e-10 67.0 42 71.4
Ah.03g144010 Amaranthus hybridus HOM05D001549 ORTHO05D003098 5.1e-10 66.6 42 64.3
unitig_21.g20533 Utricularia gibba HOM05D001549 ORTHO05D003098 5.1e-10 66.6 42 61.9
AUR62003825 Chenopodium quinoa HOM05D001549 ORTHO05D003098 3.3e-09 63.9 42 59.5
AUR62001979 Chenopodium quinoa HOM05D001549 ORTHO05D003098 9.6e-09 62.4 42 57.1
AL2G28070 Arabidopsis lyrata HOM05D001549 ORTHO05D003098 3.1e-07 57.4 41 58.5
Zm00001eb315930 Zea mays HOM05D001549 ORTHO05D003098 4.0e-07 57.0 41 63.4
Zm00001eb100490 Zea mays HOM05D001549 ORTHO05D003098 2.6e-06 54.3 42 59.5
Cpa.g.sc289.2 Carica papaya HOM05D001549 ORTHO05D003098 3.4e-06 53.9 41 53.7
Os09g0475700 Oryza sativa ssp. japonica HOM05D001549 ORTHO05D003098 3.4e-06 53.9 41 58.5
Carub.0002s1563 Capsella rubella HOM05D001549 ORTHO05D003098 5.8e-06 53.1 41 56.1
Thhalv10018133m.g Eutrema salsugineum HOM05D001549 ORTHO05D003098 7.6e-06 52.8 41 53.7


User provided reference genes

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