Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 3.6e-155 551.6 287 100.0
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 1.4e-95 353.6 219 84.9
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 2.1e-94 349.7 220 84.5
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 1.7e-93 346.7 226 82.7
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 3.9e-93 345.5 226 82.7
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 3.4e-89 332.4 287 66.6
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 5.8e-89 331.6 287 66.9
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 4.9e-88 328.6 220 80.0
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 3.3e-84 315.8 220 77.3
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 1.2e-81 307.4 220 76.8
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 4.9e-72 275.4 183 80.3
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 1.1e-71 274.2 215 69.3
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 1.9e-71 273.5 218 69.3
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 4.6e-70 268.9 280 58.6
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 4.6e-70 268.9 280 60.4
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 6.0e-70 268.5 216 68.5
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 1.3e-69 267.3 215 69.3
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 1.3e-69 267.3 214 69.2
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 1.8e-69 266.9 215 69.8
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 5.1e-69 265.4 287 56.4
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 6.7e-69 265.0 215 67.0
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 1.9e-68 263.5 215 67.4
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.9e-68 263.5 280 57.5
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 4.3e-68 262.3 228 66.7
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 4.3e-68 262.3 215 65.6
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 7.4e-68 261.5 215 65.1
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 7.4e-68 261.5 280 57.1
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 1.3e-67 260.8 215 66.5
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.3e-67 260.8 218 66.1
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 1.6e-67 260.4 216 65.3
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 1.6e-67 260.4 280 55.4
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 1.4e-66 257.3 216 64.4
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 1.4e-66 257.3 286 55.9
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 1.8e-66 256.9 213 66.2
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 1.8e-66 256.9 215 64.7
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 1.8e-66 256.9 215 67.0
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 2.4e-66 256.5 216 66.2
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.4e-66 256.5 217 67.7
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 3.1e-66 256.1 219 66.2
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 3.1e-66 256.1 215 65.1
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 5.3e-66 255.4 222 66.2
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 5.3e-66 255.4 217 67.7
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 5.3e-66 255.4 222 66.7
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 9.0e-66 254.6 161 82.6
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 9.0e-66 254.6 214 65.0
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 9.0e-66 254.6 218 66.5
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 1.5e-65 253.8 218 64.7
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 1.5e-65 253.8 285 55.8
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 2.0e-65 253.4 221 63.3
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.0e-65 253.4 217 66.8
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 2.0e-65 253.4 215 62.8
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.6e-65 253.1 217 66.8
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 1.0e-64 251.1 236 62.7
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 1.0e-64 251.1 219 63.0
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 1.7e-64 250.4 218 65.6
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 2.2e-64 250.0 219 63.5
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 5.0e-64 248.8 291 54.0
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 6.5e-64 248.4 236 63.1
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 6.5e-64 248.4 217 65.4
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 8.5e-64 248.1 217 65.4
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 1.4e-63 247.3 232 62.9
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 1.9e-63 246.9 232 62.9
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 4.2e-63 245.7 236 62.3
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 4.2e-63 245.7 228 62.3
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 5.5e-63 245.4 290 53.8
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 5.5e-63 245.4 217 64.5
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 7.2e-63 245.0 218 64.7
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 9.4e-63 244.6 203 67.0
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 1.2e-62 244.2 218 64.2
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 6.1e-62 241.9 242 61.2
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 7.9e-62 241.5 224 62.9
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 1.0e-61 241.1 247 57.9
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 2.3e-61 240.0 224 61.6
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 3.0e-61 239.6 220 60.5
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 3.9e-61 239.2 207 66.2
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 5.1e-61 238.8 221 62.4
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 8.8e-61 238.0 198 65.2
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 8.8e-61 238.0 200 64.0
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 1.1e-60 237.7 200 68.5
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 1.5e-60 237.3 251 57.4
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 3.3e-60 236.1 218 60.1
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 5.7e-60 235.3 284 51.4
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 5.7e-60 235.3 220 60.9
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 5.7e-60 235.3 220 60.9
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 1.3e-59 234.2 197 66.5
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 2.2e-59 233.4 218 61.0
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 3.7e-59 232.6 198 63.6
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 8.2e-59 231.5 193 66.3
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 1.4e-58 230.7 215 60.0
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 1.8e-58 230.3 194 67.5
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 3.1e-58 229.6 217 59.4
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 3.4e-57 226.1 202 60.9
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 8.8e-53 211.5 202 58.9
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 4.4e-52 209.1 150 72.7
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 2.0e-49 200.3 193 58.5
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 1.1e-44 184.5 214 53.7
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 6.3e-43 178.7 216 50.0
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 3.1e-42 176.4 238 47.5
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 2.6e-41 173.3 180 57.2
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 1.2e-38 164.5 195 50.8
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 2.6e-36 156.8 148 58.1
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 7.5e-36 155.2 177 52.5
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 3.5e-33 146.4 192 47.4
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 6.5e-32 142.1 218 45.0
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 8.5e-32 141.7 112 65.2
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 1.1e-31 141.4 250 42.0
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 5.5e-31 139.0 165 49.1
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 2.1e-30 137.1 153 47.7
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.8e-27 126.7 90 72.2
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 6.1e-22 109.0 158 44.3
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 1.3e-19 101.3 116 44.8
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 6.3e-19 99.0 165 40.0
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 2.7e-17 93.6 107 50.5
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 1.6e-14 84.3 95 49.5
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 5.8e-12 75.9 152 34.2
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 2.2e-11 73.9 40 85.0


User provided reference genes

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