Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40719 Trifolium pratense HOM05D003141 ORTHO05D003633 6.0e-144 514.2 274 100.0
Psat2g177640 Pisum sativum HOM05D003141 ORTHO05D003633 1.4e-121 439.9 273 87.2
Medtr5g012780 Medicago truncatula HOM05D003141 ORTHO05D003633 1.0e-119 433.7 274 86.1
Ca_24583_v3 Cicer arietinum L. HOM05D003141 ORTHO05D003633 4.5e-115 418.3 274 85.4
Glyma.01G208600 Glycine max HOM05D003141 ORTHO05D003633 6.8e-103 377.9 275 76.7
Lj2g0024874 Lotus japonicus HOM05D003141 ORTHO05D003633 1.3e-101 373.6 274 75.9
Lalb_Chr05g0214411 Lupinus albus HOM05D003141 ORTHO05D003633 1.0e-98 364.0 271 73.1
arahy.Tifrunner.gnm1.ann1.YK7683 Arachis hypogaea HOM05D003141 ORTHO05D003633 4.2e-97 358.6 273 73.3
Glyma.11G033600 Glycine max HOM05D003141 ORTHO05D003633 6.3e-93 344.7 267 73.0
Phvul.002G057800 Phaseolus vulgaris HOM05D003141 ORTHO05D003633 2.7e-91 339.3 267 71.2
arahy.Tifrunner.gnm1.ann1.ZLH3PG Arachis hypogaea HOM05D003141 ORTHO05D003633 2.0e-83 313.2 266 68.0
Lj4g0011011 Lotus japonicus HOM05D003141 ORTHO05D003633 7.3e-81 304.7 300 61.7
VMungo1215G1426 Vigna mungo HOM05D003141 ORTHO05D003633 1.2e-80 303.9 267 65.2
Ca_21973_v3 Cicer arietinum L. HOM05D003141 ORTHO05D003633 2.3e-79 299.7 304 59.2
Medtr4g100800 Medicago truncatula HOM05D003141 ORTHO05D003633 2.2e-77 293.1 301 58.8
Lalb_Chr09g0330011 Lupinus albus HOM05D003141 ORTHO05D003633 2.7e-75 286.2 303 57.1
Glyma.05G060300 Glycine max HOM05D003141 ORTHO05D003633 3.9e-74 282.3 292 58.9
TPR.G37647 Trifolium pratense HOM05D003141 ORTHO05D003633 8.6e-74 281.2 277 58.1
Psat4g072560 Pisum sativum HOM05D003141 ORTHO05D003633 9.5e-73 277.7 288 58.0
Lalb_Chr05g0221221 Lupinus albus HOM05D003141 ORTHO05D003633 2.9e-69 266.2 288 56.6
QL12p011773 Quercus lobata HOM05D003141 ORTHO05D003633 7.8e-67 258.1 305 52.5
Phvul.003G221300 Phaseolus vulgaris HOM05D003141 ORTHO05D003633 1.7e-66 256.9 296 54.4
QL12p011944 Quercus lobata HOM05D003141 ORTHO05D003633 3.0e-66 256.1 302 52.6
Haze_07903 Corylus avellana HOM05D003141 ORTHO05D003633 1.5e-65 253.8 304 52.3
CiPaw.11G080100 Carya illinoinensis HOM05D003141 ORTHO05D003633 4.0e-63 245.7 308 51.3
VMungo0251G3034 Vigna mungo HOM05D003141 ORTHO05D003633 5.2e-63 245.4 296 52.4
CiPaw.12G051500 Carya illinoinensis HOM05D003141 ORTHO05D003633 4.6e-59 232.3 300 48.3
Potri.001G157300 Populus trichocarpa HOM05D003141 ORTHO05D003633 5.6e-57 225.3 275 51.3
CANSAT21G0191 Cannabis sativa HOM05D003141 ORTHO05D003633 6.2e-56 221.9 298 46.6
Ciclev10018443m.g Citrus clementina HOM05D003141 ORTHO05D003633 8.1e-56 221.5 297 49.2
Manes.01G081400 Manihot esculenta HOM05D003141 ORTHO05D003633 1.1e-55 221.1 298 47.0
Cpa.g.sc29.172 Carica papaya HOM05D003141 ORTHO05D003633 4.0e-55 219.2 301 47.8
ClCG10G002580 Citrullus lanatus HOM05D003141 ORTHO05D003633 9.0e-55 218.0 295 47.8
TWI81G0497 Tripterygium wilfordii HOM05D003141 ORTHO05D003633 2.6e-54 216.5 285 47.7
Sabra03G0047900 Salix brachista HOM05D003141 ORTHO05D003633 3.4e-54 216.1 299 47.8
Dinv39155 Davidia involucrata HOM05D003141 ORTHO05D003633 5.8e-54 215.3 308 44.2
Dinv21645 Davidia involucrata HOM05D003141 ORTHO05D003633 1.3e-53 214.2 296 46.3
Manes.02G040600 Manihot esculenta HOM05D003141 ORTHO05D003633 2.2e-53 213.4 299 46.5
Atru.chr9.1295 Acer truncatum HOM05D003141 ORTHO05D003633 3.8e-53 212.6 299 46.5
CsaV3_3G002610 Cucumis sativus L. HOM05D003141 ORTHO05D003633 4.9e-53 212.2 293 47.4
Sabra01G0134100 Salix brachista HOM05D003141 ORTHO05D003633 1.1e-52 211.1 280 49.6
MELO3C013931.2 Cucumis melo HOM05D003141 ORTHO05D003633 3.5e-51 206.1 289 46.7
Sed0019628 Sechium edule HOM05D003141 ORTHO05D003633 1.7e-50 203.8 296 47.3
Thecc.03G249800 Theobroma cacao HOM05D003141 ORTHO05D003633 2.3e-50 203.4 303 46.9
CSS0047611 Camellia sinensis var. sinensis HOM05D003141 ORTHO05D003633 1.9e-49 200.3 285 46.0
GSVIVG01004716001 Vitis vinifera HOM05D003141 ORTHO05D003633 3.3e-49 199.5 216 56.0
TWI15G0894 Tripterygium wilfordii HOM05D003141 ORTHO05D003633 1.6e-48 197.2 284 45.4
Gohir.A08G169600 Gossypium hirsutum HOM05D003141 ORTHO05D003633 3.1e-47 193.0 296 44.6
AUR62019955 Chenopodium quinoa HOM05D003141 ORTHO05D003633 9.0e-47 191.4 291 46.4
Sc07g0009290 Simmondsia chinensis HOM05D003141 ORTHO05D003633 1.2e-46 191.0 305 43.6
Cc08_g12310 Coffea canephora HOM05D003141 ORTHO05D003633 1.5e-46 190.7 287 46.0
Gohir.A11G027000 Gossypium hirsutum HOM05D003141 ORTHO05D003633 1.5e-46 190.7 301 43.5
Potri.003G077600 Populus trichocarpa HOM05D003141 ORTHO05D003633 1.5e-46 190.7 284 45.8
THA.LOC104806728 Tarenaya hassleriana HOM05D003141 ORTHO05D003633 3.4e-46 189.5 273 43.2
Duzib068G0714 Durio zibethinus HOM05D003141 ORTHO05D003633 4.5e-46 189.1 304 42.8
Actinidia27472 Actinidia chinensis HOM05D003141 ORTHO05D003633 2.2e-45 186.8 305 43.0
Gorai.007G028500 Gossypium raimondii HOM05D003141 ORTHO05D003633 2.9e-45 186.4 302 42.7
MD04G1062800 Malus domestica HOM05D003141 ORTHO05D003633 6.4e-45 185.3 296 43.6
Gohir.D11G026200 Gossypium hirsutum HOM05D003141 ORTHO05D003633 1.4e-44 184.1 302 43.0
AUR62007092 Chenopodium quinoa HOM05D003141 ORTHO05D003633 3.2e-44 183.0 304 43.4
Ah.12g053640 Amaranthus hybridus HOM05D003141 ORTHO05D003633 9.3e-44 181.4 302 43.7
Gohir.D12G218900 Gossypium hirsutum HOM05D003141 ORTHO05D003633 2.1e-43 180.3 306 40.2
TAR636G0976 Trochodendron aralioides HOM05D003141 ORTHO05D003633 2.7e-43 179.9 297 42.8
Hund14553 Selenicereus undatus HOM05D003141 ORTHO05D003633 6.0e-43 178.7 308 41.2
EL10Ac5g12387 Beta vulgaris HOM05D003141 ORTHO05D003633 7.9e-43 178.3 306 42.5
Gorai.004G197800 Gossypium raimondii HOM05D003141 ORTHO05D003633 7.9e-43 178.3 295 42.0
Lj8A264T56 Lonicera japonica HOM05D003141 ORTHO05D003633 1.8e-42 177.2 279 45.9
Nitab4.5_0001381g0110 Nicotiana tabacum HOM05D003141 ORTHO05D003633 1.8e-42 177.2 287 43.6
Prupe.5G068000 Prunus persica HOM05D003141 ORTHO05D003633 2.3e-42 176.8 308 42.2
Hund11601 Selenicereus undatus HOM05D003141 ORTHO05D003633 2.3e-42 176.8 303 43.2
Gorai.008G234500 Gossypium raimondii HOM05D003141 ORTHO05D003633 3.9e-42 176.0 305 39.3
GSVIVG01001959001 Vitis vinifera HOM05D003141 ORTHO05D003633 3.9e-42 176.0 209 52.2
Nitab4.5_0002289g0020 Nicotiana tabacum HOM05D003141 ORTHO05D003633 6.7e-42 175.3 289 42.6
Gohir.D08G187900 Gossypium hirsutum HOM05D003141 ORTHO05D003633 8.7e-42 174.9 293 41.0
Sc22g0000930 Simmondsia chinensis HOM05D003141 ORTHO05D003633 1.5e-41 174.1 292 41.1
Gohir.A12G216300 Gossypium hirsutum HOM05D003141 ORTHO05D003633 2.5e-41 173.3 304 39.8
Actinidia14419 Actinidia chinensis HOM05D003141 ORTHO05D003633 3.3e-41 172.9 273 43.2
CAN.G1058.41 Capsicum annuum HOM05D003141 ORTHO05D003633 7.4e-41 171.8 285 39.3
RcHm_v2.0_Chr7g0203541 Rosa chinensis HOM05D003141 ORTHO05D003633 9.6e-41 171.4 269 43.1
CSS0046148 Camellia sinensis var. sinensis HOM05D003141 ORTHO05D003633 6.2e-40 168.7 281 41.6
TAR375G1127 Trochodendron aralioides HOM05D003141 ORTHO05D003633 6.2e-40 168.7 289 41.5
MD06G1057100 Malus domestica HOM05D003141 ORTHO05D003633 1.1e-39 167.9 292 41.1
Actinidia10833 Actinidia chinensis HOM05D003141 ORTHO05D003633 1.4e-39 167.5 305 39.3
Nn6g33922 Nelumbo nucifera HOM05D003141 ORTHO05D003633 1.4e-39 167.5 282 38.3
vmacro10681 Vaccinium macrocarpon HOM05D003141 ORTHO05D003633 1.4e-39 167.5 245 42.4
Nn1g00964 Nelumbo nucifera HOM05D003141 ORTHO05D003633 2.4e-39 166.8 290 41.4
BcaNung00101 Brassica carinata HOM05D003141 ORTHO05D003633 9.0e-39 164.9 281 40.9
Duzib205G1689 Durio zibethinus HOM05D003141 ORTHO05D003633 9.0e-39 164.9 304 39.5
FAN04G0074 Fragaria x ananassa HOM05D003141 ORTHO05D003633 1.2e-38 164.5 273 41.8
vmacro22443 Vaccinium macrocarpon HOM05D003141 ORTHO05D003633 1.2e-38 164.5 262 39.7
Solyc08g078530.4 Solanum lycopersicum HOM05D003141 ORTHO05D003633 2.0e-38 163.7 286 38.8
Lj2C219G10 Lonicera japonica HOM05D003141 ORTHO05D003633 2.6e-38 163.3 299 39.8
TAR629G2174 Trochodendron aralioides HOM05D003141 ORTHO05D003633 7.6e-38 161.8 305 40.7
TAR629G2689 Trochodendron aralioides HOM05D003141 ORTHO05D003633 9.9e-38 161.4 305 40.3
Sopen08g027010 Solanum pennellii HOM05D003141 ORTHO05D003633 1.3e-37 161.0 286 38.8
Eucgr.D02089 Eucalyptus grandis HOM05D003141 ORTHO05D003633 2.9e-37 159.8 296 42.6
FAN08G3437 Fragaria x ananassa HOM05D003141 ORTHO05D003633 8.4e-37 158.3 269 41.3
Gohir.A12G216366 Gossypium hirsutum HOM05D003141 ORTHO05D003633 1.4e-36 157.5 289 38.4
Aa31LG6G80 Aethionema arabicum HOM05D003141 ORTHO05D003633 4.2e-36 156.0 266 37.2
vmacro00195 Vaccinium macrocarpon HOM05D003141 ORTHO05D003633 3.5e-35 152.9 291 40.2
vmacro14077 Vaccinium macrocarpon HOM05D003141 ORTHO05D003633 3.5e-35 152.9 262 38.2
PGR042G4011 Punica granatum HOM05D003141 ORTHO05D003633 4.6e-35 152.5 312 38.8
Oeu020432.4 Olea europaea HOM05D003141 ORTHO05D003633 6.0e-35 152.1 234 42.3
FvH4_5g19090 Fragaria vesca HOM05D003141 ORTHO05D003633 7.9e-35 151.8 267 41.2
PGSC0003DMG400004819 Solanum tuberosum HOM05D003141 ORTHO05D003633 7.9e-35 151.8 285 36.8
Lsat_1_v5_gn_6_90740 Lactuca sativa HOM05D003141 ORTHO05D003633 1.0e-34 151.4 276 37.3
Carub.0007s2408 Capsella rubella HOM05D003141 ORTHO05D003633 2.3e-34 150.2 278 40.3
BcaC07g38056 Brassica carinata HOM05D003141 ORTHO05D003633 3.0e-34 149.8 283 38.2
FAN18G0989 Fragaria x ananassa HOM05D003141 ORTHO05D003633 3.0e-34 149.8 267 40.8
BraA08t33284Z Brassica rapa HOM05D003141 ORTHO05D003633 3.9e-34 149.4 278 38.1
Sp7g16850 Schrenkiella parvula HOM05D003141 ORTHO05D003633 5.1e-34 149.1 273 40.3
FAN13G0222 Fragaria x ananassa HOM05D003141 ORTHO05D003633 6.7e-34 148.7 267 39.7
BraA08t33289Z Brassica rapa HOM05D003141 ORTHO05D003633 8.7e-34 148.3 277 37.9
HanXRQChr03g0087821 Helianthus annuus HOM05D003141 ORTHO05D003633 8.7e-34 148.3 273 42.1
CARHR223940 Cardamine hirsuta HOM05D003141 ORTHO05D003633 1.1e-33 147.9 269 37.5
MSTRG.12108 Avicennia marina HOM05D003141 ORTHO05D003633 1.5e-33 147.5 291 37.8
TAR374G0926 Trochodendron aralioides HOM05D003141 ORTHO05D003633 4.3e-33 146.0 297 40.4
A08p13070 Brassica napus HOM05D003141 ORTHO05D003633 9.6e-33 144.8 277 37.5
ECA240G2052 Erigeron canadensis HOM05D003141 ORTHO05D003633 9.6e-33 144.8 222 41.9
DCAR_008496 Daucus carota HOM05D003141 ORTHO05D003633 1.3e-32 144.4 296 37.2
Hma1.2p1_0316F.1_g123020 Hydrangea macrophylla HOM05D003141 ORTHO05D003633 2.8e-32 143.3 299 36.1
SHI20296 Sapria himalayana HOM05D003141 ORTHO05D003633 4.8e-32 142.5 299 36.8
BcaC07g38061 Brassica carinata HOM05D003141 ORTHO05D003633 8.2e-32 141.7 281 37.0
COL.COLO4_37160 Corchorus olitorius HOM05D003141 ORTHO05D003633 8.2e-32 141.7 147 54.4
Migut.A01111 Erythranthe guttata HOM05D003141 ORTHO05D003633 1.1e-31 141.4 294 37.8
HanXRQChr17g0549311 Helianthus annuus HOM05D003141 ORTHO05D003633 1.1e-31 141.4 272 39.7
SGA_v2.0_scaffold104G30161 Striga asiatica HOM05D003141 ORTHO05D003633 1.4e-31 141.0 284 38.7
Thhalv10024186m.g Eutrema salsugineum HOM05D003141 ORTHO05D003633 3.1e-31 139.8 269 36.1
SGA_v2.0_scaffold199G41175 Striga asiatica HOM05D003141 ORTHO05D003633 6.9e-31 138.7 283 39.2
DCAR_027770 Daucus carota HOM05D003141 ORTHO05D003633 9.0e-31 138.3 274 39.8
MBI04_g09516_MAGBIO Magnolia biondii HOM05D003141 ORTHO05D003633 9.0e-31 138.3 272 37.9
CDE04G1375 Ceratophyllum demersum HOM05D003141 ORTHO05D003633 4.5e-30 136.0 269 40.5
PSO017G2158 Papaver somniferum HOM05D003141 ORTHO05D003633 7.6e-30 135.2 303 36.6
DCAR_006836 Daucus carota HOM05D003141 ORTHO05D003633 1.3e-29 134.4 267 38.6
Peaxi162Scf00209g00005 Petunia axillaris HOM05D003141 ORTHO05D003633 1.7e-29 134.0 223 39.0
PSO170G6315 Papaver somniferum HOM05D003141 ORTHO05D003633 2.2e-29 133.7 305 36.4
MSTRG.25519 Avicennia marina HOM05D003141 ORTHO05D003633 1.9e-28 130.6 290 35.2
ATR0317G002 Amborella trichopoda HOM05D003141 ORTHO05D003633 5.5e-28 129.0 255 35.3
CDE02G1173 Ceratophyllum demersum HOM05D003141 ORTHO05D003633 7.1e-28 128.6 273 37.4
ECA240G3943 Erigeron canadensis HOM05D003141 ORTHO05D003633 7.1e-28 128.6 209 40.7
Aqoxy7G00802 Aquilegia oxysepala HOM05D003141 ORTHO05D003633 1.6e-27 127.5 280 35.0
SalBow6G4258 Salvia bowleyana HOM05D003141 ORTHO05D003633 1.6e-27 127.5 263 36.1
AL7G37390 Arabidopsis lyrata HOM05D003141 ORTHO05D003633 2.7e-27 126.7 270 36.7
Zm00001eb023270 Zea mays HOM05D003141 ORTHO05D003633 5.1e-26 122.5 233 36.9
Zm00001eb391270 Zea mays HOM05D003141 ORTHO05D003633 6.7e-26 122.1 264 35.6
HanXRQChr16g0510701 Helianthus annuus HOM05D003141 ORTHO05D003633 5.7e-25 119.0 200 40.0
PSO478G1324 Papaver somniferum HOM05D003141 ORTHO05D003633 1.1e-23 114.8 303 35.0
ECA233G3821 Erigeron canadensis HOM05D003141 ORTHO05D003633 1.8e-23 114.0 189 39.2
unitig_744.g24473 Utricularia gibba HOM05D003141 ORTHO05D003633 1.5e-22 110.9 272 34.2
BcaC06g33544 Brassica carinata HOM05D003141 ORTHO05D003633 2.6e-22 110.2 269 34.2
AT4G17330 Arabidopsis thaliana HOM05D003141 ORTHO05D003633 3.4e-22 109.8 270 33.0
PSO017G3860 Papaver somniferum HOM05D003141 ORTHO05D003633 6.5e-21 105.5 134 50.0
A08p13010 Brassica napus HOM05D003141 ORTHO05D003633 1.9e-20 104.0 213 37.6
A08p13110 Brassica napus HOM05D001269 ORTHO05D001083 3.9e-18 96.3 165 41.2
unitig_21.g20317 Utricularia gibba HOM05D003141 ORTHO05D003633 8.8e-18 95.1 137 48.2
SEGI_11834 Sequoiadendron giganteum HOM05D003141 ORTHO05D003633 1.9e-17 94.0 111 52.3
Mapoly0052s0086 Marchantia polymorpha HOM05D003141 ORTHO05D003633 9.4e-12 75.1 261 25.7
SEGI_09106 Sequoiadendron giganteum HOM05D003141 ORTHO05D003633 7.9e-11 72.0 204 29.9
SEGI_18879 Sequoiadendron giganteum HOM05D003141 ORTHO05D003633 7.9e-11 72.0 204 29.9
SMO141G0126 Selaginella moellendorffii HOM05D003141 ORTHO05D003633 1.4e-10 71.2 273 27.1
AagrBONN_evm.TU.Sc2ySwM_369.388 Anthoceros agrestis HOM05D003141 ORTHO05D003633 8.8e-10 68.6 262 26.7
Actinidia28422 Actinidia chinensis HOM05D003141 ORTHO05D003633 4.4e-09 66.2 184 33.2


User provided reference genes

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