Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40720 Trifolium pratense HOM05D004435 ORTHO05D005103 8.0e-76 287.0 139 100.0
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 1.1e-74 283.1 139 97.8
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 4.5e-63 244.6 139 87.8
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 9.4e-61 236.9 139 86.3
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 5.7e-58 227.6 139 82.7
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 7.5e-58 227.3 139 80.6
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 1.8e-48 196.1 139 70.5
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 1.5e-45 186.4 139 69.1
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 4.3e-45 184.9 141 67.4
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 2.1e-44 182.6 139 67.6
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 5.2e-43 177.9 134 66.4
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 3.4e-42 175.3 129 69.0
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 1.7e-41 172.9 134 66.4
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 8.3e-41 170.6 134 64.2
Psat2g140840 Pisum sativum HOM05D004435 ORTHO05D005103 1.1e-29 133.7 90 73.3
Psat5g020760 Pisum sativum HOM05D004435 ORTHO05D005103 1.4e-27 126.7 72 83.3
Psat0ss888g0080 Pisum sativum HOM05D004435 ORTHO05D005103 2.0e-26 122.9 72 81.9
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 4.9e-25 118.2 125 50.4
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 8.4e-25 117.5 125 49.6
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 3.2e-24 115.5 137 48.9
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 1.2e-23 113.6 125 44.8
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 4.6e-23 111.7 109 51.4
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 7.8e-23 110.9 137 46.0
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 2.3e-22 109.4 137 45.3
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 2.3e-22 109.4 137 44.5
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 6.6e-22 107.8 139 44.6
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 6.6e-22 107.8 139 44.6
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 6.6e-22 107.8 139 44.6
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 1.1e-21 107.1 139 44.6
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.1e-21 107.1 139 44.6
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.9e-21 106.3 139 44.6
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 3.3e-21 105.5 138 44.9
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 4.3e-21 105.1 109 48.6
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 5.6e-21 104.8 109 47.7
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 5.6e-21 104.8 137 40.9
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 7.3e-21 104.4 140 42.9
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 7.3e-21 104.4 109 47.7
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 3.6e-20 102.1 140 43.6
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 3.6e-20 102.1 110 49.1
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 6.2e-20 101.3 107 47.7
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 8.1e-20 100.9 124 43.5
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 2.4e-19 99.4 142 45.1
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 8.9e-19 97.4 124 41.9
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 8.9e-19 97.4 139 41.0
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 1.5e-18 96.7 124 42.7
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 7.6e-18 94.4 106 49.1
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 1.7e-17 93.2 106 44.3
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 2.2e-17 92.8 135 42.2
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 8.4e-17 90.9 109 45.9
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 8.4e-17 90.9 107 44.9
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 1.9e-16 89.7 125 45.6
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 1.9e-16 89.7 130 41.5
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 2.4e-16 89.4 109 41.3
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 2.4e-16 89.4 106 42.5
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 4.2e-16 88.6 123 41.5
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 5.4e-16 88.2 106 47.2
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 9.3e-16 87.4 133 39.1
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 4.6e-15 85.1 105 42.9
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 1.0e-14 84.0 137 40.1
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 3.9e-14 82.0 106 40.6
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 1.1e-13 80.5 110 40.0
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 2.5e-13 79.3 103 38.8
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 4.3e-13 78.6 115 38.3
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 7.3e-13 77.8 104 41.3
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 7.3e-13 77.8 124 31.5
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 1.3e-12 77.0 104 39.4
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 3.6e-12 75.5 103 39.8
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 8.1e-12 74.3 115 33.9
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 8.1e-12 74.3 103 34.0
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 3.1e-11 72.4 111 38.7
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 2.6e-10 69.3 103 35.0
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 2.6e-10 69.3 133 36.1
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 4.4e-10 68.6 107 34.6
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 4.4e-10 68.6 103 36.9
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 5.8e-10 68.2 107 34.6
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 9.9e-10 67.4 103 33.0
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 9.9e-10 67.4 103 33.0
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 6.4e-09 64.7 107 33.6
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 8.4e-09 64.3 106 34.9
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 4.6e-07 58.5 135 31.9
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 3.9e-06 55.5 117 33.3
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 5.1e-06 55.1 107 34.6
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 6.6e-06 54.7 135 29.6


User provided reference genes

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