Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40744 Trifolium pratense HOM05D001459 ORTHO05D001359 4.6e-32 140.6 69 100.0
Medtr8g070820 Medicago truncatula HOM05D001459 ORTHO05D001359 1.8e-28 128.6 69 89.9
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 2.6e-27 124.8 69 88.4
Cpa.g.sc787.2 Carica papaya HOM05D001459 ORTHO05D001359 8.9e-20 99.8 69 66.7
TPR.G10365 Trifolium pratense HOM05D001459 ORTHO05D001359 8.9e-20 99.8 69 72.5
Phvul.003G273900 Phaseolus vulgaris HOM05D001459 ORTHO05D001359 2.0e-19 98.6 69 69.6
Psat4g111720 Pisum sativum HOM05D001459 ORTHO05D001359 3.4e-19 97.8 53 86.8
QL12p001122 Quercus lobata HOM05D001459 ORTHO05D001359 3.4e-19 97.8 69 66.7
Medtr5g028850 Medicago truncatula HOM05D001459 ORTHO05D001359 4.4e-19 97.4 69 71.0
COL.COLO4_16931 Corchorus olitorius HOM05D001459 ORTHO05D001359 5.8e-19 97.1 69 71.0
Glyma.08G265600 Glycine max HOM05D001459 ORTHO05D001359 5.8e-19 97.1 69 72.5
Thecc.03G311000 Theobroma cacao HOM05D001459 ORTHO05D001359 1.7e-18 95.5 69 69.6
Gohir.D08G174200 Gossypium hirsutum HOM05D001459 ORTHO05D001359 4.9e-18 94.0 69 68.1
Gorai.004G181900 Gossypium raimondii HOM05D001459 ORTHO05D001359 4.9e-18 94.0 69 68.1
Potri.001G136000 Populus trichocarpa HOM05D001459 ORTHO05D001359 4.9e-18 94.0 69 68.1
Potri.003G097600 Populus trichocarpa HOM05D001459 ORTHO05D001359 6.4e-18 93.6 69 68.1
arahy.Tifrunner.gnm1.ann1.AFV1R8 Arachis hypogaea HOM05D001459 ORTHO05D001359 8.4e-18 93.2 69 66.7
arahy.Tifrunner.gnm1.ann1.G7EQ73 Arachis hypogaea HOM05D001459 ORTHO05D001359 8.4e-18 93.2 69 66.7
Glyma.16G095200 Glycine max HOM05D001459 ORTHO05D001359 8.4e-18 93.2 69 72.5
Gohir.A08G153300 Gossypium hirsutum HOM05D001459 ORTHO05D001359 8.4e-18 93.2 69 68.1
Sabra01G0105200 Salix brachista HOM05D001459 ORTHO05D001359 8.4e-18 93.2 69 68.1
Lj4g0008832 Lotus japonicus HOM05D001459 ORTHO05D001359 1.4e-17 92.4 69 72.5
CiPaw.11G098900 Carya illinoinensis HOM05D001459 ORTHO05D001359 1.9e-17 92.0 71 64.8
Ciclev10001333m.g Citrus clementina HOM05D001459 ORTHO05D001359 1.9e-17 92.0 69 66.7
Lalb_Chr09g0334641 Lupinus albus HOM05D001459 ORTHO05D001359 1.9e-17 92.0 69 65.2
Phvul.002G136000 Phaseolus vulgaris HOM05D001459 ORTHO05D001359 1.9e-17 92.0 69 69.6
VMungo0251G1353 Vigna mungo HOM05D001459 ORTHO05D001359 1.9e-17 92.0 69 69.6
Atru.chr6.1535 Acer truncatum HOM05D001459 ORTHO05D001359 3.2e-17 91.3 71 66.2
CsaV3_3G048810 Cucumis sativus L. HOM05D001459 ORTHO05D001359 1.6e-16 89.0 69 63.8
Lalb_Chr05g0215701 Lupinus albus HOM05D001459 ORTHO05D001359 3.5e-16 87.8 69 68.1
MD16G1279200 Malus domestica HOM05D001459 ORTHO05D001359 3.5e-16 87.8 71 63.4
Manes.15G191900 Manihot esculenta HOM05D001459 ORTHO05D001359 3.5e-16 87.8 69 65.2
VMungo1215G1612 Vigna mungo HOM05D001459 ORTHO05D001359 3.5e-16 87.8 66 63.6
AUR62007361 Chenopodium quinoa HOM05D001459 ORTHO05D001359 4.6e-16 87.4 70 68.6
AUR62018627 Chenopodium quinoa HOM05D001459 ORTHO05D001359 4.6e-16 87.4 70 68.6
THA.LOC104812761 Tarenaya hassleriana HOM05D001459 ORTHO05D001359 4.6e-16 87.4 72 63.9
TWI81G0099 Tripterygium wilfordii HOM05D001459 ORTHO05D001359 4.6e-16 87.4 70 64.3
Sabra03G0066100 Salix brachista HOM05D001515 ORTHO05D001359 7.8e-16 86.7 73 60.3
Duzib084G0813 Durio zibethinus HOM05D001459 ORTHO05D001359 1.0e-15 86.3 70 65.7
Lj2A229T41 Lonicera japonica HOM05D001459 ORTHO05D001359 1.0e-15 86.3 71 67.6
Manes.15G192000 Manihot esculenta HOM05D001459 ORTHO05D001359 1.0e-15 86.3 69 65.2
GSVIVG01013053001 Vitis vinifera HOM05D001459 ORTHO05D001359 1.0e-15 86.3 69 62.3
ClCG09G011600 Citrullus lanatus HOM05D001459 ORTHO05D001359 1.3e-15 85.9 69 62.3
MELO3C003443.2 Cucumis melo HOM05D001459 ORTHO05D001359 1.3e-15 85.9 69 62.3
Prupe.5G027000 Prunus persica HOM05D001459 ORTHO05D001359 1.3e-15 85.9 71 60.6
Hma1.2p1_1569F.1_g291140 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 2.3e-15 85.1 74 59.5
Hma1.2p1_1645F.1_g295350 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 2.3e-15 85.1 74 59.5
Ah.12g055550 Amaranthus hybridus HOM05D001459 ORTHO05D001359 3.0e-15 84.7 70 64.3
Lalb_Chr16g0381001 Lupinus albus HOM05D001459 ORTHO05D001359 3.0e-15 84.7 69 63.8
EL10Ac5g12000 Beta vulgaris HOM05D001459 ORTHO05D001359 3.9e-15 84.3 69 65.2
VMungo0207G0001 Vigna mungo HOM05D001459 ORTHO05D001359 6.6e-15 83.6 67 59.7
Duzib205G1077 Durio zibethinus HOM05D001459 ORTHO05D001359 8.7e-15 83.2 69 60.9
Lj2g0012038 Lotus japonicus HOM05D001459 ORTHO05D001359 8.7e-15 83.2 70 58.6
TWI15G0913 Tripterygium wilfordii HOM05D001459 ORTHO05D001359 1.1e-14 82.8 71 60.6
Sc01g0006020 Simmondsia chinensis HOM05D001459 ORTHO05D001359 1.9e-14 82.0 71 64.8
CAN.G773.31 Capsicum annuum HOM05D001459 ORTHO05D001359 2.5e-14 81.6 71 66.2
Hma1.2p1_0870F.1_g230920 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 2.5e-14 81.6 70 64.3
Hma1.2p1_3736F.1_g337430 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 2.5e-14 81.6 70 64.3
RcHm_v2.0_Chr7g0212131 Rosa chinensis HOM05D001459 ORTHO05D001359 2.5e-14 81.6 74 60.8
FAN04G0112 Fragaria x ananassa HOM05D001459 ORTHO05D001359 3.3e-14 81.3 73 61.6
FvH4_5g23200 Fragaria vesca HOM05D001459 ORTHO05D001359 5.6e-14 80.5 73 61.6
FAN08G0121 Fragaria x ananassa HOM05D001459 ORTHO05D001359 5.6e-14 80.5 73 61.6
FAN13G2632 Fragaria x ananassa HOM05D001459 ORTHO05D001359 5.6e-14 80.5 73 61.6
FAN18G3381 Fragaria x ananassa HOM05D001459 ORTHO05D001359 5.6e-14 80.5 73 61.6
FAN18G3520 Fragaria x ananassa HOM05D001459 ORTHO05D001359 5.6e-14 80.5 73 61.6
vmacro14206 Vaccinium macrocarpon HOM05D001459 ORTHO05D001359 5.6e-14 80.5 70 62.9
PGSC0003DMG400018469 Solanum tuberosum HOM05D001459 ORTHO05D001359 7.3e-14 80.1 70 61.4
Ca_25167_v3 Cicer arietinum L. HOM05D001459 ORTHO05D001359 9.6e-14 79.7 69 59.4
Gohir.D03G176500 Gossypium hirsutum HOM05D001459 ORTHO05D001359 9.6e-14 79.7 65 63.1
BcaC05g27242 Brassica carinata HOM05D001459 ORTHO05D001359 1.3e-13 79.3 70 55.7
C05p31550 Brassica napus HOM05D001459 ORTHO05D001359 1.3e-13 79.3 70 55.7
BolC5t31879H Brassica oleracea HOM05D001459 ORTHO05D001359 1.3e-13 79.3 70 55.7
Gorai.003G185700 Gossypium raimondii HOM05D001459 ORTHO05D001359 1.3e-13 79.3 65 63.1
Hund11171 Selenicereus undatus HOM05D001459 ORTHO05D001359 1.3e-13 79.3 69 60.9
AT1G32150 Arabidopsis thaliana HOM05D001459 ORTHO05D001359 1.6e-13 79.0 78 53.8
RhsimUnG0059100 Rhododendron simsii HOM05D001459 ORTHO05D001359 1.6e-13 79.0 59 67.8
Eucgr.E00223 Eucalyptus grandis HOM05D001459 ORTHO05D001359 2.1e-13 78.6 69 59.4
Cfa012529 Carpinus fangiana HOM05D001459 ORTHO05D001359 2.8e-13 78.2 71 57.7
Haze_08134 Corylus avellana HOM05D001459 ORTHO05D001359 2.8e-13 78.2 71 57.7
Actinidia14776 Actinidia chinensis HOM05D001459 ORTHO05D001359 3.6e-13 77.8 71 62.0
A09p34050 Brassica napus HOM05D001459 ORTHO05D001359 4.8e-13 77.4 73 56.2
BraA09t38951Z Brassica rapa HOM05D001459 ORTHO05D001359 4.8e-13 77.4 75 56.0
Glyma.01G013600 Glycine max HOM05D001459 ORTHO05D001359 4.8e-13 77.4 69 55.1
Migut.A00608 Erythranthe guttata HOM05D001459 ORTHO05D001359 8.1e-13 76.6 70 58.6
MD06G1026900 Malus domestica HOM05D001459 ORTHO05D001359 8.1e-13 76.6 69 55.1
Nitab4.5_0000179g0100 Nicotiana tabacum HOM05D001459 ORTHO05D001359 8.1e-13 76.6 69 50.7
MSTRG.25695 Avicennia marina HOM05D001459 ORTHO05D001359 1.4e-12 75.9 70 58.6
Solyc08g076100.4 Solanum lycopersicum HOM05D001459 ORTHO05D001359 1.8e-12 75.5 69 50.7
Sopen08g024750 Solanum pennellii HOM05D001459 ORTHO05D001359 1.8e-12 75.5 69 50.7
CSS0040681 Camellia sinensis var. sinensis HOM05D001459 ORTHO05D001359 2.4e-12 75.1 71 60.6
CiPaw.12G068800 Carya illinoinensis HOM05D001459 ORTHO05D001359 2.4e-12 75.1 73 54.8
Dinv25272 Davidia involucrata HOM05D001459 ORTHO05D001359 2.4e-12 75.1 66 63.6
Thhalv10016740m.g Eutrema salsugineum HOM05D001459 ORTHO05D001359 2.4e-12 75.1 74 55.4
ClCG10G001250 Citrullus lanatus HOM05D001459 ORTHO05D001359 3.1e-12 74.7 69 53.6
Thhalv10007879m.g Eutrema salsugineum HOM05D001459 ORTHO05D001359 3.1e-12 74.7 82 50.0
Sed0017623 Sechium edule HOM05D001459 ORTHO05D001359 3.1e-12 74.7 70 57.1
TPR.G6030 Trifolium pratense HOM05D001459 ORTHO05D001359 4.0e-12 74.3 69 56.5
Duzib068G0264 Durio zibethinus HOM05D001459 ORTHO05D001359 5.3e-12 73.9 70 57.1
Glyma.05G245400 Glycine max HOM05D001459 ORTHO05D001359 5.3e-12 73.9 69 53.6
Psat0s1431g0080 Pisum sativum HOM05D001459 ORTHO05D001359 5.3e-12 73.9 69 56.5
Ah.07g201060 Amaranthus hybridus HOM05D001459 ORTHO05D001359 6.9e-12 73.6 69 56.5
CARHR129700 Cardamine hirsuta HOM05D001459 ORTHO05D001359 6.9e-12 73.6 74 54.1
Lalb_Chr09g0325441 Lupinus albus HOM05D001459 ORTHO05D001359 6.9e-12 73.6 69 52.2
Rhsim11G0032400 Rhododendron simsii HOM05D001459 ORTHO05D001359 6.9e-12 73.6 59 66.1
Solyc08g005290.3 Solanum lycopersicum HOM05D001459 ORTHO05D001359 6.9e-12 73.6 72 58.3
Sopen08g001310 Solanum pennellii HOM05D001459 ORTHO05D001359 6.9e-12 73.6 72 58.3
Dinv29009 Davidia involucrata HOM05D001459 ORTHO05D001359 1.2e-11 72.8 65 61.5
Glyma.09G208500 Glycine max HOM05D001459 ORTHO05D001359 1.2e-11 72.8 69 55.1
Nitab4.5_0004528g0040 Nicotiana tabacum HOM05D001459 ORTHO05D001359 1.2e-11 72.8 70 57.1
PGR042G1020 Punica granatum HOM05D001459 ORTHO05D001359 1.2e-11 72.8 69 56.5
BcaB04g17999 Brassica carinata HOM05D001459 ORTHO05D001359 1.5e-11 72.4 74 48.6
CSS0041697 Camellia sinensis var. sinensis HOM05D001459 ORTHO05D001359 1.5e-11 72.4 69 50.7
CSS0044644 Camellia sinensis var. sinensis HOM05D001459 ORTHO05D001359 1.5e-11 72.4 69 63.8
Lj8A322G33 Lonicera japonica HOM05D001459 ORTHO05D001359 1.5e-11 72.4 46 73.9
Sp1g27810 Schrenkiella parvula HOM05D001459 ORTHO05D001359 1.5e-11 72.4 72 50.0
MELO3C013820.2 Cucumis melo HOM05D001459 ORTHO05D001359 2.0e-11 72.0 70 55.7
SGA_v2.0_scaffold89G27434 Striga asiatica HOM05D001459 ORTHO05D001359 2.0e-11 72.0 74 56.8
Nn1g01860 Nelumbo nucifera HOM05D001459 ORTHO05D001359 2.6e-11 71.6 73 58.9
Lsat_1_v5_gn_3_20761 Lactuca sativa HOM05D001459 ORTHO05D001359 3.4e-11 71.2 70 55.7
Peaxi162Scf00045g00335 Petunia axillaris HOM05D001459 ORTHO05D001359 3.4e-11 71.2 45 73.3
Peaxi162Scf00052g00335 Petunia axillaris HOM05D001459 ORTHO05D001359 3.4e-11 71.2 69 53.6
Aa31LG9G15510 Aethionema arabicum HOM05D001459 ORTHO05D001359 4.5e-11 70.9 74 52.7
MSTRG.11904 Avicennia marina HOM05D001459 ORTHO05D001359 4.5e-11 70.9 70 54.3
CsaV3_3G001310 Cucumis sativus L. HOM05D001459 ORTHO05D001359 4.5e-11 70.9 70 54.3
Sp4g17740 Schrenkiella parvula HOM05D001459 ORTHO05D001359 4.5e-11 70.9 74 51.4
Carub.0004s1722 Capsella rubella HOM05D001459 ORTHO05D001359 5.8e-11 70.5 74 54.1
SGA_v2.0_scaffold96G29039 Striga asiatica HOM05D001459 ORTHO05D001359 1.3e-10 69.3 73 58.9
ECA240G2874 Erigeron canadensis HOM05D001459 ORTHO05D001359 1.7e-10 68.9 72 55.6
Lsat_1_v5_gn_5_62340 Lactuca sativa HOM05D001459 ORTHO05D001359 1.7e-10 68.9 76 59.2
Oeu031080.1 Olea europaea HOM05D001459 ORTHO05D001359 2.2e-10 68.6 69 46.4
Nitab4.5_0000556g0270 Nicotiana tabacum HOM05D001459 ORTHO05D001359 2.9e-10 68.2 69 47.8
Nitab4.5_0000301g0070 Nicotiana tabacum HOM05D001459 ORTHO05D001359 3.8e-10 67.8 69 53.6
Oeu027098.1 Olea europaea HOM05D001459 ORTHO05D001359 3.8e-10 67.8 70 52.9
Hund14381 Selenicereus undatus HOM05D001459 ORTHO05D001359 3.8e-10 67.8 69 55.1
Oeu027099.1 Olea europaea HOM05D001459 ORTHO05D001359 4.9e-10 67.4 70 52.9
Carub.0001s3047 Capsella rubella HOM05D001459 ORTHO05D001359 8.4e-10 66.6 79 48.1
ECA246G3010 Erigeron canadensis HOM05D001459 ORTHO05D001359 8.4e-10 66.6 69 52.2
HanXRQChr13g0412591 Helianthus annuus HOM05D001459 ORTHO05D001359 8.4e-10 66.6 70 47.1
Cc08_g03540 Coffea canephora HOM05D001459 ORTHO05D001359 1.1e-09 66.2 70 51.4
Os12g0233800 Oryza sativa ssp. japonica HOM05D001459 ORTHO05D001359 1.1e-09 66.2 61 57.4
Sed0005581 Sechium edule HOM05D001459 ORTHO05D001359 1.1e-09 66.2 70 50.0
BcaC07g37634 Brassica carinata HOM05D001459 ORTHO05D001359 1.9e-09 65.5 77 48.1
HanXRQChr03g0081411 Helianthus annuus HOM05D001459 ORTHO05D001359 3.2e-09 64.7 72 54.2
HanXRQChr03g0081571 Helianthus annuus HOM05D001459 ORTHO05D001359 3.2e-09 64.7 72 54.2
Oeu023589.1 Olea europaea HOM05D001459 ORTHO05D001359 4.2e-09 64.3 69 42.0
Rhsim07G0132900 Rhododendron simsii HOM05D001459 ORTHO05D001359 5.4e-09 63.9 70 51.4
AL1G46230 Arabidopsis lyrata HOM05D001459 ORTHO05D001359 9.3e-09 63.2 78 47.4
AT2G35530 Arabidopsis thaliana HOM05D001459 ORTHO05D001359 1.6e-08 62.4 74 44.6
Actinidia24578 Actinidia chinensis HOM05D001459 ORTHO05D001359 2.1e-08 62.0 32 75.0
TAR366G0001 Trochodendron aralioides HOM05D001459 ORTHO05D001359 2.1e-08 62.0 73 54.8
BcaB02g09421 Brassica carinata HOM05D001459 ORTHO05D001359 3.5e-08 61.2 73 42.5
HanXRQChr13g0423991 Helianthus annuus HOM05D001459 ORTHO05D001359 3.5e-08 61.2 48 64.6
Nn3g19377 Nelumbo nucifera HOM05D001459 ORTHO05D001359 3.5e-08 61.2 62 56.5
SHI20191 Sapria himalayana HOM05D001459 ORTHO05D002750 3.5e-08 61.2 84 45.2
BcaB07g32879 Brassica carinata HOM05D001459 ORTHO05D001359 4.6e-08 60.8 45 62.2
A05p10210 Brassica napus HOM05D001459 ORTHO05D001359 1.0e-07 59.7 70 42.9
Zm00001eb133640 Zea mays HOM05D001459 ORTHO05D001359 1.0e-07 59.7 73 43.8
Zm00001eb208830 Zea mays HOM05D001459 ORTHO05D001359 1.0e-07 59.7 66 51.5
BolC3t14678H Brassica oleracea HOM05D001459 ORTHO05D001359 1.3e-07 59.3 70 42.9
BraA05t19961Z Brassica rapa HOM05D001459 ORTHO05D001359 1.8e-07 58.9 44 54.5
HPP92_012822 Vanilla planifolia HOM05D001459 ORTHO05D001359 2.3e-07 58.5 75 46.7
AL4G31580 Arabidopsis lyrata HOM05D001459 ORTHO05D001359 3.0e-07 58.2 75 46.7
A03p19550 Brassica napus HOM05D001459 ORTHO05D001359 3.0e-07 58.2 70 42.9
BraA03t11208Z Brassica rapa HOM05D001459 ORTHO05D001359 3.0e-07 58.2 70 42.9
Os02g0128200 Oryza sativa ssp. japonica HOM05D001459 ORTHO05D001359 3.0e-07 58.2 65 52.3
unitig_52.g17230 Utricularia gibba HOM05D001459 ORTHO05D001359 3.9e-07 57.8 58 53.4
BcaC02g11657 Brassica carinata HOM05D001459 ORTHO05D001359 5.1e-07 57.4 69 39.1
C04p12660 Brassica napus HOM05D001459 ORTHO05D001359 5.1e-07 57.4 69 39.1
BolC4t22914H Brassica oleracea HOM05D001459 ORTHO05D001359 5.1e-07 57.4 69 39.1
Migut.E01317 Erythranthe guttata HOM05D001459 ORTHO05D001359 5.1e-07 57.4 69 47.8
MBI04_g20972_MAGBIO Magnolia biondii HOM05D001459 ORTHO05D001359 5.1e-07 57.4 76 47.4
Aqoxy3G02160 Aquilegia oxysepala HOM05D001459 ORTHO05D001359 8.7e-07 56.6 73 49.3
CDE06G2237 Ceratophyllum demersum HOM05D001459 ORTHO05D001359 8.7e-07 56.6 64 51.6
Sed0004678 Sechium edule HOM05D001459 ORTHO05D001359 8.7e-07 56.6 74 43.2
BolC8t48004H Brassica oleracea HOM05D001459 ORTHO05D001359 1.5e-06 55.8 78 41.0
Zm00001eb231040 Zea mays HOM05D001459 ORTHO05D001359 2.5e-06 55.1 61 47.5
PSO063G5354 Papaver somniferum HOM05D001459 ORTHO05D001359 3.3e-06 54.7 43 58.1
PSO782G4644 Papaver somniferum HOM05D001459 ORTHO05D001359 3.3e-06 54.7 43 58.1
C03p22790 Brassica napus HOM05D001459 ORTHO05D001359 5.6e-06 53.9 68 42.6
ATR0829G146 Amborella trichopoda HOM05D001459 ORTHO05D001359 7.4e-06 53.5 78 44.9
CDE07G1225 Ceratophyllum demersum HOM05D001459 ORTHO05D001359 7.4e-06 53.5 64 50.0
Zm00001eb411700 Zea mays HOM05D001459 ORTHO05D001359 7.4e-06 53.5 73 42.5


User provided reference genes

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