Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40684 Trifolium pratense HOM05D003235 ORTHO05D003863 4.7e-54 214.2 99 100.0
CiPaw.05G089800 Carya illinoinensis HOM05D003235 ORTHO05D003863 1.4e-37 159.5 99 78.8
MSTRG.27622 Avicennia marina HOM05D003235 ORTHO05D003863 3.0e-37 158.3 98 79.6
TPR.G31486 Trifolium pratense HOM05D003235 ORTHO05D003863 3.0e-37 158.3 99 78.8
Actinidia32018 Actinidia chinensis HOM05D003235 ORTHO05D003863 5.2e-37 157.5 98 78.6
Cc09_g10610 Coffea canephora HOM05D003235 ORTHO05D003863 5.2e-37 157.5 98 78.6
Manes.04G065100 Manihot esculenta HOM05D003235 ORTHO05D003863 5.2e-37 157.5 98 78.6
Rhsim05G0048800 Rhododendron simsii HOM05D003235 ORTHO05D003863 5.2e-37 157.5 98 78.6
TWI79G1341 Tripterygium wilfordii HOM05D003235 ORTHO05D003863 5.2e-37 157.5 98 78.6
vmacro09726 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 5.2e-37 157.5 98 78.6
Cc08_g00700 Coffea canephora HOM05D003235 ORTHO05D003863 6.8e-37 157.1 98 77.6
Eucgr.I01507 Eucalyptus grandis HOM05D003235 ORTHO05D003863 6.8e-37 157.1 99 77.8
Glyma.09G119200 Glycine max HOM05D003235 ORTHO05D003863 6.8e-37 157.1 98 77.6
VMungo1215G3112 Vigna mungo HOM05D003235 ORTHO05D003863 6.8e-37 157.1 98 77.6
Dinv14158 Davidia involucrata HOM05D003235 ORTHO05D003863 1.2e-36 156.4 98 77.6
SalBow5G2197 Salvia bowleyana HOM05D003235 ORTHO05D003863 1.2e-36 156.4 98 78.6
SalBow5G2974 Salvia bowleyana HOM05D003235 ORTHO05D003863 1.2e-36 156.4 98 78.6
SGA_v2.0_scaffold98G29294 Striga asiatica HOM05D003235 ORTHO05D003863 1.2e-36 156.4 98 78.6
Ca_25919_v3 Cicer arietinum L. HOM05D003235 ORTHO05D003863 1.5e-36 156.0 98 77.6
arahy.Tifrunner.gnm1.ann1.5A4VTA Arachis hypogaea HOM05D003235 ORTHO05D003863 2.0e-36 155.6 98 77.6
arahy.Tifrunner.gnm1.ann1.MB0JZI Arachis hypogaea HOM05D003235 ORTHO05D003863 2.0e-36 155.6 98 77.6
Ca_02021_v3 Cicer arietinum L. HOM05D003235 ORTHO05D003863 2.0e-36 155.6 98 77.6
Medtr2g438210 Medicago truncatula HOM05D003235 ORTHO05D003863 2.0e-36 155.6 98 77.6
Peaxi162Scf00362g00250 Petunia axillaris HOM05D003235 ORTHO05D003863 2.0e-36 155.6 98 76.5
TWI31G0863 Tripterygium wilfordii HOM05D003235 ORTHO05D003863 2.0e-36 155.6 98 76.5
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 2.0e-36 155.6 99 75.8
CAN.G1235.15 Capsicum annuum HOM05D003235 ORTHO05D003863 2.6e-36 155.2 98 75.5
Nitab4.5_0000783g0290 Nicotiana tabacum HOM05D003235 ORTHO05D003863 2.6e-36 155.2 98 75.5
Nn1g03654 Nelumbo nucifera HOM05D003235 ORTHO05D003863 3.4e-36 154.8 98 76.5
Oeu051847.1 Olea europaea HOM05D003235 ORTHO05D003863 3.4e-36 154.8 98 77.6
Cpa.g.sc20.187 Carica papaya HOM05D003235 ORTHO05D003863 4.4e-36 154.5 98 77.6
Actinidia20561 Actinidia chinensis HOM05D003235 ORTHO05D003863 5.7e-36 154.1 98 76.5
Phvul.003G022900 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 5.7e-36 154.1 98 76.5
Hund00347 Selenicereus undatus HOM05D003235 ORTHO05D003863 5.7e-36 154.1 98 76.5
GSVIVG01023935001 Vitis vinifera HOM05D003235 ORTHO05D003863 5.7e-36 154.1 98 76.5
Medtr4g127910 Medicago truncatula HOM05D003235 ORTHO05D003863 7.5e-36 153.7 98 76.5
THA.LOC104819684 Tarenaya hassleriana HOM05D003235 ORTHO05D003863 7.5e-36 153.7 98 75.5
unitig_749.g13984 Utricularia gibba HOM05D003235 ORTHO05D003863 7.5e-36 153.7 98 76.5
Migut.N01350 Erythranthe guttata HOM05D003235 ORTHO05D003863 9.8e-36 153.3 98 77.6
Duzib248G1500 Durio zibethinus HOM05D003235 ORTHO05D003863 1.3e-35 152.9 98 76.5
Lj6g0023552 Lotus japonicus HOM05D003235 ORTHO05D003863 1.3e-35 152.9 98 76.5
Psat1g147840 Pisum sativum HOM05D003235 ORTHO05D003863 1.3e-35 152.9 98 76.5
PGR142G4436 Punica granatum HOM05D003235 ORTHO05D003863 1.3e-35 152.9 98 76.5
Solyc08g082340.3 Solanum lycopersicum HOM05D003235 ORTHO05D003863 1.3e-35 152.9 98 74.5
Sopen08g030600 Solanum pennellii HOM05D003235 ORTHO05D003863 1.3e-35 152.9 98 74.5
PGSC0003DMG400012284 Solanum tuberosum HOM05D003235 ORTHO05D003863 1.3e-35 152.9 98 74.5
Atru.chr5.3499 Acer truncatum HOM05D003235 ORTHO05D003863 1.7e-35 152.5 99 75.8
Aqoxy7G01395 Aquilegia oxysepala HOM05D003235 ORTHO05D003863 1.7e-35 152.5 98 76.5
CSS0024694 Camellia sinensis var. sinensis HOM05D003235 ORTHO05D003863 1.7e-35 152.5 98 76.5
Ciclev10028672m.g Citrus clementina HOM05D003235 ORTHO05D003863 1.7e-35 152.5 99 74.7
COL.COLO4_17945 Corchorus olitorius HOM05D003235 ORTHO05D003863 1.7e-35 152.5 98 75.5
Haze_02042 Corylus avellana HOM05D003235 ORTHO05D003863 1.7e-35 152.5 98 76.5
FvH4_2g16380 Fragaria vesca HOM05D003235 ORTHO05D003863 1.7e-35 152.5 98 73.5
FAN15G0986 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.7e-35 152.5 98 73.5
FAN24G0538 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.7e-35 152.5 98 73.5
FAN24G1371 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.7e-35 152.5 98 73.5
Lalb_Chr20g0114201 Lupinus albus HOM05D003235 ORTHO05D003863 1.7e-35 152.5 98 76.5
MD10G1138100 Malus domestica HOM05D003235 ORTHO05D003863 1.7e-35 152.5 98 73.5
Manes.11G106900 Manihot esculenta HOM05D003235 ORTHO05D003863 1.7e-35 152.5 98 76.5
Glyma.05G131100 Glycine max HOM05D003235 ORTHO05D003863 2.2e-35 152.1 98 74.5
Glyma.08G085800 Glycine max HOM05D003235 ORTHO05D003863 2.2e-35 152.1 98 74.5
Aqoxy4G02019 Aquilegia oxysepala HOM05D003235 ORTHO05D003863 2.8e-35 151.8 99 74.7
Gohir.A04G125200 Gossypium hirsutum HOM05D003235 ORTHO05D003863 2.8e-35 151.8 98 75.5
Gohir.D04G170000 Gossypium hirsutum HOM05D003235 ORTHO05D003863 2.8e-35 151.8 98 75.5
Gorai.012G158300 Gossypium raimondii HOM05D003235 ORTHO05D003863 2.8e-35 151.8 98 75.5
QL11p054430 Quercus lobata HOM05D003235 ORTHO05D003863 2.8e-35 151.8 98 74.5
QL11p054583 Quercus lobata HOM05D003235 ORTHO05D003863 2.8e-35 151.8 98 74.5
Rhsim11G0196500 Rhododendron simsii HOM05D003235 ORTHO05D003863 2.8e-35 151.8 98 76.5
CAN.G1804.1 Capsicum annuum HOM05D003235 ORTHO05D003863 3.7e-35 151.4 98 74.5
Gohir.A03G209200 Gossypium hirsutum HOM05D003235 ORTHO05D003863 3.7e-35 151.4 98 74.5
Gohir.D02G230900 Gossypium hirsutum HOM05D003235 ORTHO05D003863 3.7e-35 151.4 98 74.5
Gorai.005G258500 Gossypium raimondii HOM05D003235 ORTHO05D003863 3.7e-35 151.4 98 74.5
Thecc.02G046900 Theobroma cacao HOM05D003235 ORTHO05D003863 3.7e-35 151.4 98 74.5
ClCG02G003570 Citrullus lanatus HOM05D003235 ORTHO05D003863 4.9e-35 151.0 98 75.5
MELO3C013265.2 Cucumis melo HOM05D003235 ORTHO05D003863 4.9e-35 151.0 98 75.5
CsaV3_7G001740 Cucumis sativus L. HOM05D003235 ORTHO05D003863 4.9e-35 151.0 98 75.5
MBI02_g34309_MAGBIO Magnolia biondii HOM05D003235 ORTHO05D003863 4.9e-35 151.0 98 75.5
Prupe.8G176600 Prunus persica HOM05D003235 ORTHO05D003863 4.9e-35 151.0 98 72.4
VMungo0251G3552 Vigna mungo HOM05D003235 ORTHO05D003863 4.9e-35 151.0 98 75.5
CiPaw.06G117700 Carya illinoinensis HOM05D003235 ORTHO05D003863 6.3e-35 150.6 98 76.5
DCAR_015672 Daucus carota HOM05D003235 ORTHO05D003863 6.3e-35 150.6 98 76.5
RcHm_v2.0_Chr6g0280151 Rosa chinensis HOM05D003235 ORTHO05D003863 6.3e-35 150.6 98 73.5
Sed0003744 Sechium edule HOM05D003235 ORTHO05D003863 6.3e-35 150.6 98 74.5
Sed0009233 Sechium edule HOM05D003235 ORTHO05D003863 6.3e-35 150.6 98 74.5
FAN27G1339 Fragaria x ananassa HOM05D003235 ORTHO05D003863 8.3e-35 150.2 98 72.4
THA.LOC104807394 Tarenaya hassleriana HOM05D003235 ORTHO05D003863 8.3e-35 150.2 100 73.0
MD00G1083900 Malus domestica HOM05D003235 ORTHO05D003863 1.4e-34 149.4 98 72.4
Phvul.002G191600 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 1.4e-34 149.4 98 74.5
CDE11G0005 Ceratophyllum demersum HOM05D003235 ORTHO05D003863 1.8e-34 149.1 98 74.5
HPP92_017619 Vanilla planifolia HOM05D003235 ORTHO05D003863 1.8e-34 149.1 98 74.5
Ah.01g007750 Amaranthus hybridus HOM05D003235 ORTHO05D003863 2.4e-34 148.7 98 74.5
arahy.Tifrunner.gnm1.ann1.0G9KRE Arachis hypogaea HOM05D003235 ORTHO05D003863 2.4e-34 148.7 98 74.5
arahy.Tifrunner.gnm1.ann1.S5QGNM Arachis hypogaea HOM05D003235 ORTHO05D003863 2.4e-34 148.7 98 74.5
CANSAT11G0145 Cannabis sativa HOM05D003235 ORTHO05D003863 2.4e-34 148.7 97 74.2
HanXRQChr14g0458991 Helianthus annuus HOM05D003235 ORTHO05D003863 2.4e-34 148.7 98 75.5
Lalb_Chr15g0083901 Lupinus albus HOM05D003235 ORTHO05D003863 2.4e-34 148.7 98 75.5
Potri.009G143200 Populus trichocarpa HOM05D003235 ORTHO05D003863 2.4e-34 148.7 98 75.5
Sabra09G0111000 Salix brachista HOM05D003235 ORTHO05D003863 2.4e-34 148.7 98 75.5
Hund17321 Selenicereus undatus HOM05D003235 ORTHO05D003863 2.4e-34 148.7 98 73.5
HanXRQChr11g0335221 Helianthus annuus HOM05D003235 ORTHO05D003863 3.1e-34 148.3 99 74.7
SHI05839 Sapria himalayana HOM05D003235 ORTHO05D003863 3.1e-34 148.3 98 73.5
PSO541G0846 Papaver somniferum HOM05D003235 ORTHO05D003863 4.1e-34 147.9 98 74.5
PSO675G5274 Papaver somniferum HOM05D003235 ORTHO05D003863 4.1e-34 147.9 98 74.5
HPP92_011716 Vanilla planifolia HOM05D003235 ORTHO05D003863 4.1e-34 147.9 98 74.5
CDE05G0254 Ceratophyllum demersum HOM05D003235 ORTHO05D003863 5.4e-34 147.5 98 73.5
HanXRQChr08g0236381 Helianthus annuus HOM05D003235 ORTHO05D003863 5.4e-34 147.5 105 70.5
Lsat_1_v5_gn_8_120260 Lactuca sativa HOM05D003235 ORTHO05D003863 7.0e-34 147.1 98 74.5
FAN04G0585 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.2e-33 146.4 98 72.4
BcaB08g36361 Brassica carinata HOM05D003235 ORTHO05D003863 1.6e-33 146.0 98 72.4
BcaC04g19724 Brassica carinata HOM05D003235 ORTHO05D003863 1.6e-33 146.0 98 72.4
A10p17830 Brassica napus HOM05D003235 ORTHO05D003863 1.6e-33 146.0 98 72.4
C09p53360 Brassica napus HOM05D003235 ORTHO05D003863 1.6e-33 146.0 98 72.4
BolC9t58209H Brassica oleracea HOM05D003235 ORTHO05D003863 1.6e-33 146.0 98 72.4
ECA233G5747 Erigeron canadensis HOM05D003235 ORTHO05D003863 1.6e-33 146.0 98 73.5
BcaNung00615 Brassica carinata HOM05D003235 ORTHO05D003863 2.7e-33 145.2 99 71.7
BcaNung00616 Brassica carinata HOM05D003235 ORTHO05D003863 2.7e-33 145.2 99 71.7
A01p03310 Brassica napus HOM05D003235 ORTHO05D003863 2.7e-33 145.2 99 71.7
C01p03650 Brassica napus HOM05D003235 ORTHO05D003863 2.7e-33 145.2 99 71.7
BolC1t00356H Brassica oleracea HOM05D003235 ORTHO05D003863 2.7e-33 145.2 99 71.7
BraA01t00316Z Brassica rapa HOM05D003235 ORTHO05D003863 2.7e-33 145.2 99 71.7
ECA236G3279 Erigeron canadensis HOM05D003235 ORTHO05D003863 2.7e-33 145.2 98 73.5
FvH4_5g27680 Fragaria vesca HOM05D003235 ORTHO05D003863 2.7e-33 145.2 98 71.4
Potri.004G183300 Populus trichocarpa HOM05D003235 ORTHO05D003863 2.7e-33 145.2 98 74.5
COL.COLO4_24688 Corchorus olitorius HOM05D003235 ORTHO05D003863 3.5e-33 144.8 107 69.2
Sp7g33030 Schrenkiella parvula HOM05D003235 ORTHO05D003863 4.5e-33 144.4 99 70.7
TAR627G1023 Trochodendron aralioides HOM05D003235 ORTHO05D003863 5.9e-33 144.1 98 73.5
ATR1159G019 Amborella trichopoda HOM05D003235 ORTHO05D003863 1.0e-32 143.3 99 71.7
Thhalv10013846m.g Eutrema salsugineum HOM05D003235 ORTHO05D003863 1.0e-32 143.3 98 71.4
AL8G37210 Arabidopsis lyrata HOM05D003235 ORTHO05D003863 1.3e-32 142.9 98 71.4
Carub.0008s2130 Capsella rubella HOM05D003235 ORTHO05D003863 1.3e-32 142.9 98 71.4
PGR042G2488 Punica granatum HOM05D003235 ORTHO05D003863 1.3e-32 142.9 99 70.7
Sp6g22200 Schrenkiella parvula HOM05D003235 ORTHO05D003863 1.3e-32 142.9 98 71.4
FAN13G0036 Fragaria x ananassa HOM05D003235 ORTHO05D003863 2.3e-32 142.1 98 70.4
Mapoly0113s0056 Marchantia polymorpha HOM05D003235 ORTHO05D003863 2.3e-32 142.1 100 71.0
Mapoly0005s0123 Marchantia polymorpha HOM05D003235 ORTHO05D003863 2.9e-32 141.7 98 71.4
Aa31LG2G14790 Aethionema arabicum HOM05D003235 ORTHO05D003863 3.8e-32 141.4 98 70.4
vmacro20582 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 3.8e-32 141.4 122 61.5
AT5G60620 Arabidopsis thaliana HOM05D003235 ORTHO05D003863 5.0e-32 141.0 98 70.4
vmacro17286 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 5.0e-32 141.0 89 76.4
AUR62012940 Chenopodium quinoa HOM05D003235 ORTHO05D003863 6.6e-32 140.6 98 70.4
QL10p000641 Quercus lobata HOM05D003235 ORTHO05D003863 8.6e-32 140.2 99 72.7
Os07g0531600 Oryza sativa ssp. japonica HOM05D003235 ORTHO05D003863 2.5e-31 138.7 98 70.4
Eucgr.G01837 Eucalyptus grandis HOM05D003235 ORTHO05D003863 3.3e-31 138.3 99 67.7
Pp3c11_26030 Physcomitrium patens HOM05D003235 ORTHO05D003863 4.3e-31 137.9 98 69.4
CARHR274300 Cardamine hirsuta HOM05D003235 ORTHO05D003863 5.6e-31 137.5 98 69.4
SMO164G0177 Selaginella moellendorffii HOM05D003235 ORTHO05D003863 7.3e-31 137.1 98 68.4
RhsimUnG0171100 Rhododendron simsii HOM05D003235 ORTHO05D003863 9.5e-31 136.7 89 74.2
Zm00001eb396350 Zea mays HOM05D003235 ORTHO05D003863 1.6e-30 136.0 98 69.4
Lj9A405T66 Lonicera japonica HOM05D003235 ORTHO05D003863 1.8e-29 132.5 149 53.0
EL10Ac3g05833 Beta vulgaris HOM05D003235 ORTHO05D003863 4.0e-29 131.3 98 66.3
Eucgr.G01836 Eucalyptus grandis HOM05D003235 ORTHO05D003863 8.9e-29 130.2 99 64.6
Pp3c14_5980 Physcomitrium patens HOM05D003235 ORTHO05D003863 2.0e-28 129.0 98 65.3
EL10Ac3g05834 Beta vulgaris HOM05D003235 ORTHO05D003863 1.3e-27 126.3 98 64.3
Cre06.g273250 Chlamydomonas reinhardtii HOM05D003235 ORTHO05D003863 9.2e-26 120.2 98 60.2
Ah.01g023630 Amaranthus hybridus HOM05D003235 ORTHO05D003863 7.8e-25 117.1 98 62.2
MCO05G004 Micromonas commoda HOM05D003235 ORTHO05D003863 1.7e-24 115.9 98 60.2
MBI02_g46599_MAGBIO Magnolia biondii HOM05D003235 ORTHO05D003863 3.0e-24 115.2 78 73.1
Lsat_1_v5_gn_7_116021 Lactuca sativa HOM05D003235 ORTHO05D003863 3.3e-23 111.7 98 61.2
MBI18_g41996_MAGBIO Magnolia biondii HOM05D003235 ORTHO05D003863 3.3e-23 111.7 83 68.7
PGSC0003DMG400018636 Solanum tuberosum HOM05D003235 ORTHO05D003863 5.6e-23 110.9 76 68.4
SGA_v2.0_scaffold80G25821 Striga asiatica HOM05D003235 ORTHO05D003863 4.7e-22 107.8 53 90.6
vmacro20801 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 8.0e-22 107.1 56 85.7
Phvul.002G192000 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 1.1e-21 106.7 98 59.2
EL10Ac9g21270 Beta vulgaris HOM05D003235 ORTHO05D003863 1.4e-21 106.3 98 59.2
SEGI_35719 Sequoiadendron giganteum HOM05D003235 ORTHO05D003863 6.8e-21 104.0 53 88.7
FAN08G2058 Fragaria x ananassa HOM05D003235 ORTHO05D003863 8.9e-21 103.6 74 67.6
BraA10t43862Z Brassica rapa HOM05D003235 ORTHO05D003863 2.6e-20 102.1 75 66.7
SEGI_03808 Sequoiadendron giganteum HOM05D003235 ORTHO05D003863 3.4e-20 101.7 53 86.8
FAN18G1267 Fragaria x ananassa HOM05D003235 ORTHO05D003863 7.5e-20 100.5 76 64.5
PRCOL_00006733 Prasinoderma coloniale HOM05D003235 ORTHO05D003863 1.7e-19 99.4 99 55.6
AUR62027140 Chenopodium quinoa HOM05D003235 ORTHO05D003863 2.9e-19 98.6 53 83.0
Phvul.002G192600 Phaseolus vulgaris HOM05D003235 ORTHO05D017489 7.8e-17 90.5 80 58.8
RcHm_v2.0_Chr4g0414791 Rosa chinensis HOM05D003235 ORTHO05D003863 1.5e-15 86.3 83 55.4
Phvul.002G192901 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 6.2e-14 80.9 63 66.7
TPR.G8522 Trifolium pratense HOM05D003235 ORTHO05D003863 8.1e-14 80.5 59 69.5
vmacro02323 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 5.2e-13 77.8 45 80.0
Actinidia26336 Actinidia chinensis HOM05D003235 ORTHO05D003863 1.2e-12 76.6 56 67.9
AagrBONN_evm.TU.Sc2ySwM_344.5027 Anthoceros agrestis HOM05D003235 ORTHO05D003863 7.5e-12 73.9 98 44.9
CBR_g30645 Chara braunii HOM05D000019 ORTHO05D000048 7.1e-10 67.4 32 93.8
RhsimUnG0142800 Rhododendron simsii HOM05D003235 ORTHO05D003863 1.1e-07 60.1 35 77.1
SMO292G0009 Selaginella moellendorffii HOM05D024931 ORTHO05D003863 1.1e-07 60.1 94 41.5
Aqoxy2G01314 Aquilegia oxysepala HOM05D003235 ORTHO05D003863 3.3e-07 58.5 35 74.3
arahy.Tifrunner.gnm1.ann1.W5AITF Arachis hypogaea HOM05D003235 ORTHO05D003863 4.3e-07 58.2 46 58.7
EL10Ac3g05050 Beta vulgaris HOM05D003235 ORTHO05D003863 2.8e-06 55.5 69 47.8
Phvul.002G178901 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 3.6e-06 55.1 44 61.4


User provided reference genes

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